Colletotrichum: complex species or species ... - CBS - KNAW

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Weir et al.A0.991ICMP 17905 Coffea CameroonICMP 17915 Coffea AngolaICMP 17811 Coffea Malawi1ICMP 17816 C. kahawae Coffea KenyaC. kahawaesubsp. kahawae0.89ICMP 18534 Kunzea New Zealand0.951ICMP 17931 Dryas SwitzerlandICMP 17922 G. c. var. migrans Hypericum GermanyC. kahawaesubsp. ciggaro10.89ICMP 19122 G. rufomaculans var. vaccinii Vaccinium USAICMP 18539 C. kahawae subsp. ciggaro Olea Australia1ICMP 12952 Persea New Zealand0.620.9410.981ICMP 10643 Glomerella cingulata “f. sp. camelliae” Camellia UKICMP 18542 Camellia USAG. cingulata “f. sp. camelliae”ICMP 10646 Camellia USA1ICMP 18706 Vitis USAICMP 18658 C. gloeosporioides “f. sp.clidemia” Clidemia USAICMP 19120 C. psidii Psidium ItalyC. psidii0.99 ICMP 18548 Coprosma New Zealand0.99 ICMP 18537 C. aotearoa Coprosma New Zealand11 ICMP 18735 Hedychium New ZealandICMP 18740 Dysoxylum New Zealand0.98ICMP 18530 Vitex New Zealand0.56ICMP 18532 Vitex New ZealandICMP 17324 Kunzea New Zealand1ICMP 18533 Prumnopitys New ZealandC. clidemiaC. aotearoa1ICMP 18577 Coprosma New Zealand0.581ICMP 17326 Podocarpus New ZealandICMP 18535 Dacrycarpus New Zealand1ICMP 4832 C. ti Cordyline New ZealandICMP 5285 Cordyline New ZealandICMP 18579 C. cordylinicola Cordyline ThailandICMP 17821 C. gloeosporioides Citrus ItalyC. tiC. cordylinicola0.0040B0.3210.911C. kahawae subsp. ciggaroC. kahawae subsp. kahawaeG. c. “f. sp. camelliae”C. clidemia1C. ti0.39C. psidii10.17C. cordylinicolaC. aotearoaC. gloeosporioides0.2 0.18 0.16 0.14 0.12 0.10.08 0.06 0.04 0.020.0Fig. 5. A Bayesian inference phylogenetic tree of 30 selected isolates in the Kahawae clade of the Colletotrichum gloeosporioides species complex. The tree was build usingconcatenated sequences of the ACT, TUB2, CAL, CHS-1, GAPDH, GS, ITS, and SOD2 genes each with a separate model of DNA evolution. Other details as per Fig.1. B. Aspecies-tree constructed from the same data, the scale is a clock set relative to the last common ancestor of the Kahawae clade and C. gloeosporioides s. str., as calibratedin Fig. 3.ex-type or authentic cultures. The Musae clade thus includes C.fructicola, C. musae, C. nupharicola, C. siamense, and C. tropicale;and the Kahawae clade includes C. cordylinicola, C. psidii, and C.kahawae. Also belonging in the latter is Glomerella cingulata “f.sp. camelliae”. To provide a consistent taxonomic treatment of thesubclades resolved within the Musae and Kahawae clades, severalnew species and one new subspecies are proposed. In the Musaeclade these are C. aenigma, C. aeschynomenes, C. alienum,C. queenslandicum, and C. salsolae; in the Kahawae clade C.aotearoa, C. clidemiae, C. kahawae subsp. ciggaro, and C. ti. Theother accepted species, well resolved in all of the gene trees, are C.alatae, C. asianum, C. gloeosporioides, C. horii, C. theobromicola,and C. xanthorrhoeae.130
The Colletotrichum gloeosporioides species complexBC.queenslandicumC.tropicaleC.tiC.clidemiaeC.siamenseC.aotearoaC.siamenseC.tiC.aotearoaC.aotearoaC.alienumC.siamenseC.aenigmaC.salsolaeC.siamenseC.kahawaeC.alienumC.theobromicolaC.theobromicolaC.theobromicolaC.horiiC.aotearoa0.3C.fructicolaC.aeschynomenesC.fructicolaC.queenslandicumC. nupharicolaC.queenslandicumC.siamenseC.siamenseC.gloeosporioidesC.gloeosporioidesC.aotearoaC.nupharicolaC.kahawaeAC.aotearoaC.kahawaeC.aotearoaC.psidiiG. c. “f. sp. camelliae”C.cordylinicolaC.asianumC.musaeC.musaeC.alataeC.xanthorrhoeaeC.hippeastriC.boninense1bpFig. 6. An UPGMA tree of ITS sequences from 156 isolates in the Colletotrichum gloeosporioides species complex. Isolate names have been replaced with species presentin each clade. Species that are in monophyletic clades are emphasised in bold font to indicate those for which ITS barcoding is likely to work well. B: A 50 % majority-ruleconsensus Bayesian inference tree of the same data, showing the collapse of structure when analysed with a more robust method.www.studiesinmycology.org131
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Studies in Mycology 73 (September 2
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Colletotrichum: complex species or
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Damm et al.Table 1. Strains of Coll
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Damm et al.Table 1. (Continued).Gen
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Damm et al.Fig. 2. Colletotrichum a
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The Colletotrichum boninense specie
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available online at www.studiesinmy
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The Colletotrichum acutatum species
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Cannon et al.In rare instances, Col
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Cannon et al.Table 1. Summary of pr
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Cannon et al.Table 1. (Continued).P
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Cannon et al.Table 2. Colletotrichu
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Cannon et al.as did those for Colle
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Cannon et al.Table 3. Authentic seq
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Cannon et al.Table 3. (Continued).S
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Cannon et al.110.74 C. cuscutae IMI
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Cannon et al.C. lindemuthianum AB08
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Cannon et al.A further important ac
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Cannon et al.Hawksworth DL (2011).
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Cannon et al.Rodríguez-Guerra R, R
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Studies in MycologyStudies in Mycol
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CBS Biodiversity SeriesNo. 11:Taxon
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Studies in Mycology (ISSN 0166-0616
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