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Final version of Tropical Legumes II Project Report for Phase 1 - icrisat

Final version of Tropical Legumes II Project Report for Phase 1 - icrisat

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Number <strong>of</strong> crosses made and advanced<br />

Single crosses = 38<br />

Three way crosses = 83<br />

Double cross = 85<br />

Crosses with lines from IER and INRAN = 17 (In F3 and F4 generations)<br />

Screening <strong>for</strong> resistance to aphids<br />

The cowpea aphid (Aphis craccivora) is a major pest <strong>of</strong> cowpea, especially at the seedling stage and<br />

particularly when there is drought. A combination <strong>of</strong> aphid attack and drought could have very devastating<br />

effects on cowpea seedlings in the field. Many <strong>of</strong> the varieties that were developed with resistance to this<br />

pest now succumb to it. We have screened a number <strong>of</strong> cowpea germplasm lines but found very low<br />

levels <strong>of</strong> resistance among them. Wild cowpea relatives were also screened <strong>for</strong> resistance to this pest and<br />

about three <strong>of</strong> them that are cross compatible with cowpea were detected with moderate to good levels<br />

<strong>of</strong> resistance to aphid (Figure 5-8). Ef<strong>for</strong>ts are on to introgress the resistance genes into some FPVs.<br />

Figure 5-8: Reactions <strong>of</strong> some cultivated and wild cowpea seedlings to aphid infestation<br />

Seedlings <strong>of</strong> the cultivated cowpea lines have collapsed following aphid damage while those <strong>of</strong> some<br />

<strong>of</strong> the wild cowpea relatives did not show evidence <strong>of</strong> aphid damage.<br />

Validation <strong>of</strong> molecular markers<br />

Cowpea SNP Marker Validation: As part <strong>of</strong> the collaboration between TL I and TL <strong>II</strong> some molecular<br />

markers found to be associated with desirable traits in cowpea at UC Riverside were validated at the <strong>II</strong>TA<br />

facility, at BECA in Nairobi. Allele-specific primers were designed to capture SNPs linked to important<br />

traits like SUR, Striga, Macrophomina/*CPMVnewb, Macrophomina, Gy-1, Gs-4, Gs-2, Flow-5, Flow-<br />

1/2, Drought, DLS-5/6, DLS-4,DLS-3, DLS-1/2, CoBB-3, CoBB-2/DLS-4, CoBB-2, CoBB-1/CPMVnewb,<br />

CoBB-1, Dehydrin, CPSMV and CPMVnewb. The SNPs were mined from the HarvEST:Cowpea v1.18<br />

s<strong>of</strong>tware which is a principally EST database. In order to design AS-PCR primer <strong>of</strong> extra 3’ mismatch,<br />

WebSNAPER (http://ausubellab.mgh.harvard.edu/) was used. Primers without extra 3’ mismatch were<br />

designed by use <strong>of</strong> DNASTAR Lagergene S<strong>of</strong>tware (www.dnastar.com/). PCR was per<strong>for</strong>med using<br />

AccuPower® PCR PreMix (www.bioneer.com). Total <strong>of</strong> 10 SNPs appeared as reliable plus/minus scoring<br />

on agarose gel <strong>of</strong> the PCR products (Table 5- 11). These are the SNPs, converted to the agarose gel assay<br />

<strong>for</strong>mat and utilized to test 32 samples from a cowpea breeding population at <strong>II</strong>TA.<br />

Progress <strong>of</strong> <strong>Phase</strong> 1<br />

101

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