<str<strong>on</strong>g>Proceedings</str<strong>on</strong>g> <str<strong>on</strong>g>of</str<strong>on</strong>g> <str<strong>on</strong>g>the</str<strong>on</strong>g> <str<strong>on</strong>g>Third</str<strong>on</strong>g> <str<strong>on</strong>g>Internati<strong>on</strong>al</str<strong>on</strong>g> <str<strong>on</strong>g>C<strong>on</strong>ference</str<strong>on</strong>g> <strong>on</strong> <strong>Invasive</strong> SpartinaChapter 1: Spartina BiologySPECIATION,GENETIC AND GENOMIC EVOLUTION IN SPARTINAM.L. AINOUCHE 1 ,A.BAUMEL 2 ,R.BAYER 3 ,K.FUKUNAGA 4 ,T.CARIOU 1 AND M.T. MISSET 11 UMR CNRS 6553 Ecobio. University <str<strong>on</strong>g>of</str<strong>on</strong>g> Rennes 1. Campus de Beaulieu. 35 042 Rennes Cedex (France);Malika.Ainouche@univ-rennes1.fr2 Institut Méditerranéen d'Ecologie et de Paléoécologie, Université Aix-Marseille – Faculté des Sciences de St. Jérôme.Avenue Escadrille Normandie-Niemen Boite 461, F 13397 Marseille cedex 20 (France)3 University <str<strong>on</strong>g>of</str<strong>on</strong>g> Memphis, 201A Life Sciences Building, Memphis, TN 38152 (USA)4 Faculty <str<strong>on</strong>g>of</str<strong>on</strong>g> Life and Envir<strong>on</strong>mental Sciences, Prefectural University <str<strong>on</strong>g>of</str<strong>on</strong>g> Hiroshima, 562 Nanatsuka-Cho, Shobara,Hiroshima 727-0023 (Japan)The genus Spartina <str<strong>on</strong>g>of</str<strong>on</strong>g>fers several examples <str<strong>on</strong>g>of</str<strong>on</strong>g> reticulate evoluti<strong>on</strong> through interspecifichybridizati<strong>on</strong> and polyploidy. These processes appear to have critical impact <strong>on</strong> adaptati<strong>on</strong> andinvasive abilities. Here we examine how molecular analyses have helped our undertsanding <str<strong>on</strong>g>of</str<strong>on</strong>g> <str<strong>on</strong>g>the</str<strong>on</strong>g>evoluti<strong>on</strong>ary patterns <str<strong>on</strong>g>of</str<strong>on</strong>g> Spartina, with particular focus <strong>on</strong> Spartina anglica, which is a well-knownexample <str<strong>on</strong>g>of</str<strong>on</strong>g> recent and successful polyploid species <str<strong>on</strong>g>of</str<strong>on</strong>g> hybrid origin that has now col<strong>on</strong>ized severalc<strong>on</strong>tinents. Molecular phylogenies have provided new insights <strong>on</strong> relati<strong>on</strong>ships and genomicdivergence am<strong>on</strong>g species. S. anglica is characterised by morphological plasticity and largeecological amplitude, c<strong>on</strong>trasting with a weak inter-individual genetic variati<strong>on</strong> in both its native(western Europe) and introduced (e.g., Australia) ranges. However, <str<strong>on</strong>g>the</str<strong>on</strong>g> homeologous sub-genomes<str<strong>on</strong>g>of</str<strong>on</strong>g> S. anglica exhibit c<strong>on</strong>sistent epigenetic and expressi<strong>on</strong> plasticity, which would represent keyprocesses explaining <str<strong>on</strong>g>the</str<strong>on</strong>g> ecological success <str<strong>on</strong>g>of</str<strong>on</strong>g> this species.INTRODUCTIONHybridizati<strong>on</strong> and polyploidy are am<strong>on</strong>g <str<strong>on</strong>g>the</str<strong>on</strong>g> mostprominent evoluti<strong>on</strong>ary processes involved in diversificati<strong>on</strong>and speciati<strong>on</strong> in plants. This is particularly well illustratedin <str<strong>on</strong>g>the</str<strong>on</strong>g> genus Spartina where reticulate events and genomeduplicati<strong>on</strong> (allopolyploidy) have occurred recurrently(Ainouche et al. 2004a). Recent hybridizati<strong>on</strong> andpolyploidisati<strong>on</strong> events have resulted in <str<strong>on</strong>g>the</str<strong>on</strong>g> expansi<strong>on</strong> <str<strong>on</strong>g>of</str<strong>on</strong>g>particularly successful genotypes with notorious ecologicalimpacts, and represent excellent opportunities to explore <str<strong>on</strong>g>the</str<strong>on</strong>g>early evoluti<strong>on</strong>ary processes that accompany <str<strong>on</strong>g>the</str<strong>on</strong>g>establishment and expansi<strong>on</strong> <str<strong>on</strong>g>of</str<strong>on</strong>g> a new species.In this paper, we will examine how recent molecularanalyses have helped our understanding <str<strong>on</strong>g>of</str<strong>on</strong>g> <str<strong>on</strong>g>the</str<strong>on</strong>g> evoluti<strong>on</strong>arypatterns in Spartina, with particular focus <strong>on</strong> Spartinaanglica which is a well-known example <str<strong>on</strong>g>of</str<strong>on</strong>g> recent andsuccessful polyploid species <str<strong>on</strong>g>of</str<strong>on</strong>g> hybrid origin that has nowcol<strong>on</strong>ized several c<strong>on</strong>tinents.HYBRIDIZATION AND POLYPLOIDY AS MAJORPROCESSES IN THE EVOLUTION OF SPARTINAAll Spartina species are polyploids; although anextensive screening <str<strong>on</strong>g>of</str<strong>on</strong>g> <str<strong>on</strong>g>the</str<strong>on</strong>g> chromosome numbers at <str<strong>on</strong>g>the</str<strong>on</strong>g>populati<strong>on</strong> level still needs to be performed in variousspecies, no diploid species are known in <str<strong>on</strong>g>the</str<strong>on</strong>g> genus, where<str<strong>on</strong>g>the</str<strong>on</strong>g> main ploidy levels recorded in <str<strong>on</strong>g>the</str<strong>on</strong>g> existing literature aretetraploid (2n = 40), hexaploid (2n = 60, 62) or dodecaploid(2n = 10, 122, 14), with a basic chromosome number x = 10(Marchant 1963, 1968). Spartina is a member <str<strong>on</strong>g>of</str<strong>on</strong>g> <str<strong>on</strong>g>the</str<strong>on</strong>g> tribeChloridoideae <str<strong>on</strong>g>of</str<strong>on</strong>g> <str<strong>on</strong>g>the</str<strong>on</strong>g> Grass family and it is composed <str<strong>on</strong>g>of</str<strong>on</strong>g> 17perennial species that are usually salt tolerant and thuscol<strong>on</strong>ize coastal or inland salt marshes in both <str<strong>on</strong>g>the</str<strong>on</strong>g> Nor<str<strong>on</strong>g>the</str<strong>on</strong>g>rnand Sou<str<strong>on</strong>g>the</str<strong>on</strong>g>rn hemispheres. Most <str<strong>on</strong>g>of</str<strong>on</strong>g> <str<strong>on</strong>g>the</str<strong>on</strong>g> species originatefrom <str<strong>on</strong>g>the</str<strong>on</strong>g> New World (Mobberley 1956). Only four taxa arenative to <str<strong>on</strong>g>the</str<strong>on</strong>g> Old-world: S. maritima, S. x neyrautii, S. xtownsendii and S. anglica, <str<strong>on</strong>g>the</str<strong>on</strong>g> three latter being <str<strong>on</strong>g>of</str<strong>on</strong>g> recent(19 th century) hybrid origin.Using nuclear (ITS and Waxy) and chloroplast (trnTtrnL)DNA sequences, Baumel et al. (2002a) have shownthat <str<strong>on</strong>g>the</str<strong>on</strong>g> genus has evolved through two well-supportedlineages. The first lineage comprises <str<strong>on</strong>g>the</str<strong>on</strong>g> American tetraploidspecies S. patens, S. bakeri, S. cynusoroides, S. gracilis, and<str<strong>on</strong>g>the</str<strong>on</strong>g> endemic S. arundinacea from <str<strong>on</strong>g>the</str<strong>on</strong>g> South-Atlantic andIndian oceans, that appears closely related to <str<strong>on</strong>g>the</str<strong>on</strong>g>sou<str<strong>on</strong>g>the</str<strong>on</strong>g>astern American S. ciliata. The sec<strong>on</strong>d lineage iscomposed <str<strong>on</strong>g>of</str<strong>on</strong>g> <str<strong>on</strong>g>the</str<strong>on</strong>g> hexaploid species including <str<strong>on</strong>g>the</str<strong>on</strong>g> eastern-American S. alterniflora, that appears weakly divergent fromits sister species S. foliosa from California, <str<strong>on</strong>g>the</str<strong>on</strong>g> AtlanticEuro-African S. maritima that is more differentiated at both<str<strong>on</strong>g>the</str<strong>on</strong>g> molecular and morphological levels. The tetraploid S.argentinensis is basal to this hexaploid lineage (Baumel etal. 2002a).Recent and well-documented hybridizati<strong>on</strong> eventsinvolve S. alterniflora that has been introduced in Californiaand in western Europe, and it has, in both cases, hybridizedwith native species (Fig. 1). The patterns and outcomes <str<strong>on</strong>g>of</str<strong>on</strong>g><str<strong>on</strong>g>the</str<strong>on</strong>g>se hybridizati<strong>on</strong>s agree with <str<strong>on</strong>g>the</str<strong>on</strong>g> phylogeneticrelati<strong>on</strong>ships and <str<strong>on</strong>g>the</str<strong>on</strong>g> molecular divergence found betweenspecies: fertile introgressant hybrids involving <str<strong>on</strong>g>the</str<strong>on</strong>g> sisterparental species S. alterniflora and S. foliosa <strong>on</strong> <strong>on</strong>e hand,and sterile hybrids (S. x neyrautii and S. x townsendii)-15-
Chapter 1: Spartina Biology<str<strong>on</strong>g>Proceedings</str<strong>on</strong>g> <str<strong>on</strong>g>of</str<strong>on</strong>g> <str<strong>on</strong>g>the</str<strong>on</strong>g> <str<strong>on</strong>g>Third</str<strong>on</strong>g> <str<strong>on</strong>g>Internati<strong>on</strong>al</str<strong>on</strong>g> <str<strong>on</strong>g>C<strong>on</strong>ference</str<strong>on</strong>g> <strong>on</strong> <strong>Invasive</strong> Spartinafollowed by alloploid speciati<strong>on</strong> (S. anglica), involvingrelated, but more divergent parental species (S. alternifloraand S. maritima) <strong>on</strong> <str<strong>on</strong>g>the</str<strong>on</strong>g> o<str<strong>on</strong>g>the</str<strong>on</strong>g>r hand.In California, S. alterniflora was deliberately introducedin <str<strong>on</strong>g>the</str<strong>on</strong>g> mid-1970s in San Francisco Bay where it now cooccurswith <str<strong>on</strong>g>the</str<strong>on</strong>g> native S. foliosa (Daehler and Str<strong>on</strong>g 1997).D. Str<strong>on</strong>g and his co-workers have extensively studied <str<strong>on</strong>g>the</str<strong>on</strong>g>ecological and evoluti<strong>on</strong>ary c<strong>on</strong>sequences <str<strong>on</strong>g>of</str<strong>on</strong>g> thisintroducti<strong>on</strong> (Ayres and Str<strong>on</strong>g 2010). Hybridizati<strong>on</strong>between <str<strong>on</strong>g>the</str<strong>on</strong>g>se two outcrossing, wind-pollinated speciesoccurs during <str<strong>on</strong>g>the</str<strong>on</strong>g> overlap <str<strong>on</strong>g>of</str<strong>on</strong>g> <str<strong>on</strong>g>the</str<strong>on</strong>g>ir flowering periods and hasbeen shown to occur bi-directi<strong>on</strong>ally (Antilla et al. 2000).Recurrent backcrosses have resulted in hybrid swarms thatdisplay most frequently <str<strong>on</strong>g>the</str<strong>on</strong>g> chloroplast haplotype <str<strong>on</strong>g>of</str<strong>on</strong>g> S.foliosa and up to 90% <str<strong>on</strong>g>of</str<strong>on</strong>g> <str<strong>on</strong>g>the</str<strong>on</strong>g> nuclear markers specific to S.alterniflora (Ayres et al. 1999; Antilla et al. 2000). Thesehybrids are rapidly spreading, and <str<strong>on</strong>g>the</str<strong>on</strong>g>y are now c<strong>on</strong>sideredas a c<strong>on</strong>servati<strong>on</strong> threat to <str<strong>on</strong>g>the</str<strong>on</strong>g> native S. foliosa populati<strong>on</strong>s.Reticulate events recently recorded in California alsoinvolve S. densiflora that has been introduced from Chile:Baumel et al. (2002a) reported an unexpected phylogeneticinc<strong>on</strong>gruence between different molecular data sets for <str<strong>on</strong>g>the</str<strong>on</strong>g>phylogenetic placement <str<strong>on</strong>g>of</str<strong>on</strong>g> a S. densiflora sample fromHumboldt Bay (California), and have c<strong>on</strong>sequentlyinterpreted this inc<strong>on</strong>gruence as possibly resulting fromhybridizati<strong>on</strong> with S. foliosa or S. alterniflora. Although <str<strong>on</strong>g>the</str<strong>on</strong>g>history <str<strong>on</strong>g>of</str<strong>on</strong>g> S. densiflora in both its native and introducedrange needs fur<str<strong>on</strong>g>the</str<strong>on</strong>g>r molecular investigati<strong>on</strong>, <str<strong>on</strong>g>the</str<strong>on</strong>g> recentdiscovery <str<strong>on</strong>g>of</str<strong>on</strong>g> hybrids between S. densiflora and S. foliosa in<str<strong>on</strong>g>the</str<strong>on</strong>g> San Francisco Bay (Ayres and Lee 2010) c<strong>on</strong>firms thathybridizati<strong>on</strong> may take place even between distantly relatedSpartina species.In western Europe, S. alterniflora has been accidentallyintroduced by shipping ballast at <str<strong>on</strong>g>the</str<strong>on</strong>g> end <str<strong>on</strong>g>of</str<strong>on</strong>g> <str<strong>on</strong>g>the</str<strong>on</strong>g> 19 th century.In Southampt<strong>on</strong> Bay (England) hybridizati<strong>on</strong> with S.maritima resulted in a first generati<strong>on</strong> hybrid S. townsendii,that is still growing vegetatively near Hy<str<strong>on</strong>g>the</str<strong>on</strong>g>. Chromosomedoubling gave rise to a new fertile allopolyploid species, S.anglica that has rapidly expanded in range (Gray andRaybould 1997). Spartina anglica and S. x townsendii have35403S. foliosa1S. alternifloraS. maritimaBidirecti<strong>on</strong>al introgressi<strong>on</strong>Sterile F1 hybrids&Allopolyploid speciati<strong>on</strong>S. foliosaS. alternifloraS. maritimaFig. 1. Phylogenetic relati<strong>on</strong>ships <str<strong>on</strong>g>of</str<strong>on</strong>g> three Spartina species involved in recent hybridizati<strong>on</strong>s. Branch lengths are proporti<strong>on</strong>al to <str<strong>on</strong>g>the</str<strong>on</strong>g> number <str<strong>on</strong>g>of</str<strong>on</strong>g> nucleotidechanges (above <str<strong>on</strong>g>the</str<strong>on</strong>g> branches) recorded from <str<strong>on</strong>g>the</str<strong>on</strong>g> analysis <str<strong>on</strong>g>of</str<strong>on</strong>g> two nuclear (ITS and Waxy) and <strong>on</strong>e chloroplast (trnT-trnL spacer) DNA sequences(data from Baumel et al. 2002a). The map displays <str<strong>on</strong>g>the</str<strong>on</strong>g> natural range <str<strong>on</strong>g>of</str<strong>on</strong>g> <str<strong>on</strong>g>the</str<strong>on</strong>g>se species and <str<strong>on</strong>g>the</str<strong>on</strong>g> two arrows indicate <str<strong>on</strong>g>the</str<strong>on</strong>g> recent introducti<strong>on</strong>s <str<strong>on</strong>g>of</str<strong>on</strong>g> Spartinaalterniflora.-16-
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