Colletotrichum: complex species or species ... - CBS - KNAW

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Damm et al.1 change991.00861.000.96981.000.980.98931.0072981.00791.00981.00CBS 515.78 Nymphaea NLCBS 516.78 Nuphar NLCBS 526.77 Nymphaea NLCBS 173.51 Mahonia ItalyCBS 129945 Olea PortugalCBS 231.49 Olea PortugalCBS 126507 Oenothera NLIMI 370491 Malus BrazilCBS 119294 Leucaena MexicoCBS 112992 Protea ZACBS 113002 Protea ZACBS 113003 Protea ZACBS 113004 Protea ZACBS 113005 Protea ZACBS 115408 Protea ZACBS 482.82 Protea AustraliaCBS 114188 Protea unknownCBS 158.27 unknown unknownCSL 455 Photinia UKIMI 379162 Capsicum ZimbabweIMI 360386 Pelargonium IndiaCBS 129926 litter ThailandCBS 126528 Capsicum IndonesiaCBS 126382 Anemone NLCBS 126383 Anemone NLCBS 126511 Anemone NLCBS 100064 Anemone NLCBS 130.80 Anemone ItalyCBS 129935 Anemone IsraelCBS 127612 Fragaria USACBS 361.79 Anemone NLCBS 126513 Anemone NLCBS 100065 Anemone NLCBS 129928 Fragaria USACBS 129929 Fragaria USACBS 112202 Fragaria SpainCBS 122110 Fragaria BulgariaCBS 122111 Fragaria BulgariaCBS 122121 Fragaria BulgariaIMI 345053 Fragaria FranceIMI 348497 Fragaria FranceCBS 126372 Fragaria ItalyIMI 360928 Fragaria SwitzerlandIMI 364856 Fragaria SpainCBS 125958 Fragaria NLCBS 125959 Fragaria NLCBS 125966 Fragaria NLCBS 125961 Fragaria NLCBS 130239 Fragaria NLIMI 391664 Fragaria IsraelCBS 129936 Fragaria IsraelCBS 129937 Fragaria IsraelCBS 129918 Fragaria unknownCBS 126366 Fragaria USACBS 126367 Fragaria USACBS 126370 Fragaria USAIMI 311743 Fragaria USAIMI 324995 Fragaria USACBS 127609 Fragaria USACBS 127610 Fragaria USACBS 129933 Fragaria USAIMI 348177 Fragaria USACBS 127608 Fragaria CanadaCBS 126504 Fragaria ZAIMI 301119 Fragaria KenyaIMI 299103 Fragaria UKCBS 125973 Fragaria UKCBS 126377 Fragaria NLIMI 348502 Fragaria FranceIMI 345032 Fragaria Italy99 CBS 126529 Capsicum Indonesia98 1.00CBS 126530 Capsicum IndonesiaC. scovilleiCBS 120708 Capsicum Thailand1.00 IMI 350839 Psidium IndiaC. guajavae100 CBS 126518 Carthamus NLCBS 126519 Chrysanthemum NL C. chrysanthemi1.00 IMI 364540 Chrysanthemum China90 CBS 853.73 Cosmos NLC. cosmi1.00 CBS 125472 Coffea VietnamC. walleriCBS 122122 Carica Australia0.99 CBS 294.67 Carica AustraliaCBS 295.67 Fragaria AustraliaIMI 345034 Fragaria AustraliaIMI 354381 Fragaria Australia C. simmondsii99 CBS 126524 Cyclamen NL1.00CBS 111531 Protea USA99 1.00 971.00 CBS 114494 Protea USAIMI 313840 Mangifera Australia97 1.0099 IMI 165753 Musa St. Lucia1.00 1.00 CBS 502.97 Musa West IndiesIMI 364297 Theobroma MalaysiaCBS 127551 Eucalyptus Indonesia99 CBS 112989 Hevea India1.00 CBS 129827 Hevea ColombiaCBS 292.67 Capsicum AustraliaC. nymphaeaeC. paxtoniiC. sloaneiC. indonesienseC. laticiphilumC. brisbanenseA2D2D4D3Clade 2Fig. 1. (Continued).to combine them. In the multigene analyses (gene boundaries ofITS: 1–546, GAPDH: 557–829, CHS-1: 840–1121, HIS3: 1131–1519, ACT: 1530–1786, TUB2: 1797–2290) of 330 isolates of C.acutatum and related Colletotrichum species including the outgroup(C. orchidophilum strains CBS 631.80, CBS 632.80, CBS 119291,IMI 309357), 2290 characters including the alignment gaps wereprocessed, of which 468 characters were parsimony-informative,65 parsimony-uninformative and 1757 constant. One strain thatwas revealed as not belonging to the C. acutatum species complex(CBS 436.77, C. pseudoacutatum) was not included in the analysispresented in Fig. 1. After a heuristic search using PAUP, 830 mostparsimonious trees were retained (length = 1008 steps, CI = 0.643,RI = 0.981, RC = 0.681, HI = 0.357) of which one is shown in Fig.1. The topology of the 830 trees was similar, which was verifiedfor a large selection of trees. They differed only in the position oftaxa within the subclades. For Bayesian analysis, a HKY+I modelwas selected for ITS, a HKY+G model for GAPDH and TUB2, aK80+I+G model for CHS-1, a HKY+I+G model for HIS3, a GTR+Gmodel for ACT, and incorporated in the analysis. The consensustree obtained from Bayesian analyses and the NJ tree (not shown)confirmed the tree topology obtained with parsimony. Bayesianposterior probability values agreed with bootstrap supports (Fig. 1).40
The Colletotrichum acutatum species complex991.001 change911001.000.971.0072CBS 128517 Fiorinia USACBS 129931 Malus USACBS 981.69 Coffea AngolaCBS 129932 Malus USACBS 112995 Malus USACBS 125396 Malus USACBS 127538 Malus USAIMI 324996 Malus USACBS 127611 Fragaria USACBS 786 86 Malus ItalyCBS 126523 Berberis NLCBS 129940 Grevillea GermanyCBS 129941 Grevillea GermanyCBS 124958 Pyrus USAATCC 12097 Rhododendron USACBS 293.67 Persea AustraliaIMI 363003 Camellia ChinaCBS 126508 Vaccinium NLCBS 126509 Vaccinium NLCBS 127537 Vaccinium USACBS 124962 Solanum USACBS 124963 Solanum USACBS 125956 Penstemon NLCBS 126526 Primula NLCBS 235.49 unknown unknownCSL 1295 Fragaria UKIMI 324991 Piper unknownCSL 473 Liriodendron UKCBS 129916 Vaccinium USACBS 129948 Tulipa UKCBS 200.35 Rubus USACBS 129938 Malus USACBS 126381 Malus NLCBS 127614 Fragaria USACBS 125970 Cyclamen ItalyCBS 167.86 Myriophyllum USACBS 129930 Malus NZCBS 128555 Malus NZCBS 127600 Persea AustraliaCBS 127601 Mangifera AustraliaCBS 119186 Vaccinium NZCBS 490.92 Solanum unknownIMI 345583 Fragaria NZIMI 345578 Fragaria NZCSL 318 Magnolia UKCBS 127599 Persea AustraliaCBS 119292 Vaccinium NZCBS 128529 Fragaria NZIMI 345575 Fragaria NZCBS 128498 Actinidia NZIMI 384569 Kalmia USACBS 129946 Olea PortugalCBS 129947 Vitis PortugalATCC 28992 Malus USACBS 119293 Vaccinium NZCBS 112996 Carica AustraliaCBS 113599 Grevillea AustraliaCBS 113600 Grevillea Australia87 CBS 111993 Grevillea AustraliaCBS 369.73 Lupinus NZ0.99 CBS 370.73 Pinus NZCBS 371.73 Pinus NZIMI 223120 Anemone AustraliaCBS 128499 Pyrus NZCBS 110735 Pinus ZACBS 112979 Pinus ZACBS 112980 Pinus ZACBS 112981 Pinus ZACBS 127534 Pinus ZACBS 127602 Fragaria AustraliaCBS 112990 Leucadendron ZACBS 112994 Leucospermum ZACBS 115202 Leucadendron ZACBS 127598 Olea ZACBS 115393 Mimetes ZACBS 126521 Anemone NLCBS 129919 Hoodia ZACBS 127539 Aspalathus ZACBS 127542 Aspalathus ZACBS 129921 Aspalathus ZACBS 129922 Aspalathus ZACBS 127543 Aspalathus ZACBS 127545 Aspalathus ZACBS 129914 Aspalathus ZACBS 129915 Aspalathus ZACBS 129925 Aspalathus ZACBS 126505 Lobelia NLCBS 126506 Phlox NLCSL 287 Statice UKIMI 336479 Pistacia AustraliaIMI 384175 Nerium NZCBS 129920 Hoodia ZACBS 127544 Hoodia ZACBS 127540 Aspalathus water ZACBS 129923 Aspalathus water ZACBS 129924 Aspalathus water ZACBS 127546 Aspalathus water ZACBS 127541 Aspalathus ZACBS 112759 Hakea ZACBS 112760 Hakea ZA96 CBS 112761 Hakea ZACBS 112993 Hakea ZA100 1.00 CBS 113007 Hakea ZA0.87 CBS 113008 Hakea ZA1.00 CBS 113009 Hakea ZAIMI 216370 Coffea TanzaniaIMI 319423 Coffea KenyaCBS 129952 Olea PortugalCBS 113006 Protea ZA94 CBS 979.69 Coffea Kenya1.00 CBS 144.29 Capsicum Sri LankaC. fioriniaeC. acutatumA3A5C1C2C3J4Clade 4 Clade 3Fig. 1. (Continued).The analyses resulted in detection of five main clades and29 subclades within C. acutatum s. lat., which we accept asrepresenting different Colletotrichum species. The correspondinggroups according to Sreenivasaprasad & Talhinhas (2005,numbers beginning with A) and Guerber et al. (2003, mtDNARFLP haplotypes, numbers beginning with C...K), which are themost differential and comparable studies, are listed in bracketsbelow and are indicated in the phylogenetic tree (Fig. 1). Thewww.studiesinmycology.org41
Page 1: Studies in Mycology 73 (September 2
Page 5 and 6: Colletotrichum: complex species or
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Page 12 and 13: Damm et al.Table 1. (Continued).Gen
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Damm et al.Table 2. (Continued).Spe
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Damm et al.Table 3. Appressoria mea
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Damm et al.Fig. 25. Colletotrichum
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Damm et al.to olivaceous grey, filt
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Damm et al.are formed directly from
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Damm et al.Arx JA von (1957). Die A
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Damm et al.Masaba DM, Waller JM (19
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114
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Weir et al.grass-inhabiting species
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Weir et al.Table 1. A list of strai
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Weir et al.Table 1. (Continued).Spe
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Weir et al.Table 1. (Continued).Spe
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Weir et al.Table 2. Primers used in
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Weir et al.11ICMP 17789 Malus USA1I
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Weir et al.Kahawae cladeC. alataeC.
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Weir et al.A0.991ICMP 17905 Coffea
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Weir et al.Conidial width variation
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Weir et al.G. c.“f.sp. camelliae
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Weir et al.Fig. 10. Colletotrichum
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Weir et al.Fig. 18. Glomerella cing
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Weir et al.images under C. fructico
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Weir et al.Specimen examined: Thail
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Weir et al.Notes: First described f
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Weir et al.gossypii var. cephalospo
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Weir et al.to utilise either citrat
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Weir et al.(ex-epitype culture CBS
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Weir et al.of this species to C. ps
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Weir et al.Table 4. Performance of
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Weir et al.Crous PW, Gams W, Stalpe
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Weir et al.Simmonds JH (1968). Type
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Cannon et al.182
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Cannon et al.In rare instances, Col
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Cannon et al.Table 1. Summary of pr
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Cannon et al.Table 1. (Continued).P
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Cannon et al.Table 2. Colletotrichu
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Cannon et al.as did those for Colle
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Cannon et al.Table 3. Authentic seq
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Cannon et al.Table 3. (Continued).S
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Cannon et al.110.74 C. cuscutae IMI
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Cannon et al.Boninense cladeThe bon
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Cannon et al.C. lindemuthianum AB08
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Cannon et al.A further important ac
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Cannon et al.Hawksworth DL (2011).
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Cannon et al.Rodríguez-Guerra R, R
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Studies in MycologyStudies in Mycol
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CBS Biodiversity SeriesNo. 11:Taxon
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Studies in Mycology (ISSN 0166-0616
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