CinePlex v3 Manual - Plexon Inc

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2 2.5.4.3.5 Background Subtraction. This illustration shows the background object and the animal together using background subtraction. Note that the system is tracking the animal. 2.5.4.3.6 Low Color Contrast. Background subtraction will allow the user to do body tracking even at a low color contrast between the animal and background. 30 <strong>CinePlex</strong>
2.5.4.3.7 Multicolored Animal. The user will be able to track multicolored animals using <strong>Plexon</strong>’s special algorithm of background subtraction. In this case be sure that all colors contrast with the background color. The user may use different background colors to try to improve the quality. For example, a brick red background works well for Long- Evans rats. 2.5.5 Tracking Mode Settings (if the tracking mode is available) Adding Arenas 1 Click the Add arena button. Version 3.0 31
Page 1 and 2: Neurotechnology Research Systems Us
Page 3 and 4: CinePlex Video, Capture, Tracking,
Page 5 and 6: Plexon Inc Publication History iii
Page 7 and 8: Plexon Inc Contents v Publication H
Page 9 and 10: Plexon Inc CinePlex vii File Toolba
Page 11 and 12: Plexon Inc CinePlex ix Appendix B P
Page 13 and 14: Plexon Inc Chapter 1 CinePlex Syste
Page 15 and 16: — All-digital imaging with one or
Page 17 and 18: stamped with corresponding MAP time
Page 19 and 20: Editor features, see “Offline ext
Page 21 and 22: 1.3 CinePlex System Hardware and So
Page 23 and 24: The Quad MAP Controller (QMC) can c
Page 25 and 26: 1.4 Data Analysis After recording,
Page 27 and 28: Plexon Inc Chapter 2 Using CinePlex
Page 29 and 30: 2.2 Designing the Experiment The pr
Page 31 and 32: 2.4 Performing an Operational Test
Page 33 and 34: 4 Start Sort Client program and ver
Page 35 and 36: 7 Start CinePlex Studio program. Th
Page 37 and 38: will not be able to distinguish the
Page 39 and 40: 2.5.4.2.3 LEDs in Light with Reflec
Page 41: the object and the yellow rectangle
Page 45 and 46: Selecting the Tracking Mode 1 Selec
Page 47 and 48: 3 Check the color to track (by clic
Page 49 and 50: that sizes, positions and velocitie
Page 51 and 52: d e Measure its longest dimension i
Page 53 and 54: In the above image note that the si
Page 55 and 56: d e Measure the feature’s horizon
Page 57 and 58: i If the current color in the box n
Page 59 and 60: n Go to the slider next to the Vert
Page 61 and 62: 6 Repeat these steps for each addit
Page 63 and 64: Defining Logical Events Logical eve
Page 65 and 66: 1 Click the Add new combination of
Page 67 and 68: 2.6 Executing the Experiment Plan T
Page 69 and 70: also use a variety of commercial so
Page 71 and 72: When the Start button is clicked, S
Page 73 and 74: Note: If Studio is armed on one day
Page 75 and 76: settings and use the file mode to d
Page 77 and 78: 2 To set or change the folder locat
Page 79 and 80: 3 Open a second Windows Explorer an
Page 81 and 82: 2.7 Global Configuration Pane The G
Page 83 and 84: 2.8 Source Pane The Source Pane def
Page 85 and 86: The Arena Definition is also used t
Page 87 and 88: • In Reflective Colors mode, pixe
Page 89 and 90: Configuring CinePlex Studio to trac
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The illustration below is taken aft
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Configuring CinePlex Studio to trac
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2 In the Video window a square area
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If Pure Colors is not selected, the
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Increase the threshold to reduce th
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2.10 Operating CinePlex Studio with
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To verify CinePlex Studio data acqu
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3 In the Control View, click Connec
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2.10.1.1 Control View VTViewer disp
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2.10.1.3 VTViewer Options The Optio
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2.11 CinePlex Studio Offline Mode 2
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• Sequences Pane(s) (if behavior
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2.13 CinePlex Studio Test Mode Test
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2.14 Operation with the Quad MAP Co
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6 Connect a push button switch (09-
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Version 3.0 111
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15 On each CPX, launch and arm CPX.
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2.15 Using the Extractor This chapt
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illustrates. Note that the Marker 4
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Plexon Inc Chapter 3 CinePlex Studi
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3.2.1 Static Configuration Pane The
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3.2.1.2.1 Camera Group. The Camera
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• Brightness - this setting speci
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3.2.1.3 Tracking Tabs One of three
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3.2.1.4.1 Object Contour Tracker Gr
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• Object Transparency - This sett
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• Cent. Grav. Size - This setting
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• Mrk1Threshold, Mrk2Threshold, M
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3.2.2 Dynamic Configuration Pane Th
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• Subtract shapes - - this button
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• Add zone to selected sequence -
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• Delete selected tracking event
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3.2.2.4.1 Toolbar. The toolbar cont
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Note: The effects of the Image Qual
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— Name - this value depends on wh
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3.3 Menus The CinePlex Studio File
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3.3.3 DVR Menu 3.3.3.1 Arm Clicking
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3.4 Toolbars The File, DVR and Trac
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ow,time,x1,y1,x2,y2,x3,y3,x4,y4,x5,
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3.6.3 Source Settings The Source se
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Plexon Inc Chapter 4 Using CinePlex
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4.1.3 Changing and Saving Project F
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4.2.2 Setting Up a New Project This
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4.2.3 Understanding the CinePlex Ed
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4.2.4 Defining a New Marker This pr
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Markers window in the Name column a
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3 In the Format area, accept the de
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4.4 Customizing the User Interface
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In the Input window, select an inpu
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matically advances the video by a p
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4.5.3 Editing Markers and Marker Oc
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Selected Marker Occurrence, or clic
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3 Select entries in the Marker 1 an
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is defined and selected. A more sop
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corner of the image. If the video r
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Finding marker occurrences with a b
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2 Choose a marker from the Marker l
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Interpolating missing occurrences 1
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lowing illustration idx indicates t
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6 The user may set the columns for
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4.6 CinePlex Editor How-Tos This se
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However, do not expand the range so
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name and click Export! The Export C
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7 Repeat Step 6 until all the coord
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Plexon Inc Chapter 5 CinePlex Edito
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5.2 Main Window This section descri
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Show Complete Tail feature is usefu
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The color drawn at point p in the t
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— By pressing the PAGE UP or PAGE
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• Automatically Adjust Label Area
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Note: — Type - In the Type area,
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ox and select a different key. When
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Note: By default, if the Show check
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— Data Type: - This item contains
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5.2.8.1 Function The Messages windo
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• Add, Edit, and Delete Marker Oc
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• Reset Automatic Range Adjustmen
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5.3 Menus Menus provide access to C
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— Video Data Input File (AVI) - T
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After verifying that the correct fi
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• Which Markers - The default val
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• File - Type an export file name
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5.3.2 Edit Menu The following illus
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Note: The Edit Marker dialog box ma
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• Marker - This box shows the mar
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5.3.4.7 Step Forward This button ad
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5.3.6 Find Menu The following illus
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• Generate Selected - This button
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• Generate All - This button gene
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— Zone Interval • Operation to
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5.3.7.5 Snap-To Marker Occurrences
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— max - the largest time differen
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5.3.7.8.1 General Tab. • Initial
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5.3.7.8.3 Latency Correction Tab. F
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5.3.7.8.5 Audio Tab. • Available
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— Background - This is the backgr
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5.4 Toolbars CinePlex Editor includ
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5.5 How CinePlex Editor Creates Ini
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then load a neural data file that c
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Marker Type Abbr Information Stored
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From the Marker Occurrences window
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Note that applying this correction
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Snap-To Marker Occurrences tool des
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5.10 Analyzing CinePlex Studio data
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Plexon Inc Appendix A Installation
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Procedure for MAP/CPX Computer Hard
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A.2 Installation - Software This se
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3 The End User License Agreement wi
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7 The Select Program Manager Group
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11 The following window appears twi
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14 Click Next on the window below.
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18 The CinePlex installation has no
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3 The End User License Agreement wi
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7 The Select Program Manager Group
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11 Next, the Sentinel Key Drivers a
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15 Click Finish on the window below
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2 The Welcome window appears. Press
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6 The Select Components window appe
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10 Nothing else will be installed,
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3 After step 6 continue the procedu
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Note: to remote upgrades. If a remo
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Plexon Inc Appendix B Problem Resol
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toggle switch above these connector
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the CinePlex software will be requi
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1 Remove the TIM card and check tha
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1 Stop running all unnecessary appl
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B.3 CinePlex Studio Messages The ta
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Table 1: CinePlex Studio Simple Mes
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Table 2: CinePlex Studio Critical M
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Plexon Inc Appendix C Lens Selectio
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C.2 Lens Selection For CinePlex Ver
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C.3 Experiment Design C.3.1 Field o
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The formula to calculate the optimu
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3 Three Arm Phenolic Knob (small) -
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• A local professional camera or
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a Place the sandwich plate on the o
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7 The tripod adaptor should already
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Port 1 Port 2 Port 1 Port 2 Port 3
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3 Using the Plexon camera mounting
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Plexon Inc Appendix D Plexon User I
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D.2 Screen Elements D.2.1 Menus The
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D.2.2 Toolbars Each toolbar has a d
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• Close Button - The Close button
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— Hidden Windows - Docked windows
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D.3 Standard Menu Items and Dialogs
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D.3.2 Run Menu The purpose of the R
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— Licensing - Clicking the Licens
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D.3.4 Messages Window The Messages
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D.4 Customization Although the menu
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• Category - This is a list of al
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• Buttons - The toolbar buttons a
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Plexon Inc Appendix E Cabling Guide
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E.2 Typical MAP/CPX Cabling Diagram
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E.3 Typical MAP/CPX System Cabling
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E.3.2 MAP/CPX System with Two Video
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E.4 MAP/CPX Cable Images Version 3.
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E.5.2.2 With CHUB Version 3.0 E-11
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E.5.3.2 Two Video Cameras Version 3
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* CinePlex, Plexon, and the Plexon
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CinePlex v3 Manual - Plexon Inc

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