CinePlex v3 Manual - Plexon Inc

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2 • New settings made by the user while analyzing the video file(s) • Modifications made to settings from any of the sources above 2.11.3 Offline Functionality Most offline functionality is only marginally different from its online equivalent. The major exception is that the optional tracking and behavior functionality against a recorded file will be slightly different than that against live video. This is because the compression techniques used to create AVI files of manageable size inherently discard some of the data that was present in the original, i.e. they are “lossy” compression techniques. In particular, some color, details, and brightness information is compromised. Normally the differences are not visible to the naked eye, but they will cause slight differences in the sensitive algorithms used for tracking and behavior analysis. Sending tracking data to the MAP Sort Client is not enabled and does not occur in offline mode because there are no camera triggers and no neural data to synchronize with. In addition, Sort Client may not even be installed on the computer where the offline analysis is being done. Differences in the user interface are described below: • Global Config Pane - The frame rate shown is that of the source files selected. Other sections are unchanged. • Source Pane(s) - Most Camera adjustments are replaced with a file selection browsing tool. In their places are simple adjustments for brightness and contrast. Other sections are unchanged. • Messages Pane - No differences. • Tracking Panes (if tracking option is available) - No differences. • Areas Pane(s) (if tracking option is available) - No differences. 102 <strong>CinePlex</strong>
• Sequences Pane(s) (if behavior option is available) - No differences. • Events Pane(s) (if behavior option is available) - No differences. • Combination Event Pane(s) (if behavior option is available) - No differences. • Event Statistics Pane (if behavior option is available) - No differences. Version 3.0 103
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Neurotechnology Research Systems Us
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CinePlex Video, Capture, Tracking,
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Plexon Inc Publication History iii
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Plexon Inc Contents v Publication H
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Plexon Inc CinePlex vii File Toolba
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Plexon Inc CinePlex ix Appendix B P
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Plexon Inc Chapter 1 CinePlex Syste
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— All-digital imaging with one or
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stamped with corresponding MAP time
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Editor features, see “Offline ext
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1.3 CinePlex System Hardware and So
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The Quad MAP Controller (QMC) can c
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1.4 Data Analysis After recording,
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Plexon Inc Chapter 2 Using CinePlex
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2.2 Designing the Experiment The pr
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2.4 Performing an Operational Test
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4 Start Sort Client program and ver
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7 Start CinePlex Studio program. Th
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will not be able to distinguish the
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2.5.4.2.3 LEDs in Light with Reflec
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the object and the yellow rectangle
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2.5.4.3.7 Multicolored Animal. The
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Selecting the Tracking Mode 1 Selec
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3 Check the color to track (by clic
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that sizes, positions and velocitie
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d e Measure its longest dimension i
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In the above image note that the si
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d e Measure the feature’s horizon
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i If the current color in the box n
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n Go to the slider next to the Vert
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6 Repeat these steps for each addit
Page 63 and 64: Defining Logical Events Logical eve
Page 65 and 66: 1 Click the Add new combination of
Page 67 and 68: 2.6 Executing the Experiment Plan T
Page 69 and 70: also use a variety of commercial so
Page 71 and 72: When the Start button is clicked, S
Page 73 and 74: Note: If Studio is armed on one day
Page 75 and 76: settings and use the file mode to d
Page 77 and 78: 2 To set or change the folder locat
Page 79 and 80: 3 Open a second Windows Explorer an
Page 81 and 82: 2.7 Global Configuration Pane The G
Page 83 and 84: 2.8 Source Pane The Source Pane def
Page 85 and 86: The Arena Definition is also used t
Page 87 and 88: • In Reflective Colors mode, pixe
Page 89 and 90: Configuring CinePlex Studio to trac
Page 91 and 92: emove progressively larger features
Page 93 and 94: The illustration below is taken aft
Page 95 and 96: Configuring CinePlex Studio to trac
Page 97 and 98: 2 In the Video window a square area
Page 99 and 100: If Pure Colors is not selected, the
Page 101 and 102: Increase the threshold to reduce th
Page 103 and 104: 2.10 Operating CinePlex Studio with
Page 105 and 106: To verify CinePlex Studio data acqu
Page 107 and 108: 3 In the Control View, click Connec
Page 109 and 110: 2.10.1.1 Control View VTViewer disp
Page 111 and 112: 2.10.1.3 VTViewer Options The Optio
Page 113: 2.11 CinePlex Studio Offline Mode 2
Page 117 and 118: 2.13 CinePlex Studio Test Mode Test
Page 119 and 120: 2.14 Operation with the Quad MAP Co
Page 121 and 122: 6 Connect a push button switch (09-
Page 123 and 124: Version 3.0 111
Page 125 and 126: 15 On each CPX, launch and arm CPX.
Page 127 and 128: 2.15 Using the Extractor This chapt
Page 129 and 130: illustrates. Note that the Marker 4
Page 131 and 132: Plexon Inc Chapter 3 CinePlex Studi
Page 133 and 134: 3.2.1 Static Configuration Pane The
Page 135 and 136: 3.2.1.2.1 Camera Group. The Camera
Page 137 and 138: • Brightness - this setting speci
Page 139 and 140: 3.2.1.3 Tracking Tabs One of three
Page 141 and 142: 3.2.1.4.1 Object Contour Tracker Gr
Page 143 and 144: • Object Transparency - This sett
Page 145 and 146: • Cent. Grav. Size - This setting
Page 147 and 148: • Mrk1Threshold, Mrk2Threshold, M
Page 149 and 150: 3.2.2 Dynamic Configuration Pane Th
Page 151 and 152: • Subtract shapes - - this button
Page 153 and 154: • Add zone to selected sequence -
Page 155 and 156: • Delete selected tracking event
Page 157 and 158: 3.2.2.4.1 Toolbar. The toolbar cont
Page 159 and 160: Note: The effects of the Image Qual
Page 161 and 162: — Name - this value depends on wh
Page 163 and 164: 3.3 Menus The CinePlex Studio File
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3.3.3 DVR Menu 3.3.3.1 Arm Clicking
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3.4 Toolbars The File, DVR and Trac
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ow,time,x1,y1,x2,y2,x3,y3,x4,y4,x5,
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3.6.3 Source Settings The Source se
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Plexon Inc Chapter 4 Using CinePlex
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4.1.3 Changing and Saving Project F
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4.2.2 Setting Up a New Project This
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4.2.3 Understanding the CinePlex Ed
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4.2.4 Defining a New Marker This pr
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Markers window in the Name column a
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3 In the Format area, accept the de
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4.4 Customizing the User Interface
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In the Input window, select an inpu
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matically advances the video by a p
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4.5.3 Editing Markers and Marker Oc
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Selected Marker Occurrence, or clic
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3 Select entries in the Marker 1 an
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is defined and selected. A more sop
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corner of the image. If the video r
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Finding marker occurrences with a b
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2 Choose a marker from the Marker l
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Interpolating missing occurrences 1
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lowing illustration idx indicates t
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6 The user may set the columns for
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4.6 CinePlex Editor How-Tos This se
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However, do not expand the range so
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name and click Export! The Export C
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7 Repeat Step 6 until all the coord
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Plexon Inc Chapter 5 CinePlex Edito
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5.2 Main Window This section descri
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Show Complete Tail feature is usefu
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The color drawn at point p in the t
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— By pressing the PAGE UP or PAGE
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• Automatically Adjust Label Area
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Note: — Type - In the Type area,
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ox and select a different key. When
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Note: By default, if the Show check
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— Data Type: - This item contains
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5.2.8.1 Function The Messages windo
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• Add, Edit, and Delete Marker Oc
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• Reset Automatic Range Adjustmen
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5.3 Menus Menus provide access to C
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— Video Data Input File (AVI) - T
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After verifying that the correct fi
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• Which Markers - The default val
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• File - Type an export file name
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5.3.2 Edit Menu The following illus
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Note: The Edit Marker dialog box ma
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• Marker - This box shows the mar
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5.3.4.7 Step Forward This button ad
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5.3.6 Find Menu The following illus
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• Generate Selected - This button
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• Generate All - This button gene
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— Zone Interval • Operation to
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5.3.7.5 Snap-To Marker Occurrences
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— max - the largest time differen
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5.3.7.8.1 General Tab. • Initial
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5.3.7.8.3 Latency Correction Tab. F
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5.3.7.8.5 Audio Tab. • Available
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— Background - This is the backgr
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5.4 Toolbars CinePlex Editor includ
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5.5 How CinePlex Editor Creates Ini
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then load a neural data file that c
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Marker Type Abbr Information Stored
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From the Marker Occurrences window
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Note that applying this correction
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Snap-To Marker Occurrences tool des
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5.10 Analyzing CinePlex Studio data
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Plexon Inc Appendix A Installation
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Procedure for MAP/CPX Computer Hard
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A.2 Installation - Software This se
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3 The End User License Agreement wi
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7 The Select Program Manager Group
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11 The following window appears twi
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14 Click Next on the window below.
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18 The CinePlex installation has no
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3 The End User License Agreement wi
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7 The Select Program Manager Group
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11 Next, the Sentinel Key Drivers a
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15 Click Finish on the window below
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2 The Welcome window appears. Press
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6 The Select Components window appe
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10 Nothing else will be installed,
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3 After step 6 continue the procedu
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Note: to remote upgrades. If a remo
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Plexon Inc Appendix B Problem Resol
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toggle switch above these connector
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the CinePlex software will be requi
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1 Remove the TIM card and check tha
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1 Stop running all unnecessary appl
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B.3 CinePlex Studio Messages The ta
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Table 1: CinePlex Studio Simple Mes
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Table 2: CinePlex Studio Critical M
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Plexon Inc Appendix C Lens Selectio
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C.2 Lens Selection For CinePlex Ver
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C.3 Experiment Design C.3.1 Field o
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The formula to calculate the optimu
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3 Three Arm Phenolic Knob (small) -
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• A local professional camera or
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a Place the sandwich plate on the o
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7 The tripod adaptor should already
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Port 1 Port 2 Port 1 Port 2 Port 3
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3 Using the Plexon camera mounting
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Plexon Inc Appendix D Plexon User I
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D.2 Screen Elements D.2.1 Menus The
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D.2.2 Toolbars Each toolbar has a d
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• Close Button - The Close button
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— Hidden Windows - Docked windows
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D.3 Standard Menu Items and Dialogs
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D.3.2 Run Menu The purpose of the R
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— Licensing - Clicking the Licens
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D.3.4 Messages Window The Messages
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D.4 Customization Although the menu
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• Category - This is a list of al
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• Buttons - The toolbar buttons a
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Plexon Inc Appendix E Cabling Guide
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E.2 Typical MAP/CPX Cabling Diagram
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E.3 Typical MAP/CPX System Cabling
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E.3.2 MAP/CPX System with Two Video
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E.4 MAP/CPX Cable Images Version 3.
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E.5.2.2 With CHUB Version 3.0 E-11
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E.5.3.2 Two Video Cameras Version 3
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* CinePlex, Plexon, and the Plexon
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CinePlex v3 Manual - Plexon Inc

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