CinePlex v3 Manual - Plexon Inc

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5 5.2.1.2 Features Features of the Video window include: • Customizable Window - The user may customize the user interface. Cine- Plex Editor features a docking window architecture (see “Windows” on page 6) that enables the user to — float individual windows to any location — dock windows to various positions — close windows as needed — resize windows by clicking and dragging the splitter bars that divide them. • Resizable Video - By default, the Video window stretches or shrinks the native video resolution (typically 640 X 480) to match the size of the Video window. The user may also configure it to always show the video at its native resolution regardless of the size of the Video window by unchecking the Resize Video to Fit Window item on the right-click menu. • Coordinate Marker Crosshairs - If coordinate markers are present with their Show checkboxes selected, the coordinates in effect for the current video frame appear as crosshairs superimposed over the video image. The crosshairs appear in the display color set for the coordinate marker. The range for coordinates is always (0,0) to (1023,767) with (0,0) being in the lower-left corner, regardless of the video resolution. Before plotting the crosshairs, CinePlex Editor scales the marker coordinates to the video resolution. Also, the coordinates that appear in the Video window are always those that are relevant for the frame in the display—not necessarily the selected marker occurrences. That is, if different coordinate marker occurrences are selected in the Marker Occurrences window, in general it does not change the coordinate crosshairs shown in the Video window. Note that if coordinates have not been computed or supplied for a frame, the values for the prior frame are used. • Grid Lines - The user has the option of showing grid lines overlaid on the video and also determining the spacing and color of the grid lines. • Tails - While the video plays, it is possible to show the crosshairs with a tail line that shows the coordinate positions of previous frames. The length and width of this tail may be configured. By default, the tail changes color according to the age of the points. The tail color results from a blending of the marker color with another specified color; the blending amount increases for older points. If a Fade-to Color similar to the background color of the video is chosen, a fading effect is created that makes the tail appear to fade away. If the current time frame is rapidly advanced by using either the find functions or the Activity window scroll bar, CinePlex Editor can produce a confusing display for the rendered tails. In this case, from the right-click menu, select Clear Tails to erase the tail. Also, the user may draw a complete version of the tail by selecting Show Complete Tail from the right-click menu. The 212 CinePlex
Show Complete Tail feature is useful, for example, for determining the locations visited by the tracked animal. If the mouse pointer is moved outside of the Video window, the complete tail is erased. This menu item shows a line connecting the coordinates for all marker occurrences for the Coordinates marker, as shown in the following illustration: 5.2.1.3 Video Right-click Menu The right-click menu allows changing of the behavior of the window, which includes controlling the tail rendering and stretching the video. Click the right mouse button to open the right-click menu for the Video window: • Resize Video To Fit Window - When checked, this item resizes the video to fit the Video window. When unchecked, the video appears at its native resolution regardless of the size of the Video window. • Clear Tails - Clicking this item clears the tails from the video window if the Render Tails checkbox has been set on the Video View Properties dialog box. • Show Complete Tail - Clicking this item shows the complete tail from the whole video file if the Render Tails checkbox has been set on the Video View Properties dialog box. • Properties - Clicking this item opens the Video View Properties dialog box. The properties are discussed below. Version 3.0 213
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Neurotechnology Research Systems Us
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CinePlex Video, Capture, Tracking,
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Plexon Inc Publication History iii
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Plexon Inc Contents v Publication H
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Plexon Inc CinePlex vii File Toolba
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Plexon Inc CinePlex ix Appendix B P
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Plexon Inc Chapter 1 CinePlex Syste
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— All-digital imaging with one or
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stamped with corresponding MAP time
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Editor features, see “Offline ext
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1.3 CinePlex System Hardware and So
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The Quad MAP Controller (QMC) can c
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1.4 Data Analysis After recording,
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Plexon Inc Chapter 2 Using CinePlex
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2.2 Designing the Experiment The pr
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2.4 Performing an Operational Test
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4 Start Sort Client program and ver
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7 Start CinePlex Studio program. Th
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will not be able to distinguish the
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2.5.4.2.3 LEDs in Light with Reflec
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the object and the yellow rectangle
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2.5.4.3.7 Multicolored Animal. The
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Selecting the Tracking Mode 1 Selec
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3 Check the color to track (by clic
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that sizes, positions and velocitie
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d e Measure its longest dimension i
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In the above image note that the si
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d e Measure the feature’s horizon
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i If the current color in the box n
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n Go to the slider next to the Vert
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6 Repeat these steps for each addit
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Defining Logical Events Logical eve
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1 Click the Add new combination of
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2.6 Executing the Experiment Plan T
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also use a variety of commercial so
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When the Start button is clicked, S
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Note: If Studio is armed on one day
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settings and use the file mode to d
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2 To set or change the folder locat
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3 Open a second Windows Explorer an
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2.7 Global Configuration Pane The G
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2.8 Source Pane The Source Pane def
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The Arena Definition is also used t
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• In Reflective Colors mode, pixe
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Configuring CinePlex Studio to trac
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emove progressively larger features
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The illustration below is taken aft
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Configuring CinePlex Studio to trac
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2 In the Video window a square area
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If Pure Colors is not selected, the
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Increase the threshold to reduce th
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2.10 Operating CinePlex Studio with
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To verify CinePlex Studio data acqu
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3 In the Control View, click Connec
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2.10.1.1 Control View VTViewer disp
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2.10.1.3 VTViewer Options The Optio
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2.11 CinePlex Studio Offline Mode 2
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• Sequences Pane(s) (if behavior
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2.13 CinePlex Studio Test Mode Test
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2.14 Operation with the Quad MAP Co
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6 Connect a push button switch (09-
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Version 3.0 111
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15 On each CPX, launch and arm CPX.
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2.15 Using the Extractor This chapt
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illustrates. Note that the Marker 4
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Plexon Inc Chapter 3 CinePlex Studi
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3.2.1 Static Configuration Pane The
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3.2.1.2.1 Camera Group. The Camera
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• Brightness - this setting speci
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3.2.1.3 Tracking Tabs One of three
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3.2.1.4.1 Object Contour Tracker Gr
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• Object Transparency - This sett
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• Cent. Grav. Size - This setting
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• Mrk1Threshold, Mrk2Threshold, M
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3.2.2 Dynamic Configuration Pane Th
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• Subtract shapes - - this button
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• Add zone to selected sequence -
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• Delete selected tracking event
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3.2.2.4.1 Toolbar. The toolbar cont
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Note: The effects of the Image Qual
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— Name - this value depends on wh
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3.3 Menus The CinePlex Studio File
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3.3.3 DVR Menu 3.3.3.1 Arm Clicking
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3.4 Toolbars The File, DVR and Trac
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ow,time,x1,y1,x2,y2,x3,y3,x4,y4,x5,
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3.6.3 Source Settings The Source se
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Page 175 and 176: 4.1.3 Changing and Saving Project F
Page 177 and 178: 4.2.2 Setting Up a New Project This
Page 179 and 180: 4.2.3 Understanding the CinePlex Ed
Page 181 and 182: 4.2.4 Defining a New Marker This pr
Page 183 and 184: Markers window in the Name column a
Page 185 and 186: 3 In the Format area, accept the de
Page 187 and 188: 4.4 Customizing the User Interface
Page 189 and 190: In the Input window, select an inpu
Page 191 and 192: matically advances the video by a p
Page 193 and 194: 4.5.3 Editing Markers and Marker Oc
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Page 197 and 198: 3 Select entries in the Marker 1 an
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Page 205 and 206: 2 Choose a marker from the Marker l
Page 207 and 208: Interpolating missing occurrences 1
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Page 211 and 212: 6 The user may set the columns for
Page 213 and 214: 4.6 CinePlex Editor How-Tos This se
Page 215 and 216: However, do not expand the range so
Page 217 and 218: name and click Export! The Export C
Page 219 and 220: 7 Repeat Step 6 until all the coord
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Page 223: 5.2 Main Window This section descri
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Page 229 and 230: — By pressing the PAGE UP or PAGE
Page 231 and 232: • Automatically Adjust Label Area
Page 233 and 234: Note: — Type - In the Type area,
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Page 237 and 238: Note: By default, if the Show check
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Page 241 and 242: 5.2.8.1 Function The Messages windo
Page 243 and 244: • Add, Edit, and Delete Marker Oc
Page 245 and 246: • Reset Automatic Range Adjustmen
Page 247 and 248: 5.3 Menus Menus provide access to C
Page 249 and 250: — Video Data Input File (AVI) - T
Page 251 and 252: After verifying that the correct fi
Page 253 and 254: • Which Markers - The default val
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Page 257 and 258: 5.3.2 Edit Menu The following illus
Page 259 and 260: Note: The Edit Marker dialog box ma
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Page 263 and 264: 5.3.4.7 Step Forward This button ad
Page 265 and 266: 5.3.6 Find Menu The following illus
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Page 269 and 270: • Generate All - This button gene
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Page 273 and 274: 5.3.7.5 Snap-To Marker Occurrences
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— max - the largest time differen
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5.3.7.8.1 General Tab. • Initial
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5.3.7.8.3 Latency Correction Tab. F
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5.3.7.8.5 Audio Tab. • Available
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— Background - This is the backgr
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5.4 Toolbars CinePlex Editor includ
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5.5 How CinePlex Editor Creates Ini
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then load a neural data file that c
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Marker Type Abbr Information Stored
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From the Marker Occurrences window
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Note that applying this correction
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Snap-To Marker Occurrences tool des
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5.10 Analyzing CinePlex Studio data
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Plexon Inc Appendix A Installation
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Procedure for MAP/CPX Computer Hard
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A.2 Installation - Software This se
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3 The End User License Agreement wi
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7 The Select Program Manager Group
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11 The following window appears twi
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14 Click Next on the window below.
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18 The CinePlex installation has no
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3 The End User License Agreement wi
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7 The Select Program Manager Group
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11 Next, the Sentinel Key Drivers a
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15 Click Finish on the window below
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2 The Welcome window appears. Press
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6 The Select Components window appe
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10 Nothing else will be installed,
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3 After step 6 continue the procedu
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Note: to remote upgrades. If a remo
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Plexon Inc Appendix B Problem Resol
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toggle switch above these connector
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the CinePlex software will be requi
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1 Remove the TIM card and check tha
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1 Stop running all unnecessary appl
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B.3 CinePlex Studio Messages The ta
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Table 1: CinePlex Studio Simple Mes
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Table 2: CinePlex Studio Critical M
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Plexon Inc Appendix C Lens Selectio
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C.2 Lens Selection For CinePlex Ver
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C.3 Experiment Design C.3.1 Field o
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The formula to calculate the optimu
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3 Three Arm Phenolic Knob (small) -
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• A local professional camera or
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a Place the sandwich plate on the o
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7 The tripod adaptor should already
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Port 1 Port 2 Port 1 Port 2 Port 3
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3 Using the Plexon camera mounting
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Plexon Inc Appendix D Plexon User I
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D.2 Screen Elements D.2.1 Menus The
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D.2.2 Toolbars Each toolbar has a d
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• Close Button - The Close button
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— Hidden Windows - Docked windows
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D.3 Standard Menu Items and Dialogs
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D.3.2 Run Menu The purpose of the R
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— Licensing - Clicking the Licens
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D.3.4 Messages Window The Messages
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D.4 Customization Although the menu
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• Category - This is a list of al
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• Buttons - The toolbar buttons a
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Plexon Inc Appendix E Cabling Guide
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E.2 Typical MAP/CPX Cabling Diagram
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E.3 Typical MAP/CPX System Cabling
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E.3.2 MAP/CPX System with Two Video
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E.4 MAP/CPX Cable Images Version 3.
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E.5.2.2 With CHUB Version 3.0 E-11
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E.5.3.2 Two Video Cameras Version 3
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* CinePlex, Plexon, and the Plexon
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