CinePlex v3 Manual - Plexon Inc

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5 5.3.7 Tools Menu The following illustration shows the Tools menu. 5.3.7.1 Levels Editor This item opens the Levels Editor window. Use the Levels Editor dialog box to define level interval markers and generate marker occurrences for them. An illustration of the dialog box follows: • Scalar Marker To Use - This box contains the scalar marker to use for generating levels. • Generate All - This button generates marker occurrences for all the Level Interval markers that appear in the Level Intervals box. 254 <strong>CinePlex</strong>
• Generate Selected - This button generates marker occurrences for the selected level interval, which appears with a >> in the left-most column in the Level Intervals box. Note: Clicking either Generate All or Generate Selected deletes all existing marker occurrences for the affected Level Interval markers, and generates a new set of occurrences according to the current Scalar marker and conditions. The graph in the middle of the Levels Editor window shows the values of the selected Scalar marker as a function of time. The horizontal range of time that appears is always the entire file. The vertical scaling of the plot always adjusts to show the full range of the scalar data values. The levels appear as horizontal lines on the display, with the above or below setting for each level shown as either upward- or downward-pointing arrows on the lines. The number on the left indicates whether the line represents Level 1 or Level 2. Note: Positioning the mouse pointer inside this portion of the editor causes the scalar value corresponding to the pointer position to appear in the edit box at the bottom right of the display. • Level Intervals - This area contains a grid that has a line for each defined level interval. Select level intervals by clicking in the grid. Set the condition by editing the grid fields. When defining multiple Level Interval markers, only the one selected in the Level Intervals box displays. Click any level interval to select it. The selected level interval appears with a >> in the leftmost column of the grid. The columns shown in the grid are: — Level Interval Marker – This column contains the name of the Level Interval marker. The name can be changed by changing the text in this field. — Color – This column contains the color associated with the Level Interval marker. To change the color, click in this field to bring up a color selection dialog box. — The next five columns together define the condition for the Level Interval marker. The column arrangement forms a condition statement, for example “Above 175 AND Below 200.” – Abv/Blw – This column contains the above or below indicator for the first level. To change the condition, click in this field to open a drop-down list and select Above or Below. – Level 1 – This column contains the numerical value for the first level. Type a numerical value in this field or click and drag horizontal line 1 on the graph. – Oper – This column contains the logical operator between the two halves of the condition. The available selections in the drop-down list are AND, OR, or N/A. Selecting N/A means that there is only one level in the condition; <strong>CinePlex</strong> Editor ignores the last two columns and a second line on the graph does not appear. Version 3.0 255
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Neurotechnology Research Systems Us
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CinePlex Video, Capture, Tracking,
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Plexon Inc Publication History iii
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Plexon Inc Contents v Publication H
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Plexon Inc CinePlex vii File Toolba
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Plexon Inc CinePlex ix Appendix B P
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Plexon Inc Chapter 1 CinePlex Syste
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— All-digital imaging with one or
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stamped with corresponding MAP time
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Editor features, see “Offline ext
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1.3 CinePlex System Hardware and So
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The Quad MAP Controller (QMC) can c
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1.4 Data Analysis After recording,
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Plexon Inc Chapter 2 Using CinePlex
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2.2 Designing the Experiment The pr
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2.4 Performing an Operational Test
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4 Start Sort Client program and ver
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7 Start CinePlex Studio program. Th
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will not be able to distinguish the
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2.5.4.2.3 LEDs in Light with Reflec
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the object and the yellow rectangle
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2.5.4.3.7 Multicolored Animal. The
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Selecting the Tracking Mode 1 Selec
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3 Check the color to track (by clic
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that sizes, positions and velocitie
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d e Measure its longest dimension i
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In the above image note that the si
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d e Measure the feature’s horizon
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i If the current color in the box n
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n Go to the slider next to the Vert
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6 Repeat these steps for each addit
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Defining Logical Events Logical eve
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1 Click the Add new combination of
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2.6 Executing the Experiment Plan T
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also use a variety of commercial so
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When the Start button is clicked, S
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Note: If Studio is armed on one day
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settings and use the file mode to d
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2 To set or change the folder locat
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3 Open a second Windows Explorer an
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2.7 Global Configuration Pane The G
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2.8 Source Pane The Source Pane def
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The Arena Definition is also used t
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• In Reflective Colors mode, pixe
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Configuring CinePlex Studio to trac
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emove progressively larger features
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The illustration below is taken aft
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Configuring CinePlex Studio to trac
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2 In the Video window a square area
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If Pure Colors is not selected, the
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Increase the threshold to reduce th
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2.10 Operating CinePlex Studio with
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To verify CinePlex Studio data acqu
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3 In the Control View, click Connec
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2.10.1.1 Control View VTViewer disp
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2.10.1.3 VTViewer Options The Optio
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2.11 CinePlex Studio Offline Mode 2
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• Sequences Pane(s) (if behavior
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2.13 CinePlex Studio Test Mode Test
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2.14 Operation with the Quad MAP Co
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6 Connect a push button switch (09-
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Version 3.0 111
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15 On each CPX, launch and arm CPX.
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2.15 Using the Extractor This chapt
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illustrates. Note that the Marker 4
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Plexon Inc Chapter 3 CinePlex Studi
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3.2.1 Static Configuration Pane The
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3.2.1.2.1 Camera Group. The Camera
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• Brightness - this setting speci
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3.2.1.3 Tracking Tabs One of three
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3.2.1.4.1 Object Contour Tracker Gr
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• Object Transparency - This sett
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• Cent. Grav. Size - This setting
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• Mrk1Threshold, Mrk2Threshold, M
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3.2.2 Dynamic Configuration Pane Th
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• Subtract shapes - - this button
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• Add zone to selected sequence -
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• Delete selected tracking event
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3.2.2.4.1 Toolbar. The toolbar cont
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Note: The effects of the Image Qual
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— Name - this value depends on wh
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3.3 Menus The CinePlex Studio File
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3.3.3 DVR Menu 3.3.3.1 Arm Clicking
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3.4 Toolbars The File, DVR and Trac
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ow,time,x1,y1,x2,y2,x3,y3,x4,y4,x5,
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3.6.3 Source Settings The Source se
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Plexon Inc Chapter 4 Using CinePlex
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4.1.3 Changing and Saving Project F
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4.2.2 Setting Up a New Project This
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4.2.3 Understanding the CinePlex Ed
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4.2.4 Defining a New Marker This pr
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Markers window in the Name column a
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3 In the Format area, accept the de
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4.4 Customizing the User Interface
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In the Input window, select an inpu
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matically advances the video by a p
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4.5.3 Editing Markers and Marker Oc
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Selected Marker Occurrence, or clic
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3 Select entries in the Marker 1 an
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is defined and selected. A more sop
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corner of the image. If the video r
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Finding marker occurrences with a b
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2 Choose a marker from the Marker l
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Interpolating missing occurrences 1
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lowing illustration idx indicates t
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6 The user may set the columns for
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4.6 CinePlex Editor How-Tos This se
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Page 219 and 220: 7 Repeat Step 6 until all the coord
Page 221 and 222: Plexon Inc Chapter 5 CinePlex Edito
Page 223 and 224: 5.2 Main Window This section descri
Page 225 and 226: Show Complete Tail feature is usefu
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Page 229 and 230: — By pressing the PAGE UP or PAGE
Page 231 and 232: • Automatically Adjust Label Area
Page 233 and 234: Note: — Type - In the Type area,
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Page 237 and 238: Note: By default, if the Show check
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Page 241 and 242: 5.2.8.1 Function The Messages windo
Page 243 and 244: • Add, Edit, and Delete Marker Oc
Page 245 and 246: • Reset Automatic Range Adjustmen
Page 247 and 248: 5.3 Menus Menus provide access to C
Page 249 and 250: — Video Data Input File (AVI) - T
Page 251 and 252: After verifying that the correct fi
Page 253 and 254: • Which Markers - The default val
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Page 257 and 258: 5.3.2 Edit Menu The following illus
Page 259 and 260: Note: The Edit Marker dialog box ma
Page 261 and 262: • Marker - This box shows the mar
Page 263 and 264: 5.3.4.7 Step Forward This button ad
Page 265: 5.3.6 Find Menu The following illus
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Page 273 and 274: 5.3.7.5 Snap-To Marker Occurrences
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Page 277 and 278: 5.3.7.8.1 General Tab. • Initial
Page 279 and 280: 5.3.7.8.3 Latency Correction Tab. F
Page 281 and 282: 5.3.7.8.5 Audio Tab. • Available
Page 283 and 284: — Background - This is the backgr
Page 285 and 286: 5.4 Toolbars CinePlex Editor includ
Page 287 and 288: 5.5 How CinePlex Editor Creates Ini
Page 289 and 290: then load a neural data file that c
Page 291 and 292: Marker Type Abbr Information Stored
Page 293 and 294: From the Marker Occurrences window
Page 295 and 296: Note that applying this correction
Page 297 and 298: Snap-To Marker Occurrences tool des
Page 299 and 300: 5.10 Analyzing CinePlex Studio data
Page 301 and 302: Plexon Inc Appendix A Installation
Page 303 and 304: Procedure for MAP/CPX Computer Hard
Page 305 and 306: A.2 Installation - Software This se
Page 307 and 308: 3 The End User License Agreement wi
Page 309 and 310: 7 The Select Program Manager Group
Page 311 and 312: 11 The following window appears twi
Page 313 and 314: 14 Click Next on the window below.
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3 The End User License Agreement wi
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7 The Select Program Manager Group
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11 Next, the Sentinel Key Drivers a
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15 Click Finish on the window below
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2 The Welcome window appears. Press
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6 The Select Components window appe
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10 Nothing else will be installed,
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3 After step 6 continue the procedu
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Note: to remote upgrades. If a remo
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Plexon Inc Appendix B Problem Resol
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toggle switch above these connector
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the CinePlex software will be requi
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1 Remove the TIM card and check tha
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1 Stop running all unnecessary appl
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B.3 CinePlex Studio Messages The ta
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Table 1: CinePlex Studio Simple Mes
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Table 2: CinePlex Studio Critical M
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Plexon Inc Appendix C Lens Selectio
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C.2 Lens Selection For CinePlex Ver
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C.3 Experiment Design C.3.1 Field o
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The formula to calculate the optimu
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3 Three Arm Phenolic Knob (small) -
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• A local professional camera or
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a Place the sandwich plate on the o
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7 The tripod adaptor should already
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Port 1 Port 2 Port 1 Port 2 Port 3
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3 Using the Plexon camera mounting
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Plexon Inc Appendix D Plexon User I
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D.2 Screen Elements D.2.1 Menus The
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D.2.2 Toolbars Each toolbar has a d
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• Close Button - The Close button
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— Hidden Windows - Docked windows
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D.3 Standard Menu Items and Dialogs
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D.3.2 Run Menu The purpose of the R
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— Licensing - Clicking the Licens
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D.3.4 Messages Window The Messages
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D.4 Customization Although the menu
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• Category - This is a list of al
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• Buttons - The toolbar buttons a
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Plexon Inc Appendix E Cabling Guide
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E.2 Typical MAP/CPX Cabling Diagram
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E.3 Typical MAP/CPX System Cabling
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E.3.2 MAP/CPX System with Two Video
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E.4 MAP/CPX Cable Images Version 3.
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E.5.2.2 With CHUB Version 3.0 E-11
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E.5.3.2 Two Video Cameras Version 3
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* CinePlex, Plexon, and the Plexon
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