LabChip GX/GXII User Manual

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Software Reference 132Overlay Electropherograms TabUse the Overlay Electropherograms tab on the Graph View to viewa single graph or multiple graphs overlaid on top of each other.Figure 44. Overlay Electropherograms TabThe sample list at the upper right displays the name of each sampleand the color assigned to the graph for each sample. If only onegraph is displayed, the Gel View, Well Table View, and Plate Viewor Plate List all show the same selected well.The gel lanes selected in the Gel View are synchronized with thegraphs displayed in the Overlay Electropherograms tab.For information on changing the view in the OverlayElectropherograms tab, see “Viewing Graphs in the OverlayElectropherograms Tab” on page 77.See “Graph View Properties” on page 134 for descriptions of theproperties that can be set for the Overlay Electropherograms tab.P/N 127170 Rev. 00 LabChip GX User Manual Caliper Life Sciences, Inc.
Software Reference 133Electropherograms TabUse the Electropherograms tab on the Graph View to view a singlegraph or multiple graphs in the same tab.Figure 45. Electropherograms TabEach graph displays the data file name and well name at the top ofthe graph.For information on changing the view properties in theElectropherograms tab, see “Viewing Graphs in theElectropherograms Tab” on page 78.See “Graph View Properties” on page 134 for descriptions of theproperties that can be set for the Electropherograms tab.P/N 127170 Rev. 00 LabChip GX User Manual Caliper Life Sciences, Inc.
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LabChipGX/GX IIUser ManualCopyright
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Preface 3For support in Europe cont
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Preface 5Table 1. Important Symbols
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Instrument Safety 7Required Trainin
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Instrument Safety 9Laser SafetyWARN
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Instrument Safety 11InternationalAl
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Table of Contents 13Viewing the EFs
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Table of Contents 15Login Window...
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Introduction 17IntroductionThis man
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Introduction 19Principles of Operat
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Operation 21OperationThis section i
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Operation 23Running an AssayTo star
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Operation 25Running an Assay (Conti
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Operation 27Monitoring the RunThe f
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Operation 29Continuing a Stopped Ru
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Operation 31Saving Data Files (Cont
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Operation 33Adding a New Plate (Con
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Data Analysis 35Data AnalysisAfter
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Data Analysis 37How the Software An
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Data Analysis 51Opening a Data File
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Data Analysis 53Selecting the Wells
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Data Analysis 55To import the sampl
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Data Analysis 57Using Expected Frag
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Data Analysis 59Forcing Expected Pe
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Data Analysis 61Viewing the EFs/EPs
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Data Analysis 63Changing the Peak F
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Data Analysis 65Merging Two PeaksIf
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Data Analysis 67Using the Default L
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Data Analysis 69Upper and Lower Mar
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Data Analysis 71Lower Marker Peaks
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Data Analysis 73Viewing GelsTo comp
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Data Analysis 75Adjust Pane WidthsT
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Data Analysis 77Viewing Graphs in t
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Data Analysis 79Viewing Multiple Pr
Page 81 and 82: Data Analysis 81Reanalyzing a Data
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Page 85 and 86: Data Analysis 85Peak TableChoosing
Page 87 and 88: Data Analysis 87Raw DataASCII text
Page 89 and 90: Data Analysis 89Exporting Data Manu
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Page 93 and 94: Software Security 93Managing User A
Page 95 and 96: Software Security 95Changing User I
Page 97 and 98: Software Security 97Changing Access
Page 99 and 100: Software Security 99Setting Policie
Page 101 and 102: Software Security 101Electronic Sig
Page 103 and 104: Software Security 103Audit TrailLab
Page 105 and 106: Software Security 105Exporting the
Page 107 and 108: Software Security 107Creating New D
Page 109 and 110: Software Security 109Remote CDR Ser
Page 111 and 112: Software Security 111Backing Up Dat
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Page 115 and 116: Software Reference 115Menu BarThe m
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Page 119 and 120: Software Reference 119Security Menu
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Page 125 and 126: Software Reference 125Rename Plate
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Page 129 and 130: Software Reference 129Graph View (C
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Page 137 and 138: Software Reference 137Gel View (Con
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Page 141 and 142: Software Reference 141Peak Table Vi
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Page 149 and 150: Software Reference 149Filter View (
Page 151 and 152: Software Reference 151Add New Expec
Page 153 and 154: Software Reference 153Assay Analysi
Page 155 and 156: Software Reference 155Alignment Tab
Page 157 and 158: Software Reference 157Analysis Tab
Page 159 and 160: Software Reference 159Peak Find Tab
Page 161 and 162: Software Reference 161Table 2. Well
Page 163 and 164: Software Reference 163Expected Frag
Page 165 and 166: Software Reference 165Excluded Peak
Page 167 and 168: Software Reference 167Smear Analysi
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Page 171 and 172: Software Reference 171Advanced TabU
Page 173 and 174: Software Reference 173Audit Trail W
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Page 177 and 178: Software Reference 177DeleteButtonH
Page 179 and 180: Software Reference 179CDR Utility W
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Software Reference 183Event Viewer
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Software Reference 185Export Window
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Software Reference 187Installation
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Software Reference 189Login WindowU
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Software Reference 191Perform Signa
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Software Reference 193Print WindowU
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Software Reference 195Print Validat
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Software Reference 197Run File Edit
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Software Reference 199Sample Name E
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Software Reference 201Save Workspac
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Software Reference 203Start Run Win
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Software Reference 205Run Tab (Cont
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Software Reference 207Output Tab (C
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Software Reference 209Advanced Tab
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Software Reference 211System Diagno
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Software Reference 213User Administ
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Software Reference 215Edit UsersUse
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Software Reference 217De/Activate U
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Software Reference 219Show/Hide in
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LabChip GX Instrument Description 2
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Maintenance and Service 231Maintena
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Troubleshooting and Diagnostics 233
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Glossary of Terms 247Glossary of Te
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Glossary of Terms 249CLAThe file ex
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Glossary of Terms 251Data Filtering
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Glossary of Terms 253GXD FilesThe f
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Glossary of Terms 255Figure 115. Sl
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Glossary of Terms 257Ladder Analysi
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Glossary of Terms 259Peak BaselineA
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Glossary of Terms 261Polynomial Ord
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Glossary of Terms 263For the purpos
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Glossary of Terms 265SmearSpecifies
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Glossary of Terms 267Figure 120. Pr
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Glossary of Terms 269WorkspaceZero
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Caliper Life Sciences, Inc. Product
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Caliper Life Sciences, Inc. Softwar
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Index 275IndexNumerics21 CFR Part 1
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Index 277showing. . . . . . . . . .
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Index 279clearing default ladder .
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Index 281Remote CDR Server . . . .
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Index 283Waste wells . . . . . . .
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LabChip GX/GXII User Manual

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