Sequencher 4.8 User Manual--PC - Bioinformatics and Biological ...

Figure 21-11 Chromatogram preference settings
If you click the Print Scale Factor checkbox and you used the slider shown at the left in
Figure 21-12, the scale factor will appear on any printout of that chromatogram.
If you click the Rev & Comp Displayed as Lower Case checkbox, the original base
calls for a reversed and complemented sequence are shown in lower case (as opposed to
backwards) as the second of two lines of bases above the traces (as in Figure 21-12).
Figure 21-12 Reversed and complemented sequence
Under Width Peak to Peak, you can stretch your traces horizontally by selecting the
Wide button.
Contig Chromatogram
The Contig Chromatogram preferences control the display of chromatograms of
sequences from a contig. When you have aligned several sequences from a contig and
displayed the chromatograms, several traces appear in a single window, one above the
other across the width of the window.
SEQUENCHER 4.8 User Manual for Windows © 1991 - 2007 Gene Codes Corporation, Inc. All rights reserved.
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