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natural-products-in-plant-pest-management

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274 S. HettiarachiIn an attempt to restore the ability to produce taxol, an anticancer drug,to an endophytic fungus, Tubercularia sp., mutagenesis and genome shuffl<strong>in</strong>g<strong>in</strong> protoplasts resulted <strong>in</strong> no restoration, but the production of new metabolites(Wang et al., 2010). One mutant produced three new and one alreadyknown sequiterpenoids, whereas another one made 18 novel compoundsbelong<strong>in</strong>g to different classes and 10 already known compounds which werenot present <strong>in</strong> the wild-type stra<strong>in</strong>.Alter<strong>in</strong>g the culture condition alone can <strong>in</strong>duce the production of different<strong>natural</strong> <strong>products</strong> by an <strong>in</strong>dividual organism. If the mechanism of controlof a metabolic pathway is understood, then break<strong>in</strong>g silence <strong>in</strong> expressionshould be simple. Sometimes the presence of another organism <strong>in</strong> theneighbourhood may <strong>in</strong>fluence the <strong>in</strong>duction of a pathway lead<strong>in</strong>g to a previouslyunseen product. Therefore mixed fermentation can result <strong>in</strong> an<strong>in</strong>creased concentration of already expressed or undetected or unexpressedmetabolites <strong>in</strong> crude extract, and the production of new analogues of knownmetabolites due to comb<strong>in</strong>ed or extended pathways (Pettit, 2009).Each and every step of biochemical pathways are supposed be catalysedby a specific enzyme. Nevertheless, the size of the total genome, as unravelledby genome-sequenc<strong>in</strong>g projects, cannot account for the large number ofmetabolites present <strong>in</strong> organisms. Post-transcriptional modifications lead<strong>in</strong>gto the formation of isozymes can be partly responsible for the high diversityof metabolites, but this has now been ma<strong>in</strong>ly attributed to the low specificityof some enzymes, which means that one enzyme can convert several similarprecursors or <strong>in</strong>termediates <strong>in</strong>to several <strong>products</strong> caus<strong>in</strong>g ramifications <strong>in</strong>the next step, and f<strong>in</strong>ally end<strong>in</strong>g up with several end <strong>products</strong>. The numberof end <strong>products</strong> shall be much higher if there was no compartmentalizationof substrates and enzymes with<strong>in</strong> a cell and <strong>in</strong> different cells. Br<strong>in</strong>g<strong>in</strong>g a <strong>natural</strong>substrate <strong>in</strong> one cell <strong>in</strong> contact with an enzyme from another cell mayresult <strong>in</strong> entirely new ‘<strong>natural</strong>’ <strong>products</strong>. This is possible through breed<strong>in</strong>g ofsexually compatible <strong>in</strong>dividuals, or through protoplast fusion, which is possiblebetween rather distant relatives. This technology is known as comb<strong>in</strong>atorialbiosynthesis or metabolic eng<strong>in</strong>eer<strong>in</strong>g or heterologous expression, andhas been applied to microorganisms as well as to <strong>plant</strong>s.Polyketides are highly diverse <strong>natural</strong> <strong>products</strong>, <strong>in</strong>clud<strong>in</strong>g those importantas antibiotics and other pharmaceuticals such as anticancer agents andimmunosuppressors. The most important producers are act<strong>in</strong>omycetes, butother bacteria, fungi, <strong>plant</strong>s and mar<strong>in</strong>e animals also conta<strong>in</strong> polyketides.They are formed by the sequential polymerization of carboxylic acids, and assuch carboxylic acid monomers become a source of variation <strong>in</strong> polyketides.The diversity has been possible due the modular nature of the polyketidesynthases (PKSs). Once transcribed, the peptides assemble to make the functionalenzyme consist<strong>in</strong>g of different number of polypetides, each hav<strong>in</strong>gtwo modules. The large prote<strong>in</strong> adds one monomer at each module to thegrow<strong>in</strong>g cha<strong>in</strong>. Mutagenesis <strong>in</strong> each module is possible and the outcome ofeach mutation and comb<strong>in</strong>ations of those can cause a great variety ofpolyketides (Kosla, 1997). The first polypeptide <strong>in</strong> the assembly of themegasynthase <strong>in</strong>itiates polymerization and is the m<strong>in</strong>imal PKS conta<strong>in</strong><strong>in</strong>g

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