CinePlex v3 Manual - Plexon Inc

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4 makes the earlier time the start time for the Interval marker occurrence. • If playing – Click once to mark the start of the interval. The start time appears at the current time and the interval expands. Click a second time to mark the end of the interval. The end also appears at the current time. The user may keep the pointer over the Activity window while watching the video, then click to mark the start time and click again to mark the end time of each occurrence. • For Scalar (S) markers – Click in the Scalar window only, as follows, otherwise CinePlex Editor ignores the click. • If paused – Click-To-Add mode activates; see “Understanding Click-To-Add Mode” on page 178. Click to insert a Scalar marker occurrence with a value (see Note that follows) that corresponds to the location clicked in the Scalar window, at the time of the current video frame. With this feature, the user may enter a new Scalar occurrence on every nth frame and then use the Interpolate Missing Occurrences feature to fill in the skipped values; see “Interpolate Missing Occurrences” on page 262. Note: The user must have the Scalar window configured correctly for the desired range of the Scalar value; see “Scalar Right-click Menu” on page 232. • If playing – Click to insert an occurrence at the current time with a value that corresponds to the location clicked in the Scalar window. The animation does not pause. • For Coordinate (C) markers – Click in the Video window only, as follows, otherwise CinePlex Editor ignores the click. • If paused – Click-To-Add mode activates; see “Understanding Click-To-Add Mode” on page 178. Click in the Video window to enter a Coordinate marker occurrence with a value that corresponds to the location clicked in the Video window, at the time of the current video frame. With this feature, the user may enter a new Coordinate occurrence on every nth frame and then use the interpolate missing occurrences feature to fill in the skipped values; see “Interpolate Missing Occurrences” on page 262. Note: • If playing – Click to insert an occurrence at the current time with a value that corresponds to the location clicked in the Video window. The animation does not pause. The left-click method works for Level Interval and Zone Interval markers. However, in general the user should automatically generate these marker types by using the Levels Editor and Zones Editor dialog boxes. See “Using the Levels Editor” on page 185 and “Using the Zones Editor” on page 188. 180 CinePlex
4.5.3 Editing Markers and Marker Occurrences This section includes a series of short procedures dealing with markers and marker occurrences. Each procedure uses the most-efficient primary method, but additional methods that can be used to accomplish the same task appear in parentheses after the primary one. Follow the procedure below to delete a selected marker. 1 In the Markers window, select the marker to delete. 2 From the Markers window right-click menu, choose Delete Selected Marker (or from the Edit menu, choose Delete Selected Marker, or click the Delete Selected Marker button): CinePlex Editor immediately deletes the selected marker and its marker occurrences. Note: CinePlex Editor provides no confirmation before it deletes the marker. However, to undo the deletion, from the Edit menu, click Undo. Deleting all occurrences of a selected marker 1 In the Markers window, select the marker with the marker occurrences to delete. 2 From the Markers window right-click menu, choose Delete all Occurrences of Selected Marker (or from the Edit menu, choose Delete all Occurrences of Selected Marker, or click the Delete all Occurrences of Selected Marker button): CinePlex Editor immediately deletes all marker occurrences for the selected marker. Note: CinePlex Editor does not delete the marker itself, but it removes all occurrences of the marker. CinePlex Editor provides no confirmation before it deletes the marker occurrences. However, to undo the deletion, from the Edit menu, click Undo. Copying a selected marker 1 In the Markers window, select the marker to copy. 2 From the Markers window right-click menu, choose Make Copy of Selected Marker (or from the Edit menu, choose Make Copy of Selected Marker). An exact copy of the selected marker named Copy of appears in the Markers window. Note: The new marker has the same marker occurrences. However, the new marker gets new values for the associated key and for the Event ID(s), since those values need to be unique among the markers. Adding new marker occurrences 1 In the Marker Occurrences window, select the marker for the new occurrence. 2 From the Marker Occurrences window right-click menu, choose Add New Marker Occurrence (or from the Edit menu, choose Add New Marker Version 3.0 181
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Neurotechnology Research Systems Us
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CinePlex Video, Capture, Tracking,
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Plexon Inc Publication History iii
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Plexon Inc Contents v Publication H
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Plexon Inc CinePlex vii File Toolba
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Plexon Inc CinePlex ix Appendix B P
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Plexon Inc Chapter 1 CinePlex Syste
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— All-digital imaging with one or
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stamped with corresponding MAP time
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Editor features, see “Offline ext
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1.3 CinePlex System Hardware and So
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The Quad MAP Controller (QMC) can c
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1.4 Data Analysis After recording,
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Plexon Inc Chapter 2 Using CinePlex
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2.2 Designing the Experiment The pr
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2.4 Performing an Operational Test
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4 Start Sort Client program and ver
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7 Start CinePlex Studio program. Th
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will not be able to distinguish the
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2.5.4.2.3 LEDs in Light with Reflec
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the object and the yellow rectangle
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2.5.4.3.7 Multicolored Animal. The
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Selecting the Tracking Mode 1 Selec
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3 Check the color to track (by clic
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that sizes, positions and velocitie
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d e Measure its longest dimension i
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In the above image note that the si
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d e Measure the feature’s horizon
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i If the current color in the box n
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n Go to the slider next to the Vert
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6 Repeat these steps for each addit
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Defining Logical Events Logical eve
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1 Click the Add new combination of
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2.6 Executing the Experiment Plan T
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also use a variety of commercial so
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When the Start button is clicked, S
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Note: If Studio is armed on one day
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settings and use the file mode to d
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2 To set or change the folder locat
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3 Open a second Windows Explorer an
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2.7 Global Configuration Pane The G
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2.8 Source Pane The Source Pane def
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The Arena Definition is also used t
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• In Reflective Colors mode, pixe
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Configuring CinePlex Studio to trac
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emove progressively larger features
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The illustration below is taken aft
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Configuring CinePlex Studio to trac
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2 In the Video window a square area
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If Pure Colors is not selected, the
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Increase the threshold to reduce th
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2.10 Operating CinePlex Studio with
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To verify CinePlex Studio data acqu
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3 In the Control View, click Connec
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2.10.1.1 Control View VTViewer disp
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2.10.1.3 VTViewer Options The Optio
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2.11 CinePlex Studio Offline Mode 2
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• Sequences Pane(s) (if behavior
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2.13 CinePlex Studio Test Mode Test
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2.14 Operation with the Quad MAP Co
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6 Connect a push button switch (09-
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Version 3.0 111
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15 On each CPX, launch and arm CPX.
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2.15 Using the Extractor This chapt
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illustrates. Note that the Marker 4
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Plexon Inc Chapter 3 CinePlex Studi
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3.2.1 Static Configuration Pane The
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3.2.1.2.1 Camera Group. The Camera
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• Brightness - this setting speci
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3.2.1.3 Tracking Tabs One of three
Page 141 and 142: 3.2.1.4.1 Object Contour Tracker Gr
Page 143 and 144: • Object Transparency - This sett
Page 145 and 146: • Cent. Grav. Size - This setting
Page 147 and 148: • Mrk1Threshold, Mrk2Threshold, M
Page 149 and 150: 3.2.2 Dynamic Configuration Pane Th
Page 151 and 152: • Subtract shapes - - this button
Page 153 and 154: • Add zone to selected sequence -
Page 155 and 156: • Delete selected tracking event
Page 157 and 158: 3.2.2.4.1 Toolbar. The toolbar cont
Page 159 and 160: Note: The effects of the Image Qual
Page 161 and 162: — Name - this value depends on wh
Page 163 and 164: 3.3 Menus The CinePlex Studio File
Page 165 and 166: 3.3.3 DVR Menu 3.3.3.1 Arm Clicking
Page 167 and 168: 3.4 Toolbars The File, DVR and Trac
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Page 171 and 172: 3.6.3 Source Settings The Source se
Page 173 and 174: Plexon Inc Chapter 4 Using CinePlex
Page 175 and 176: 4.1.3 Changing and Saving Project F
Page 177 and 178: 4.2.2 Setting Up a New Project This
Page 179 and 180: 4.2.3 Understanding the CinePlex Ed
Page 181 and 182: 4.2.4 Defining a New Marker This pr
Page 183 and 184: Markers window in the Name column a
Page 185 and 186: 3 In the Format area, accept the de
Page 187 and 188: 4.4 Customizing the User Interface
Page 189 and 190: In the Input window, select an inpu
Page 191: matically advances the video by a p
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Page 197 and 198: 3 Select entries in the Marker 1 an
Page 199 and 200: is defined and selected. A more sop
Page 201 and 202: corner of the image. If the video r
Page 203 and 204: Finding marker occurrences with a b
Page 205 and 206: 2 Choose a marker from the Marker l
Page 207 and 208: Interpolating missing occurrences 1
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Page 211 and 212: 6 The user may set the columns for
Page 213 and 214: 4.6 CinePlex Editor How-Tos This se
Page 215 and 216: However, do not expand the range so
Page 217 and 218: name and click Export! The Export C
Page 219 and 220: 7 Repeat Step 6 until all the coord
Page 221 and 222: Plexon Inc Chapter 5 CinePlex Edito
Page 223 and 224: 5.2 Main Window This section descri
Page 225 and 226: Show Complete Tail feature is usefu
Page 227 and 228: The color drawn at point p in the t
Page 229 and 230: — By pressing the PAGE UP or PAGE
Page 231 and 232: • Automatically Adjust Label Area
Page 233 and 234: Note: — Type - In the Type area,
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• Add, Edit, and Delete Marker Oc
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• Reset Automatic Range Adjustmen
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5.3 Menus Menus provide access to C
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— Video Data Input File (AVI) - T
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After verifying that the correct fi
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• Which Markers - The default val
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• File - Type an export file name
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5.3.2 Edit Menu The following illus
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Note: The Edit Marker dialog box ma
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• Marker - This box shows the mar
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5.3.4.7 Step Forward This button ad
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5.3.6 Find Menu The following illus
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• Generate Selected - This button
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• Generate All - This button gene
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— Zone Interval • Operation to
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5.3.7.5 Snap-To Marker Occurrences
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— max - the largest time differen
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5.3.7.8.1 General Tab. • Initial
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5.3.7.8.3 Latency Correction Tab. F
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5.3.7.8.5 Audio Tab. • Available
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— Background - This is the backgr
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5.4 Toolbars CinePlex Editor includ
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5.5 How CinePlex Editor Creates Ini
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then load a neural data file that c
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Marker Type Abbr Information Stored
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From the Marker Occurrences window
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Note that applying this correction
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Snap-To Marker Occurrences tool des
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5.10 Analyzing CinePlex Studio data
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Plexon Inc Appendix A Installation
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Procedure for MAP/CPX Computer Hard
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A.2 Installation - Software This se
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3 The End User License Agreement wi
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7 The Select Program Manager Group
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11 The following window appears twi
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14 Click Next on the window below.
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18 The CinePlex installation has no
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3 The End User License Agreement wi
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7 The Select Program Manager Group
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11 Next, the Sentinel Key Drivers a
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15 Click Finish on the window below
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2 The Welcome window appears. Press
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6 The Select Components window appe
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10 Nothing else will be installed,
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3 After step 6 continue the procedu
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Note: to remote upgrades. If a remo
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Plexon Inc Appendix B Problem Resol
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toggle switch above these connector
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the CinePlex software will be requi
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1 Remove the TIM card and check tha
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1 Stop running all unnecessary appl
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B.3 CinePlex Studio Messages The ta
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Table 1: CinePlex Studio Simple Mes
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Table 2: CinePlex Studio Critical M
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Plexon Inc Appendix C Lens Selectio
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C.2 Lens Selection For CinePlex Ver
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C.3 Experiment Design C.3.1 Field o
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The formula to calculate the optimu
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3 Three Arm Phenolic Knob (small) -
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• A local professional camera or
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a Place the sandwich plate on the o
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7 The tripod adaptor should already
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Port 1 Port 2 Port 1 Port 2 Port 3
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3 Using the Plexon camera mounting
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Plexon Inc Appendix D Plexon User I
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D.2 Screen Elements D.2.1 Menus The
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D.2.2 Toolbars Each toolbar has a d
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• Close Button - The Close button
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— Hidden Windows - Docked windows
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D.3 Standard Menu Items and Dialogs
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D.3.2 Run Menu The purpose of the R
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— Licensing - Clicking the Licens
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D.3.4 Messages Window The Messages
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D.4 Customization Although the menu
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• Category - This is a list of al
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• Buttons - The toolbar buttons a
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Plexon Inc Appendix E Cabling Guide
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E.2 Typical MAP/CPX Cabling Diagram
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E.3 Typical MAP/CPX System Cabling
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E.3.2 MAP/CPX System with Two Video
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E.4 MAP/CPX Cable Images Version 3.
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E.5.2.2 With CHUB Version 3.0 E-11
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E.5.3.2 Two Video Cameras Version 3
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* CinePlex, Plexon, and the Plexon
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