CinePlex v3 Manual - Plexon Inc

More documents

Recommendations

Info

4 project, CinePlex Editor saves all the marker information in the CPJ file. The user may also export the marker data to: • a PLX file: The markers become Type 4 Events in the PLX file, along with the spike and continuous data from the original neural data file. • a NEX file: The markers become Nex variables, along with the spike times and continuous data from the original neural data file. • a text file: Each marker occurrence becomes a line in the text file. • a MATLAB file: Each marker occurrence becomes a row in a 2D matrix. • an Excel spreadsheet: Each marker occurrence becomes a row in the spreadsheet. Note: Matlab or Excel must be installed on the computer to export these file types. Otherwise, all Matlab or Excel functions, or both, appear dimmed. To save the project and export the data, follow the procedure below. 1 To save the quick-start example work, click Save. The Save As dialog box opens with the file name CM_Quickstart-01. Click Save to save CM_Quickstart-01. Note: If the user reloads the same CPJ file just saved, it puts CinePlex Editor back into the same state it was in prior to the save operation. CinePlex Editor reloads with the same markers, marker occurrences, current marker selection, etc. 2 For this quick-start example, export the data as a text file. From the File menu, select Export Markers. The Export Marker Data dialog box opens. 172 CinePlex
3 In the Format area, accept the default value Text file. The Export Marker Data dialog box includes various options for how, where, and what data to export. However, for this quick-start example, accept the defaults values and click Export! The Export Complete dialog box appears. 4 Locate CM_Quickstart.txt. Open the file with Windows Notepad or another text reader to see how the data is exported. 4.2.7 Re-opening a Project File This procedure covers the steps required to re-open a project file. 1 Exit and re-start CinePlex Editor. The Welcome To CinePlex dialog box opens. Note: The Welcome To CinePlex dialog box now contains an entry for the CM_Quickstart.cpj file in the recent projects list box. 2 Double-click CM_Quickstart.cpj to open the quick-start example project. CinePlex Editor opens in the same state that it was in when the project file was saved. 3 This completes the last procedure in the Quick-Start Example. Version 3.0 173
Page 1 and 2:
Neurotechnology Research Systems Us
Page 3 and 4:
CinePlex Video, Capture, Tracking,
Page 5 and 6:
Plexon Inc Publication History iii
Page 7 and 8:
Plexon Inc Contents v Publication H
Page 9 and 10:
Plexon Inc CinePlex vii File Toolba
Page 11 and 12:
Plexon Inc CinePlex ix Appendix B P
Page 13 and 14:
Plexon Inc Chapter 1 CinePlex Syste
Page 15 and 16:
— All-digital imaging with one or
Page 17 and 18:
stamped with corresponding MAP time
Page 19 and 20:
Editor features, see “Offline ext
Page 21 and 22:
1.3 CinePlex System Hardware and So
Page 23 and 24:
The Quad MAP Controller (QMC) can c
Page 25 and 26:
1.4 Data Analysis After recording,
Page 27 and 28:
Plexon Inc Chapter 2 Using CinePlex
Page 29 and 30:
2.2 Designing the Experiment The pr
Page 31 and 32:
2.4 Performing an Operational Test
Page 33 and 34:
4 Start Sort Client program and ver
Page 35 and 36:
7 Start CinePlex Studio program. Th
Page 37 and 38:
will not be able to distinguish the
Page 39 and 40:
2.5.4.2.3 LEDs in Light with Reflec
Page 41 and 42:
the object and the yellow rectangle
Page 43 and 44:
2.5.4.3.7 Multicolored Animal. The
Page 45 and 46:
Selecting the Tracking Mode 1 Selec
Page 47 and 48:
3 Check the color to track (by clic
Page 49 and 50:
that sizes, positions and velocitie
Page 51 and 52:
d e Measure its longest dimension i
Page 53 and 54:
In the above image note that the si
Page 55 and 56:
d e Measure the feature’s horizon
Page 57 and 58:
i If the current color in the box n
Page 59 and 60:
n Go to the slider next to the Vert
Page 61 and 62:
6 Repeat these steps for each addit
Page 63 and 64:
Defining Logical Events Logical eve
Page 65 and 66:
1 Click the Add new combination of
Page 67 and 68:
2.6 Executing the Experiment Plan T
Page 69 and 70:
also use a variety of commercial so
Page 71 and 72:
When the Start button is clicked, S
Page 73 and 74:
Note: If Studio is armed on one day
Page 75 and 76:
settings and use the file mode to d
Page 77 and 78:
2 To set or change the folder locat
Page 79 and 80:
3 Open a second Windows Explorer an
Page 81 and 82:
2.7 Global Configuration Pane The G
Page 83 and 84:
2.8 Source Pane The Source Pane def
Page 85 and 86:
The Arena Definition is also used t
Page 87 and 88:
• In Reflective Colors mode, pixe
Page 89 and 90:
Configuring CinePlex Studio to trac
Page 91 and 92:
emove progressively larger features
Page 93 and 94:
The illustration below is taken aft
Page 95 and 96:
Configuring CinePlex Studio to trac
Page 97 and 98:
2 In the Video window a square area
Page 99 and 100:
If Pure Colors is not selected, the
Page 101 and 102:
Increase the threshold to reduce th
Page 103 and 104:
2.10 Operating CinePlex Studio with
Page 105 and 106:
To verify CinePlex Studio data acqu
Page 107 and 108:
3 In the Control View, click Connec
Page 109 and 110:
2.10.1.1 Control View VTViewer disp
Page 111 and 112:
2.10.1.3 VTViewer Options The Optio
Page 113 and 114:
2.11 CinePlex Studio Offline Mode 2
Page 115 and 116:
• Sequences Pane(s) (if behavior
Page 117 and 118:
2.13 CinePlex Studio Test Mode Test
Page 119 and 120:
2.14 Operation with the Quad MAP Co
Page 121 and 122:
6 Connect a push button switch (09-
Page 123 and 124:
Version 3.0 111
Page 125 and 126:
15 On each CPX, launch and arm CPX.
Page 127 and 128:
2.15 Using the Extractor This chapt
Page 129 and 130:
illustrates. Note that the Marker 4
Page 131 and 132:
Plexon Inc Chapter 3 CinePlex Studi
Page 133 and 134: 3.2.1 Static Configuration Pane The
Page 135 and 136: 3.2.1.2.1 Camera Group. The Camera
Page 137 and 138: • Brightness - this setting speci
Page 139 and 140: 3.2.1.3 Tracking Tabs One of three
Page 141 and 142: 3.2.1.4.1 Object Contour Tracker Gr
Page 143 and 144: • Object Transparency - This sett
Page 145 and 146: • Cent. Grav. Size - This setting
Page 147 and 148: • Mrk1Threshold, Mrk2Threshold, M
Page 149 and 150: 3.2.2 Dynamic Configuration Pane Th
Page 151 and 152: • Subtract shapes - - this button
Page 153 and 154: • Add zone to selected sequence -
Page 155 and 156: • Delete selected tracking event
Page 157 and 158: 3.2.2.4.1 Toolbar. The toolbar cont
Page 159 and 160: Note: The effects of the Image Qual
Page 161 and 162: — Name - this value depends on wh
Page 163 and 164: 3.3 Menus The CinePlex Studio File
Page 165 and 166: 3.3.3 DVR Menu 3.3.3.1 Arm Clicking
Page 167 and 168: 3.4 Toolbars The File, DVR and Trac
Page 169 and 170: ow,time,x1,y1,x2,y2,x3,y3,x4,y4,x5,
Page 171 and 172: 3.6.3 Source Settings The Source se
Page 173 and 174: Plexon Inc Chapter 4 Using CinePlex
Page 175 and 176: 4.1.3 Changing and Saving Project F
Page 177 and 178: 4.2.2 Setting Up a New Project This
Page 179 and 180: 4.2.3 Understanding the CinePlex Ed
Page 181 and 182: 4.2.4 Defining a New Marker This pr
Page 183: Markers window in the Name column a
Page 187 and 188: 4.4 Customizing the User Interface
Page 189 and 190: In the Input window, select an inpu
Page 191 and 192: matically advances the video by a p
Page 193 and 194: 4.5.3 Editing Markers and Marker Oc
Page 195 and 196: Selected Marker Occurrence, or clic
Page 197 and 198: 3 Select entries in the Marker 1 an
Page 199 and 200: is defined and selected. A more sop
Page 201 and 202: corner of the image. If the video r
Page 203 and 204: Finding marker occurrences with a b
Page 205 and 206: 2 Choose a marker from the Marker l
Page 207 and 208: Interpolating missing occurrences 1
Page 209 and 210: lowing illustration idx indicates t
Page 211 and 212: 6 The user may set the columns for
Page 213 and 214: 4.6 CinePlex Editor How-Tos This se
Page 215 and 216: However, do not expand the range so
Page 217 and 218: name and click Export! The Export C
Page 219 and 220: 7 Repeat Step 6 until all the coord
Page 221 and 222: Plexon Inc Chapter 5 CinePlex Edito
Page 223 and 224: 5.2 Main Window This section descri
Page 225 and 226: Show Complete Tail feature is usefu
Page 227 and 228: The color drawn at point p in the t
Page 229 and 230: — By pressing the PAGE UP or PAGE
Page 231 and 232: • Automatically Adjust Label Area
Page 233 and 234: Note: — Type - In the Type area,
Page 235 and 236:
ox and select a different key. When
Page 237 and 238:
Note: By default, if the Show check
Page 239 and 240:
— Data Type: - This item contains
Page 241 and 242:
5.2.8.1 Function The Messages windo
Page 243 and 244:
• Add, Edit, and Delete Marker Oc
Page 245 and 246:
• Reset Automatic Range Adjustmen
Page 247 and 248:
5.3 Menus Menus provide access to C
Page 249 and 250:
— Video Data Input File (AVI) - T
Page 251 and 252:
After verifying that the correct fi
Page 253 and 254:
• Which Markers - The default val
Page 255 and 256:
• File - Type an export file name
Page 257 and 258:
5.3.2 Edit Menu The following illus
Page 259 and 260:
Note: The Edit Marker dialog box ma
Page 261 and 262:
• Marker - This box shows the mar
Page 263 and 264:
5.3.4.7 Step Forward This button ad
Page 265 and 266:
5.3.6 Find Menu The following illus
Page 267 and 268:
• Generate Selected - This button
Page 269 and 270:
• Generate All - This button gene
Page 271 and 272:
— Zone Interval • Operation to
Page 273 and 274:
5.3.7.5 Snap-To Marker Occurrences
Page 275 and 276:
— max - the largest time differen
Page 277 and 278:
5.3.7.8.1 General Tab. • Initial
Page 279 and 280:
5.3.7.8.3 Latency Correction Tab. F
Page 281 and 282:
5.3.7.8.5 Audio Tab. • Available
Page 283 and 284:
— Background - This is the backgr
Page 285 and 286:
5.4 Toolbars CinePlex Editor includ
Page 287 and 288:
5.5 How CinePlex Editor Creates Ini
Page 289 and 290:
then load a neural data file that c
Page 291 and 292:
Marker Type Abbr Information Stored
Page 293 and 294:
From the Marker Occurrences window
Page 295 and 296:
Note that applying this correction
Page 297 and 298:
Snap-To Marker Occurrences tool des
Page 299 and 300:
5.10 Analyzing CinePlex Studio data
Page 301 and 302:
Plexon Inc Appendix A Installation
Page 303 and 304:
Procedure for MAP/CPX Computer Hard
Page 305 and 306:
A.2 Installation - Software This se
Page 307 and 308:
3 The End User License Agreement wi
Page 309 and 310:
7 The Select Program Manager Group
Page 311 and 312:
11 The following window appears twi
Page 313 and 314:
14 Click Next on the window below.
Page 315 and 316:
18 The CinePlex installation has no
Page 317 and 318:
3 The End User License Agreement wi
Page 319 and 320:
7 The Select Program Manager Group
Page 321 and 322:
11 Next, the Sentinel Key Drivers a
Page 323 and 324:
15 Click Finish on the window below
Page 325 and 326:
2 The Welcome window appears. Press
Page 327 and 328:
6 The Select Components window appe
Page 329 and 330:
10 Nothing else will be installed,
Page 331 and 332:
3 After step 6 continue the procedu
Page 333 and 334:
Note: to remote upgrades. If a remo
Page 335 and 336:
Plexon Inc Appendix B Problem Resol
Page 337 and 338:
toggle switch above these connector
Page 339 and 340:
the CinePlex software will be requi
Page 341 and 342:
1 Remove the TIM card and check tha
Page 343 and 344:
1 Stop running all unnecessary appl
Page 345 and 346:
B.3 CinePlex Studio Messages The ta
Page 347 and 348:
Table 1: CinePlex Studio Simple Mes
Page 349 and 350:
Table 2: CinePlex Studio Critical M
Page 351 and 352:
Plexon Inc Appendix C Lens Selectio
Page 353 and 354:
C.2 Lens Selection For CinePlex Ver
Page 355 and 356:
C.3 Experiment Design C.3.1 Field o
Page 357 and 358:
The formula to calculate the optimu
Page 359 and 360:
3 Three Arm Phenolic Knob (small) -
Page 361 and 362:
• A local professional camera or
Page 363 and 364:
a Place the sandwich plate on the o
Page 365 and 366:
7 The tripod adaptor should already
Page 367 and 368:
Port 1 Port 2 Port 1 Port 2 Port 3
Page 369 and 370:
3 Using the Plexon camera mounting
Page 371 and 372:
Plexon Inc Appendix D Plexon User I
Page 373 and 374:
D.2 Screen Elements D.2.1 Menus The
Page 375 and 376:
D.2.2 Toolbars Each toolbar has a d
Page 377 and 378:
• Close Button - The Close button
Page 379 and 380:
— Hidden Windows - Docked windows
Page 381 and 382:
D.3 Standard Menu Items and Dialogs
Page 383 and 384:
D.3.2 Run Menu The purpose of the R
Page 385 and 386:
— Licensing - Clicking the Licens
Page 387 and 388:
D.3.4 Messages Window The Messages
Page 389 and 390:
D.4 Customization Although the menu
Page 391 and 392:
• Category - This is a list of al
Page 393 and 394:
• Buttons - The toolbar buttons a
Page 395 and 396:
Plexon Inc Appendix E Cabling Guide
Page 397 and 398:
E.2 Typical MAP/CPX Cabling Diagram
Page 399 and 400:
E.3 Typical MAP/CPX System Cabling
Page 401 and 402:
E.3.2 MAP/CPX System with Two Video
Page 403 and 404:
E.4 MAP/CPX Cable Images Version 3.
Page 405 and 406:
E.5.2.2 With CHUB Version 3.0 E-11
Page 407 and 408:
E.5.3.2 Two Video Cameras Version 3
Page 409 and 410:
* CinePlex, Plexon, and the Plexon
show all

CinePlex v3 Manual - Plexon Inc

You also want an ePaper? Increase the reach of your titles

Delete template?

Save as template?