LabChip GX/GXII User Manual

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Software Reference 200Expected PeaksWindow (%)Displays the Expected Peaks for DNA, Protein, or Glycanassays. (The Expected Peaks are also displayed in the ExpectedFragments/Proteins/Glycans Tab on the Assay AnalysisWindow.)Only displays if the Edit Expected Peaks check box is selected.Specifies the tolerance window as a percent of the expected sizefor the peak to allow for small variations in expected peak size.Only displays if the Edit Expected Peaks check box is selected.The following buttons are located at the bottom of the SampleName Editor window:ButtonImportExportBlank 96 WellsBlank 384 WellsApplyCloseDescriptionImports a sample name file (*.csv) into the Edit Sample Nameswindow.Exports the current sample names and comments into a .csv file.SeeClears the sample names in the window and creates a newsample name that is the same as the well label for each well in a96 well plate.Clears the sample names in the window and creates a newsample name that is the same as the well label for each well in a384 well plate.Applies the sample name changes to the plate. Sample namescannot be applied during a run.Closes the Edit Sample Names window. If changes have notbeen applied to the plate, prompts you to discard the changes. Tosave the changes, click the Apply button before clicking theClose button.P/N 127170 Rev. 00 LabChip GX User Manual Caliper Life Sciences, Inc.
Software Reference 201Save Workspace As WindowThe Save Workspace File As window saves the currently openworkspace with the specified name in the specified location.To open this window, choose File Save Workspace As. Thiswindow also opens the first time you save a new workspace.Figure 88. Save Workspace As WindowTip: You may want to save the workspace file in the same locationas the plate data files to prevent missing plate data files whenmoving workspace files.P/N 127170 Rev. 00 LabChip GX User Manual Caliper Life Sciences, Inc.
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LabChipGX/GX IIUser ManualCopyright
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Preface 3For support in Europe cont
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Preface 5Table 1. Important Symbols
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Instrument Safety 7Required Trainin
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Instrument Safety 9Laser SafetyWARN
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Instrument Safety 11InternationalAl
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Table of Contents 13Viewing the EFs
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Table of Contents 15Login Window...
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Introduction 17IntroductionThis man
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Introduction 19Principles of Operat
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Operation 21OperationThis section i
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Operation 23Running an AssayTo star
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Operation 25Running an Assay (Conti
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Operation 27Monitoring the RunThe f
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Operation 29Continuing a Stopped Ru
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Operation 31Saving Data Files (Cont
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Operation 33Adding a New Plate (Con
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Data Analysis 35Data AnalysisAfter
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Data Analysis 37How the Software An
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Data Analysis 51Opening a Data File
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Data Analysis 53Selecting the Wells
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Data Analysis 55To import the sampl
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Data Analysis 57Using Expected Frag
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Data Analysis 59Forcing Expected Pe
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Data Analysis 61Viewing the EFs/EPs
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Data Analysis 63Changing the Peak F
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Data Analysis 65Merging Two PeaksIf
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Data Analysis 67Using the Default L
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Data Analysis 69Upper and Lower Mar
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Data Analysis 71Lower Marker Peaks
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Data Analysis 73Viewing GelsTo comp
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Data Analysis 75Adjust Pane WidthsT
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Data Analysis 77Viewing Graphs in t
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Data Analysis 79Viewing Multiple Pr
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Data Analysis 81Reanalyzing a Data
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Data Analysis 83ElectropherogramCho
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Data Analysis 85Peak TableChoosing
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Data Analysis 87Raw DataASCII text
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Data Analysis 89Exporting Data Manu
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Software Security 91• “Backing
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Software Security 93Managing User A
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Software Security 95Changing User I
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Software Security 97Changing Access
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Software Security 99Setting Policie
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Software Security 101Electronic Sig
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Software Security 103Audit TrailLab
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Software Security 105Exporting the
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Software Security 107Creating New D
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Software Security 109Remote CDR Ser
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Software Security 111Backing Up Dat
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Software Reference 113Software Refe
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Software Reference 115Menu BarThe m
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Software Reference 117Collection Me
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Software Reference 119Security Menu
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Software Reference 121Chip Status a
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Software Reference 123Error Message
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Software Reference 125Rename Plate
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Software Reference 127Collection Pa
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Software Reference 129Graph View (C
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Software Reference 131Active Data T
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Software Reference 133Electropherog
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Software Reference 135OptionText Or
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Software Reference 137Gel View (Con
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Software Reference 139Gel View Prop
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Software Reference 141Peak Table Vi
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Software Reference 147Filter ViewTh
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Page 151 and 152: Software Reference 151Add New Expec
Page 153 and 154: Software Reference 153Assay Analysi
Page 155 and 156: Software Reference 155Alignment Tab
Page 157 and 158: Software Reference 157Analysis Tab
Page 159 and 160: Software Reference 159Peak Find Tab
Page 161 and 162: Software Reference 161Table 2. Well
Page 163 and 164: Software Reference 163Expected Frag
Page 165 and 166: Software Reference 165Excluded Peak
Page 167 and 168: Software Reference 167Smear Analysi
Page 169 and 170: Software Reference 169Titer Tab (Co
Page 171 and 172: Software Reference 171Advanced TabU
Page 173 and 174: Software Reference 173Audit Trail W
Page 175 and 176: Software Reference 175Audit Trail M
Page 177 and 178: Software Reference 177DeleteButtonH
Page 179 and 180: Software Reference 179CDR Utility W
Page 181 and 182: Software Reference 181Change Passwo
Page 183 and 184: Software Reference 183Event Viewer
Page 185 and 186: Software Reference 185Export Window
Page 187 and 188: Software Reference 187Installation
Page 189 and 190: Software Reference 189Login WindowU
Page 191 and 192: Software Reference 191Perform Signa
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Page 197 and 198: Software Reference 197Run File Edit
Page 199: Software Reference 199Sample Name E
Page 203 and 204: Software Reference 203Start Run Win
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Page 207 and 208: Software Reference 207Output Tab (C
Page 209 and 210: Software Reference 209Advanced Tab
Page 211 and 212: Software Reference 211System Diagno
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Page 215 and 216: Software Reference 215Edit UsersUse
Page 217 and 218: Software Reference 217De/Activate U
Page 219 and 220: Software Reference 219Show/Hide in
Page 221 and 222: LabChip GX Instrument Description 2
Page 231 and 232: Maintenance and Service 231Maintena
Page 233 and 234: Troubleshooting and Diagnostics 233
Page 247 and 248: Glossary of Terms 247Glossary of Te
Page 249 and 250: Glossary of Terms 249CLAThe file ex
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Glossary of Terms 251Data Filtering
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Glossary of Terms 253GXD FilesThe f
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Glossary of Terms 255Figure 115. Sl
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Glossary of Terms 257Ladder Analysi
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Glossary of Terms 259Peak BaselineA
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Glossary of Terms 261Polynomial Ord
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Glossary of Terms 263For the purpos
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Glossary of Terms 265SmearSpecifies
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Glossary of Terms 267Figure 120. Pr
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Glossary of Terms 269WorkspaceZero
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Caliper Life Sciences, Inc. Product
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Caliper Life Sciences, Inc. Softwar
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Index 275IndexNumerics21 CFR Part 1
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Index 277showing. . . . . . . . . .
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Index 279clearing default ladder .
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Index 281Remote CDR Server . . . .
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Index 283Waste wells . . . . . . .
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LabChip GX/GXII User Manual

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