LabChip GX/GXII User Manual

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Software Reference 198Run Info WindowUse the Run Info window to view information about the run optionsfor the selected plate data file.To open the Run Info window, select View Run Info on theLabChip GX Main Window, or right-click on the name of the data fileabove the plate diagram and select Run Info.Figure 86. Run Info WindowThe information in this window is view-only and cannot be changed.The Run Info tab displays assay information and run information.The Event Log tab displays the events that occurred during therun.The Run Info window contains the following buttons:PrintPreviewPrintCancelOpens the Print Preview window to view the run information beforeprinting.Opens the Print window to print the run information.Closes the Run Info window.P/N 127170 Rev. 00 LabChip GX User Manual Caliper Life Sciences, Inc.
Software Reference 199Sample Name Editor WindowUse the Sample Name Editor window to specify names for thesamples in the plate. For DNA, Protein, and Glycan assays, alsocan be used to view, add, edit, or delete expected peaks. SampleNames can be exported to a .CSV file to be re-used in otherworkspaces or for other plates.To open the Sample Name Editor window, choose Tools SampleName Editor on the LabChip GX Main Window.Figure 87. Sample Name Editor WindowEdit Expected Peaks check box - If selected, displays theExpected Peaks and Window (%) columns for DNA, Protein, andGlycan assays. This option is not available for RNA assays.The following columns display in the Sample Name Editor window:ColumnWell LabelSample NameSampleCommentDescriptionDisplays the row letter and column number of each well.The sample name for the sample in the specified well. Type anew name to change the sample name.Any comment to be associated with each well of the plate.Displays in the Well Table View.P/N 127170 Rev. 00 LabChip GX User Manual Caliper Life Sciences, Inc.
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LabChipGX/GX IIUser ManualCopyright
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Preface 3For support in Europe cont
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Preface 5Table 1. Important Symbols
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Instrument Safety 7Required Trainin
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Instrument Safety 9Laser SafetyWARN
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Instrument Safety 11InternationalAl
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Table of Contents 13Viewing the EFs
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Table of Contents 15Login Window...
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Introduction 17IntroductionThis man
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Introduction 19Principles of Operat
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Operation 21OperationThis section i
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Operation 23Running an AssayTo star
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Operation 25Running an Assay (Conti
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Operation 27Monitoring the RunThe f
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Operation 29Continuing a Stopped Ru
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Operation 31Saving Data Files (Cont
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Operation 33Adding a New Plate (Con
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Data Analysis 35Data AnalysisAfter
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Data Analysis 37How the Software An
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Data Analysis 51Opening a Data File
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Data Analysis 53Selecting the Wells
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Data Analysis 55To import the sampl
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Data Analysis 57Using Expected Frag
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Data Analysis 59Forcing Expected Pe
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Data Analysis 61Viewing the EFs/EPs
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Data Analysis 63Changing the Peak F
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Data Analysis 65Merging Two PeaksIf
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Data Analysis 67Using the Default L
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Data Analysis 69Upper and Lower Mar
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Data Analysis 71Lower Marker Peaks
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Data Analysis 73Viewing GelsTo comp
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Data Analysis 75Adjust Pane WidthsT
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Data Analysis 77Viewing Graphs in t
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Data Analysis 79Viewing Multiple Pr
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Data Analysis 81Reanalyzing a Data
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Data Analysis 83ElectropherogramCho
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Data Analysis 85Peak TableChoosing
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Data Analysis 87Raw DataASCII text
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Data Analysis 89Exporting Data Manu
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Software Security 91• “Backing
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Software Security 93Managing User A
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Software Security 95Changing User I
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Software Security 97Changing Access
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Software Security 99Setting Policie
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Software Security 101Electronic Sig
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Software Security 103Audit TrailLab
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Software Security 105Exporting the
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Software Security 107Creating New D
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Software Security 109Remote CDR Ser
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Software Security 111Backing Up Dat
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Software Reference 113Software Refe
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Software Reference 115Menu BarThe m
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Software Reference 117Collection Me
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Software Reference 119Security Menu
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Software Reference 121Chip Status a
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Software Reference 123Error Message
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Software Reference 125Rename Plate
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Software Reference 127Collection Pa
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Software Reference 129Graph View (C
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Software Reference 131Active Data T
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Software Reference 133Electropherog
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Software Reference 135OptionText Or
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Software Reference 137Gel View (Con
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Software Reference 139Gel View Prop
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Software Reference 141Peak Table Vi
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Page 147 and 148: Software Reference 147Filter ViewTh
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Page 151 and 152: Software Reference 151Add New Expec
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Page 157 and 158: Software Reference 157Analysis Tab
Page 159 and 160: Software Reference 159Peak Find Tab
Page 161 and 162: Software Reference 161Table 2. Well
Page 163 and 164: Software Reference 163Expected Frag
Page 165 and 166: Software Reference 165Excluded Peak
Page 167 and 168: Software Reference 167Smear Analysi
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Page 171 and 172: Software Reference 171Advanced TabU
Page 173 and 174: Software Reference 173Audit Trail W
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Page 179 and 180: Software Reference 179CDR Utility W
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Page 185 and 186: Software Reference 185Export Window
Page 187 and 188: Software Reference 187Installation
Page 189 and 190: Software Reference 189Login WindowU
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Page 203 and 204: Software Reference 203Start Run Win
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Page 209 and 210: Software Reference 209Advanced Tab
Page 211 and 212: Software Reference 211System Diagno
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Page 221 and 222: LabChip GX Instrument Description 2
Page 231 and 232: Maintenance and Service 231Maintena
Page 233 and 234: Troubleshooting and Diagnostics 233
Page 247 and 248: Glossary of Terms 247Glossary of Te
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Glossary of Terms 249CLAThe file ex
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Glossary of Terms 251Data Filtering
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Glossary of Terms 253GXD FilesThe f
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Glossary of Terms 255Figure 115. Sl
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Glossary of Terms 257Ladder Analysi
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Glossary of Terms 259Peak BaselineA
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Glossary of Terms 261Polynomial Ord
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Glossary of Terms 263For the purpos
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Glossary of Terms 265SmearSpecifies
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Glossary of Terms 267Figure 120. Pr
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Glossary of Terms 269WorkspaceZero
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Caliper Life Sciences, Inc. Product
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Caliper Life Sciences, Inc. Softwar
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Index 275IndexNumerics21 CFR Part 1
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Index 277showing. . . . . . . . . .
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Index 279clearing default ladder .
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Index 281Remote CDR Server . . . .
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Index 283Waste wells . . . . . . .
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LabChip GX/GXII User Manual

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