Colletotrichum: complex species or species ... - CBS - KNAW

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Cannon et al.110.74 C. cuscutae IMI 304802 HTC. fioriniae CBS 128517 HT0.77 C. limetticola CBS 114.14 ETC. costaricense CBS 330.75 HT0.65 C. lupini CBS 109225 NTC. tamarilloi CBS 129814 HTC. melonis CBS 159.84 HTC. guajavae IMI 350839 HT0.59 C. paxtonii IMI 165753 HTC. simmondsii CBS 122122 HT0.73 C. nymphaeae CBS 515.78 ETC. scovillei CBS 126529 HT0.53C. chrysanthemi IMI 364540 §*C. laticiphilum CBS 112989 HT0.79 C. brisbanense CBS 292.67 HTC. carthami SAPA100011 ETC. indonesiense CBS 127551 HTC. sloanei IMI 364297 HTC. walleri CBS 125472 HTC. acerbum CBS 128530 HTC. johnstonii CBS 128532 HT1 C. pyricola CBS 128531 HTC. australe CBS 116478 HT1C. phormii CBS 118194 ET1 C. kinghornii CBS 198.35 HTC. salicis CBS 607.94 ET1C. rhombiforme CBS 129953 HTC. godetiae CBS 133.44 HT0.99C. cosmi CBS 853.73 HTC. acutatum CBS 112996 ET0.58C. orchidophilum CBS 632.80 HTC. pseudoacutatum CBS 436.77 HT0.98C. rusci CBS 119206 HTC. trichellum CBS 217.64 §*0.670.69C. graminicola CBS 130836 ETC. navitas CBS 125086 HTC. paspali MAFF 305403 HT0.561 C. jacksonii MAFF 305460 HT0.99 C. echinochloae MAFF 511473 HTC. hanaui MAFF 305404 HT0.92 0.58C. falcatum CBS 147945 NTC. eleusines MAFF 511155 ET0.901 C. eremochloae CBS 129661 HT0.920.840.54C. sublineolum CBS 131301 ETC. miscanthi MAFF 510857 HTC. nicholsonii MAFF 511115 HTC. cereale CBS 129663 ET0.570.720.92C. destructivum CBS 149.34 §*C. higginsianum IMI 349063 §*0.76 C. tabacum CBS 161.53 §*1C. fuscum CBS 130.57 §*C. linicola CBS 172.51 §*G. truncata CBS 127604 §*0.570.93 C. anthrisci CBS 125334 HT1 C. fructi CBS 346.37 ET0.891 C. dematium CBS 125.25 ETC. lineola CBS 125337 ET1 C. circinans CBS 221.81 ETC. spinaciae CBS 128.57 §*0.920.99C. liriopes CBS 119444 HTC. verruculosum IMI 45525 HT0.620.980.92C. lilii CBS 109214 §*C. spaethianum CBS 167.49 ETC. tofieldiae CBS 495.85 §*C. coccodes CBS 369.75 NT0.70 C. siamense ICMP 18578 HT0.73 C. gloeosporioides ICMP 17821 ET0.62 C. aeschynomenes ICMP 17673 HTC. fructicola ICMP 17921 HTC. nupharicola ICMP 18187 HT0.83 C. musae ICMP 19119 ETC. alatae ICMP 17919 HT1C. asianum ICMP 18580 HTC. aenigma ICMP 18608 HTC. alienum ICMP 12071 HT0.79C. queenslandicum ICMP 1778 ETC. salsolae ICMP 19051 HTC. tropicale ICMP 18653 HTC. xanthorrhoeae ICMP 17903 HTC. theobromicola ICMP 18649 NTC. aotearoa ICMP 18537 HT0.86 C. ti ICMP 4832 HTC. clidemiae ICMP 18658 HT1C. horii ICMP 10492 NTC. kahawae ICMP 17816 HTC. cordylinicola ICMP 18579 HTC. psidii ICMP 19120 AUT0.510.99C. brassicicola CBS 101059 HTC. colombiense CBS 129818 HT0.540.50C. beeveri CBS 128527 HTC. cymbidiicola IMI 347923 HTC. oncidii CBS 129828 HT0.90C. boninense CBS 123755 HT1C. karstii CGMCC 3.14194 HTC. phyllanthi CBS 175.67 IT0.88C. annellatum CBS 129826 HT0.68C. petchii CBS 378.94 ETC. torulosum CBS 128544 HTC. novae-zelandiae CBS 128505 HTC. constrictum CBS 128504 HT10.650.991C. dacrycarpi CBS 130241 HT0.90 C. brasiliense CBS 128501 HT11 C. parsonsiae CBS 128525 HTC. hippeastri CBS 125376 HT11 C. truncatum CBS 151.35 ETC. jasminigenum MFLUCC 10 0273 HTC. curcumae IMI 288937 ETC. chlorophyti IMI 103806 HT1C. dracaenophilum CBS 118199 HTC. yunnanense CBS 132135 HTC. cliviae CBS 125375 HTC. lindemuthianum CBS 144.31 §*C. orbiculare CBS 514.97 §*Monilochaetes infuscans CBS 869.960.3Fig. 2. Phylogenetic tree derived from a Bayesian analysis of an alignment of ITS (599 bp) sequences, run for 1×10 7 generations with a GTR+I+Γ model of DNA evolution.Species names are followed by culture number, and status of the culture, where HT = ex-holotype, ET = epitype, NT = ex-neotype, IT = ex-isotype, AUT = authentic culture.Sequences from a number of non-validated cultures have been included in order to represent clades that have not yet been subject to revision based on multilocus data. Theseare indicated by the symbol §*.orchidophilum as sister taxon. The clade, along with a smallnumber of outlying taxa, forms a sister taxon to a combinationof the destructivum, graminicola and spaethianum clades andC. coccodes. Two principal subclades may be detected withinthe acutatum clade, containing 19 and nine species respectively,and C. acutatum sensu stricto is resolved as an outlier of a202
Colletotrichum – current status and future directions11 C. paxtonii IMI 165753 HT0.88 C. simmondsii CBS 122122 HT0.79 C. sloanei IMI 364297 HTC. nymphaeae CBS 515.78 ET1 C. guajavae IMI 350839 HTC. scovillei CBS 126529 HT1 C. walleri CBS 125472 HT0.88 C. cosmi CBS 853.73 HTC. chrysanthemi IMI 364540 §*C. indonesiense CBS 127551 HTC. laticiphilum CBS 112989 HT1C. brisbanense CBS 292.67 HTC. carthami SAPA100011 ET0.96 C. limetticola CBS 114.14 ETC. costaricense CBS 330.75 HT0.89 0.94 C. lupini CBS 109225 NT acutatum1 C. tamarilloi CBS 129814 HT1C. cuscutae IMI 304802 HTC. melonis CBS 159.84 HTC. fioriniae CBS 128517 HTC. acutatum CBS 112996 ET1 0.70 C. australe CBS 116478 HTC. phormii CBS 118194 ET0.79 C. kinghornii CBS 198.35 HT0.92 1 C. acerbum CBS 128530 HT1C. rhombiforme CBS 129953 HT1 C. salicis CBS 607.94 ET1 C. johnstonii CBS 128532 HT11 C. pyricola CBS 128531 HT1C. godetiae CBS 133.44 HTC. orchidophilum CBS 632.80 HTC. pseudoacutatum CBS 436.77 HT1C. rusci CBS 119206 HTC. trichellum CBS 217.64 §*11 C. jacksonii MAFF 305460 HTC. echinochloae MAFF 511473 HT0.57C. hanaui MAFF 305404 HTC. falcatum CBS 147945 NTC. eleusines MAFF 511155 ET1C. nicholsonii MAFF 511115 HT1C. paspali MAFF 305403 HT1 1C. graminicola CBS 130836 ET1C. navitas CBS 125086 HT11 C. eremochloae CBS 129661 HTgraminicolaC. sublineoa CBS 131301 ETC. miscanthi MAFF 510857 HT1C. cereale CBS 129663 ET0.64 C. liriopes CBS 119444 HT1 C. tofieldiae CBS 495.85 §*0.83C. verruculosum IMI 45525 HTspaethianum1 C. lilii CBS 109214 §*0.66C. spaethianum CBS 167.49 ET0.731 C. fuscum CBS 130.57 §*10.98C. higginsianum IMI 349063 §*11C. tabacum CBS 161.53 §*C. destructivum CBS 149.34 §* destructivum1C. linicola CBS 172.51 §*G. truncata CBS 127604 §*1C. coccodes CBS 369.75 NT1 C. dematium CBS 125.25 ET0.99 C. lineola CBS 125337 ET1C. fructi CBS 346.37 ET0.99C. anthrisci CBS 125334 HT1 C. circinans CBS 221.81 ETdematiumC. spinaciae CBS 128.57 §*C. chlorophyti IMI 103806 HT0.81 C. aeschynomenes ICMP 17673 HTC. fructicola ICMP 17921 HT0.64C. nupharicola ICMP 18187 HTC. alienum ICMP 12071 HTC. queenslandicum ICMP 1778 ET0.831C. salsolae ICMP 19051 HTC. asianum ICMP 18580 HTC. siamense ICMP 18578 HT0.59 C. aenigma ICMP 18608 HT0.71 C. tropicale ICMP 18653 HT0.99 C. musae ICMP 19119 ETgloeosporioides0.73 C. gloeosporioides ICMP 17821 ET1C. alatae ICMP 17919 HTC. xanthorrhoeae ICMP 17903 HT0.890.98 C. clidemiae ICMP 18658 HT0.98 C. kahawae ICMP 17816 HT0.89 C. psidii ICMP 19120 AUT10.910.99C. cordylinicola ICMP 18579 HTC. aotearoa ICMP 18537 HTC. ti ICMP 4832 HT1C. theobromicola ICMP 18649 NTC. horii ICMP 10492 NT1 C. torulosum CBS 128544 HT0.99 C. boninense CBS 123755 HTC. cymbidiicola IMI 347923 HT1 C. oncidii CBS 129828 HT0.790.85 C. colombiense CBS 129818 HT0.861 C. beeveri CBS 128527 HT0.58C. brassicicola CBS 101059 HT0.76 C. karstii CGMCC 3.14194 HT1 11C. phyllanthi CBS 175.67 ITboninenseC. annellatum CBS 129826 HTC. petchii CBS 378.94 ET0.951C. novae-zelandiae CBS 128505 HT11C. brasiliense CBS 128501 HT0.96 1 C. parsonsiae CBS 128525 HTC. hippeastri CBS 125376 HT1HTC. constrictum CBS 128504C. dacrycarpi CBS 130241 HT11 C. truncatum CBS 151.35 ETC. jasminigenum MFLUCC 10-0273 HTC. curcumae IMI 288937 ET1C. dracaenophilum CBS 118199 HTtruncatumC. yunnanense CBS 132135 HT1C. cliviae CBS 125375 HTC. lindemuthianum CBS 144.31 §*C. orbiculare CBS 514.97 §*orbiculareMonilochaetes infuscans CBS 869.960.05Fig. 3. Phylogenetic tree derived from a Bayesian analysis of a partitioned, concatenated alignment of CHS-1 (251 bp), ACT (305 bp), TUB2 (545 bp) and ITS (599 bp)sequences, run for 1×10 7 generations with a GTR+I+Γ model of DNA evolution for each partition. The major clades recognised in this paper are indicated. Other details as perFig. 2.clade consisting of the larger of the two subclades along with C.fioriniae. The acutatum clade can be effectively resolved usingITS sequence data alone (Fig. 2). The major subclades are alsodistinguishable using ITS alone, but the analysis reveals little or nointernal structure within the subclades. A comprehensive account ofits constituent species can be found as Damm et al. (2012a).www.studiesinmycology.org203
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Studies in Mycology 73 (September 2
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Colletotrichum: complex species or
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Damm et al.Table 1. Strains of Coll
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Damm et al.Table 1. (Continued).Gen
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Damm et al.combined sequence datase
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Damm et al.Fig. 2. Colletotrichum a
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The Colletotrichum boninense specie
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available online at www.studiesinmy
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The Colletotrichum acutatum species
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Damm et al.µm diam. Setae not obse
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Damm et al.Table 2. Conidia measure
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Damm et al.Table 2. (Continued).Spe
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Damm et al.Table 3. Appressoria mea
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Damm et al.Fig. 25. Colletotrichum
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Damm et al.to olivaceous grey, filt
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Damm et al.are formed directly from
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Damm et al.Arx JA von (1957). Die A
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Damm et al.Masaba DM, Waller JM (19
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114
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Weir et al.grass-inhabiting species
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Weir et al.Table 1. A list of strai
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Weir et al.Table 1. (Continued).Spe
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Weir et al.Table 1. (Continued).Spe
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Weir et al.Table 2. Primers used in
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Weir et al.11ICMP 17789 Malus USA1I
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Weir et al.Kahawae cladeC. alataeC.
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Weir et al.A0.991ICMP 17905 Coffea
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Weir et al.Conidial width variation
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Weir et al.G. c.“f.sp. camelliae
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Weir et al.Fig. 10. Colletotrichum
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Weir et al.Fig. 18. Glomerella cing
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Weir et al.images under C. fructico
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Weir et al.Specimen examined: Thail
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Page 190 and 191: Cannon et al.182
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