Colletotrichum: complex species or species ... - CBS - KNAW

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Weir et al.11ICMP 17789 Malus USA1ICMP 17819 Fragaria CanadaICMP 18609 Fragaria USAICMP 18120 Dioscorea NigeriaICMP 17787 Malus Brazil1ICMP 17788 Malus BrazilICMP 18125 Dioscorea NigeriaICMP 17921 Glomerella cingulata var. minor Ficus GermanyICMP 18645 Theobroma Panama0.96 ICMP 18667 Limonium IsraelICMP 18613 Limonium Israel0.98ICMP 18615 Limonium Israel0.97 ICMP 18610 Pyrus JapanICMP 18698 Limonium Israel1 1 ICMP 18727 Fragaria USAICMP 18581 C. fructicola Coffea Thailand0.99 ICMP 12568 Persea AustraliaICMP 18646 C. ignotum Tetragastris Panama1 ICMP 18187 C. nupharicola Nuphar USA11 ICMP 17940 Nuphar USAICMP 17938 Nuphar USA0.92 ICMP 12071 C. alienum Malus New ZealandICMP 18691 Persea AustraliaICMP 18704 Persea New ZealandICMP 12068 Malus New Zealand1ICMP 17972 Diospyros New ZealandICMP 18703 Persea New ZealandICMP 18725 Malus New ZealandICMP 18621 Persea New ZealandICMP 17817 Musa Kenya1 0.991 ICMP 12931 Musa New Zealand (imported)ICMP 17923 Musa Indonesia0.95ICMP 18600 Musa Philippines1ICMP 12930 Musa New ZealandICMP 19119 C. musae Musa USA98ICMP 18701 Musa Philippines1 ICMP 18608 C. aenigma Persea IsraelICMP 18686 Pyrus Japan1 ICMP 18739 Carica South Africa0.92 ICMP 18572 Vitis USA0.51 ICMP 18571 Fragaria USA1 ICMP 18118 Commelina Nigeria0.74 ICMP 18117 Dioscorea Nigeria0.68ICMP 18578 C. siamense Coffea ThailandICMP 17795 Malus USA0.981 ICMP 18570 Persea South Africa1 ICMP 12567 Persea AustraliaICMP 12565 Persea Australia1 ICMP 18573 Vitis USAICMP 17785 Malus USA0.68ICMP 18643 Hymenocallis China0.53ICMP 18642 C. hymenocallidis Hymenocallis China1 ICMP 17797 Malus USAICMP 17791 Malus USAICMP 18569 Persea South Africa1 ICMP 18574 Pistacia Australia0.831 ICMP 18575 Capsicum ThailandICMP 18618 Capsicum Thailand0.99 0.99ICMP 19118 C. jasmini-sambac Jasminum VietnamICMP 18121 Dioscorea Nigeria1ICMP 17673 C. gloeosporioides “f. sp. aeschynomenes” Aeschynomene USA1 ICMP 18653 C. tropicale Theobroma Panama1 ICMP 18651 Annona PanamaICMP 18672 Litchi Japan11 ICMP 1780 Carica Australia1 ICMP 12564 Persea Australia1ICMP 1778 C. gloeosporioides var. minus Carica Australia1 ICMP 18705 Coffea Fiji1 ICMP 18693 Glycine (inoculated) HungaryICMP 19051 C. gloeosporioides “f. sp. salsolae” Salsola HungaryICMP 18605 Mangifera ThailandICMP 18648 Mangifera Panama1ICMP 18696 Mangifera AustraliaICMP 18603 Mangifera PhilippinesICMP 18580 C. asianum Coffea Thailand0.88 ICMP 12939 Citrus New ZealandICMP 18678 Pueraria USA0.76 ICMP 17821 C. gloeosporioides Citrus Italy0.78 ICMP 18738 Carya AustraliaICMP 12938 Citrus New Zealand1ICMP 18694 Mangifera South AfricaICMP 18695 Citrus USAICMP 18730 Citrus New ZealandICMP 12066 Ficus New Zealand0.99ICMP 18697 Vitis USAICMP 19121 Gloeosporium pedemontanum lemon drink Italy1 ICMP 18122 Dioscorea NigeriaICMP 17919 C. gloeosporioides “f. alatae” Dioscorea IndiaC. fructicolaC. nupharicolaC. alienumC. musaeC. aenigmaC. siamenseC. aeschynomenesC. tropicaleC. queenslandicumC. salsolaeC. asianumC. gloeosporioides(sensu stricto)C. alataeFig. 1. A Bayesian inference phylogenetic tree of 156 isolates in the Colletotrichum gloeosporioides species complex. The tree was built using concatenated sequences of theACT, CAL, CHS-1, GAPDH, and ITS genes each with a separate model of DNA evolution. Bayesian posterior probability values ≥ 0.5 are shown above nodes. Culture accessionnumbers are listed along with host plant genus and country of origin. Ex-type and authentic cultures are emphasised in bold font, and include the taxonomic name as originallydescribed. Species delimitations are indicated with grey boxes. Colletotrichum boninense and C. hippeastri isolates are used as outgroups. The scale bar indicates the numberof expected changes per site.126
The Colletotrichum gloeosporioides species complex1ICMP 17814 Fragaria USA0.99ICMP 17099 Fragaria USAICMP 17927 C. fragariae Fragaria USA11 ICMP 18649 C. theobromicola Theobroma PanamaICMP 18650 Theobroma Panama0.72 ICMP 17100 Quercus USAICMP 18567 Olea Australia0.99ICMP 17958 Stylosanthes Australia0.610.64 ICMP 15445 Acca New ZealandICMP 17895 Annona Mexico1 ICMP 17957 C. gloeosporioides f. stylosanthis Stylosanthes Australia1 ICMP 18565 Olea AustraliaICMP 18566 Olea Australia0.88ICMP 18576 Limonium Israel1 ICMP 17903 C. xanthorrhoeae Xanthorrhoea AustraliaICMP 17820 Xanthorrhoea AustraliaICMP 10492 C. horii Diospryos Japan1ICMP 17970 Diospryos Japan0.85ICMP 17968 Diospryos China1C. horiiICMP 12951 Diospryos New ZealandICMP 12942 Diospryos New Zealand1 ICMP 18543 Melicytus New Zealand0.93 ICMP 17324 Kunzea New ZealandICMP 18533 Prumnopitys New ZealandICMP 18528 Berberis New Zealand0.97 ICMP 18535 Dacrycarpus New Zealand0.68 ICMP 18734 Berberis New ZealandICMP 18540 Geniostoma New Zealand0.99 ICMP 18532 Vitex New ZealandICMP 17326 Podocarpus New Zealand0.54 ICMP 18577 Coprosma New Zealand0.66 ICMP 18536 Coprosma New ZealandC. aotearoa0.82 ICMP 18541 Coprosma New ZealandICMP 18537 C. aotearoa Coprosma New Zealand0.66ICMP 18530 Vitex New ZealandICMP 18735 Hedychium New Zealand0.79 ICMP 18548 Coprosma New ZealandICMP 18736 Lonicera New Zealand1 0.69ICMP 18748 Ligustrum New Zealand0.830.69 ICMP 18742 Meryta New Zealand0.53 ICMP 18740 Dysoxylum New ZealandICMP 18529 Acmena New Zealand1 ICMP 4832 C. ti Cordyline New ZealandICMP 5285 Cordyline New ZealandC. tiICMP 12952 Persea New Zealand1ICMP 18531 Persea New ZealandICMP 12953 Persea New ZealandICMP 17915 Coffea Angola0.96ICMP 17905 Coffea CameroonICMP 18544 Toronia New ZealandICMP 17932 Dryandra South AfricaICMP 17922 Glomerella cingulata var. migrans Hypericum GermanyICMP 17816 C. kahawae subsp. kahawae Coffea Kenya1 ICMP 18741 Kunzea New ZealandC. kahawaeICMP 18534 Kunzea New Zealand0.75ICMP 17931 Dryas SwitzerlandICMP 18539 C. kahawae subsp. ciggaro Olea AustraliaICMP 18728 Miconia Brazil0.99 ICMP 19122 Glomerella rufomaculans var. vaccinii Vaccinium USAICMP 17928 Coffea KenyaICMP 17811 Coffea Malawi10.97 ICMP 10643 Glomerella cingulata “f. sp. camelliae” Camellia UK1 ICMP 18542 Camellia USA0.99 ICMP 10646 Camellia USA1 ICMP 18706 Vitis USAICMP 18658 C. gloeosporioides “f. sp. clidemiae”Clidemia USAICMP 19120 C. psidii Psidium ItalyICMP 18579 C. cordylinicola Cordyline Thailand1ICMP 17904 C. boninense Crinum JapanICMP 17920 C. hippeastri Hippeastrum NetherlandsC. theobromicolaC. xanthorrhoeaeGlomerella cingulata “f. sp.camelliae”C. clidemiaeC. psidiiC. cordylinicolaFig. 1. (Continued).1.0parts of the world, but has been isolated from other hosts as well,such as Ficus, Mangifera, Pueraria, and Vitis. Not all of the specieswith a broad host range are found everywhere, for example in NewZealand C. alienum is commonly associated with cultivated fruits,whereas species such as C. siamense and C. fructicola, commonon these same cultivated fruits in other parts of the world, have notbeen reported from New Zealand.TaxonomyBased on results of the multigene concatenated BI phylogenies,we accept 22 species plus one subspecies within the C.gloeosporioides complex. Isolates authentic for G. cingulata “f.sp. camelliae” form a genetically distinct group, but this is notformally named because of doubts over its relationship to C.camelliae. Based on DNA sequence comparisons, a few otherisolates almost certainly represent additional unnamed species.We do not formally describe them because most are known froma single isolate, often stale, with little understanding of either theirmorphological or biological diversity. In the Musae clade theseinclude ICMP 18614 and ICMP 18616, both from grape fromJapan, and ICMP 18726 from pawpaw from the Cook Islands,and in the Kahawae clade ICMP 18699 from chestnut from Japan.These isolates are not included in the phylogenies in this study,www.studiesinmycology.org127
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Studies in Mycology 73 (September 2
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Colletotrichum: complex species or
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Damm et al.Table 1. Strains of Coll
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Damm et al.Table 1. (Continued).Gen
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Damm et al.combined sequence datase
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Damm et al.Fig. 2. Colletotrichum a
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The Colletotrichum boninense specie
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available online at www.studiesinmy
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The Colletotrichum acutatum species
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Page 140 and 141: Weir et al.Conidial width variation
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Page 144 and 145: Weir et al.Fig. 10. Colletotrichum
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Page 158 and 159: Weir et al.Specimen examined: Thail
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Cannon et al.182
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Cannon et al.In rare instances, Col
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Cannon et al.Table 1. Summary of pr
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Cannon et al.Table 1. (Continued).P
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Cannon et al.Table 2. Colletotrichu
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Cannon et al.as did those for Colle
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Cannon et al.Table 3. Authentic seq
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Cannon et al.Table 3. (Continued).S
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Cannon et al.110.74 C. cuscutae IMI
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Cannon et al.Boninense cladeThe bon
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Cannon et al.C. lindemuthianum AB08
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Cannon et al.A further important ac
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Cannon et al.Hawksworth DL (2011).
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Cannon et al.Rodríguez-Guerra R, R
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Studies in MycologyStudies in Mycol
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CBS Biodiversity SeriesNo. 11:Taxon
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Studies in Mycology (ISSN 0166-0616
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