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Sequencher 4.8 User Manual--PC - Bioinformatics and Biological ...

Sequencher 4.8 User Manual--PC - Bioinformatics and Biological ...

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Note: When using ftp to transfer your data to your local computer, it is ALWAYS<br />

important to transfer these files in binary mode. If you are not familiar with ftp, speak<br />

with your network administrator.<br />

Removing sequences <strong>and</strong> contigs from a project<br />

To remove items from the project, select the items you want to remove. Go to the Edit<br />

menu <strong>and</strong> choose Remove From Project…, or click the Trash Can button in the button<br />

bar. Removing an item from a project is permanent, so <strong>Sequencher</strong> asks whether you<br />

really want to do it.<br />

Note: Remember, you cannot back out of this action with a simple Undo comm<strong>and</strong>,<br />

but if you close the project without saving, all changes including removed items will be<br />

forgotten. The Revert to Saved Project comm<strong>and</strong> has the same effect.<br />

Closing an editor window<br />

When you have finished entering <strong>and</strong>/or editing a sequence, click the close button in the<br />

top right corner of the window at the right end of the title bar (see Figure 4-4) or choose<br />

Close Window from the File menu. <strong>Sequencher</strong> then removes the Sequence Editor<br />

window from the screen.<br />

Once you have closed the window, a sequencing icon will represent your sequence.<br />

(Figure 4-4).<br />

Figure 4-4 Clicking the close box<br />

Closing a project<br />

If you have finished working with the project but not with <strong>Sequencher</strong>, choose Close<br />

Project from the File menu. <strong>Sequencher</strong> will ask if you want to save the changes to your<br />

project. Click Yes to save your changes <strong>and</strong> close the project. Click No to close the<br />

project without saving your changes. Click Cancel if you wish to continue working with<br />

the project. You can then start working with another project by going to the File menu<br />

<strong>and</strong> choosing New Project or Open Project.<br />

SEQUENCHER <strong>4.8</strong> <strong>User</strong> <strong>Manual</strong> for Windows © 1991 - 2007 Gene Codes Corporation, Inc. All rights reserved.<br />

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