Colletotrichum: complex species or species ... - CBS - KNAW

More documents

Recommendations

Info

Weir et al.Kahawae cladeC. alataeC. horiiC. tiC. aotearoaC. cordylinicolaC psidiiC. clidemiaG. cingulata “f.sp. camelliae”C. kahawae subsp. ciggaroC. kahawae subsp. kahawaeC. asianumC. theobromicolaC. fructicolaC. nupharicolaC. alienumC. aenigmaC. musaeC. aeschynomenesC. siamenseMusae cladeC. tropicaleC. queenslandicumC. salsolaeC. gloeosporioidesC. xanthorrhoeae0.0060Fig. 2. An unrooted Bayesian inference phylogenetic treeof ex-type and authentic cultures of the 24 taxa withinthe Colletotrichum gloeosporioides species complex,illustrating their relative genetic distances, as indicated bybranch lengths. There are two clusters within the speciescomplex, the ‘Musae clade’ and the ‘Kahawae clade’. Thetree was build using concatenated sequences of the ACT,TUB2, CAL, CHS-1, GAPDH, GS, ITS, and SOD2 geneseach with a separate model of DNA evolution.10.990.970.300.730.3010.450.910.410.37 0.470.370.570.9510.450.640.980.4710.530.46C. fructicolaC. nupharicolaC. alienumC. aeschynomenesC. siamenseC. aenigmaC. tropicaleC. musaeC. salsolaeC. queenslandicumC. asianumC. gloeosporioidesC. alataeG.c. “f. sp. camelliae”C. kahawaeC. clidemiaC. tiC. cordylinicolaC. psidiiC. aotearoaC. horiiC. xanthorrhoeaeC. theobromicolaC. boninenseC. hippeastri1.0 0.80.60.40.20.0Fig. 3. A Bayesian inference species-tree of the C. gloeosporioides species complex. The tree was built by grouping all 158 isolates into species and simultaneously estimatingthe individual five gene trees (ACT, CAL, CHS-1, GAPDH, and ITS) and the summary species tree using BEAST. The scale is an uncalibrated clock set relative to the lastcommon ancestor of the C. gloeosporioides and C. boninense species complexes.128
The Colletotrichum gloeosporioides species complexA1110.950.9710.99ICMP 18613 Limonium IsraelICMP 18727 Fragaria USAICMP 18581 C. fructicola Coffea ThailandICMP 18646 C. ignotum Tetragastris PanamaICMP 17921 Glomerella cingulata var. minor Ficus GermanyICMP 18645Theobroma PanamaICMP 18120 Dioscorea NigeriaC. fructicola110.69ICMP 17938 Nuphar USAICMP 18187 C. nupharicola Nuphar USAICMP 17940 Nuphar USAC. nupharicola0.991111ICMP 18621 Persea New ZealandICMP 12071 C. alienum Malus New ZealandICMP 18686 Pyrus JapanICMP 18691 Persea AustraliaICMP 18608 C. aenigma Persea IsraelC. alienumC. aenigma1ICMP 17817 Musa KenyaICMP 19119 C. musae Musa USAC. musae0.9410.82111ICMP 17795 Malus USAICMP 18642 C. hymenocallidis Hymenocallis ChinaICMP 18578 C. siamense Coffee ThailandICMP 19118 C. jasmini-sambac Jasminum VietnamICMP 18574 Pistacia AustraliaC. siamense10.871111111ICMP 12567 Persea AustraliaICMP 18121 Dioscoria NigeriaICMP 17673 C.g. “f. sp. aeschynomenes”Aeschynomene USAICMP 18672 Litchi JapanICMP 18653 C. tropicale Theobroma PanamaICMP 18705 Coffea FijiICMP 1778 C. gloeosporioides var. minus Carica AustraliaICMP 19051 C.g. “f. sp. salsolae” Salsola HungaryICMP 18696 Mangifera AustraliaICMP 18580 C. asianum Coffea ThailandICMP 17821 C. gloeosporioides Citrus ItalyC. aeschynomenesC. tropicaleC. queenslandicumC. salsolaeC. asianum0.0030B110.440.550.330.470.750.900.970.970.60C. fructicolaC. alienumC. nupharicolaC. aenigmaC. musaeC. aeschynomenesC. siamenseC. tropicaleC. salsolaeC. queenslandicumC. asianumC. gloeosporioides0.130.1170.1040.0910.0780.0650.0520.0390.0260.0130.0Fig. 4. A Bayesian inference phylogenetic tree of 32 selected isolates in the Musae clade of the Colletotrichum gloeosporioides species complex. The tree was build usingconcatenated sequences of the ACT, TUB2, CAL, CHS-1, GAPDH, GS, ITS, and SOD2 genes each with a separate model of DNA evolution. Other details as per Fig.1. B. Aspecies-tree constructed from the same data, the scale is an clock set relative to the last common ancestor of the Musae clade and C. gloeosporioides s. str., as calibrated inFig. 3.but DNA sequences from these isolates have been accessionedinto GenBank (ITS: JX009423–JX009428, GAPDH: JX009416–JX009422, ACT: JX009404–JX009407, CAL: JX009408–JX009411, CHS-1: JX009412–JX009415).Many of the species that we recognise fall into one of twoclades, the informally named Musae clade and Kahawae clade (Fig.2). Each clade contains several species that are phylogeneticallywell supported in multi-gene analyses, but within the clades branchlengths are short because of the small number of phylogeneticallyinformative characters. This is reflected in the low support values inthe gene tree analyses for the species we accept within that clade(Figs 3, 4). Both the Musae and Kahawae clades contain ex-typeor authentic cultures from several long accepted species. In thiswork we have made a pragmatic decision to minimise taxonomicdisruption, so that monophyletic subclades within the Kahawaeand Musae clades are accepted as species where they includewww.studiesinmycology.org129
Page 1:
Studies in Mycology 73 (September 2
Page 5 and 6:
Colletotrichum: complex species or
Page 10 and 11:
Damm et al.Table 1. Strains of Coll
Page 12 and 13:
Damm et al.Table 1. (Continued).Gen
Page 14 and 15:
Damm et al.combined sequence datase
Page 16 and 17:
Damm et al.Fig. 2. Colletotrichum a
Page 19 and 20:
The Colletotrichum boninense specie
Page 21 and 22:
Page 23 and 24:
Page 25 and 26:
Page 27 and 28:
Page 29 and 30:
Page 31 and 32:
Page 33 and 34:
Page 35 and 36:
Page 37 and 38:
Page 39 and 40:
Page 41 and 42:
Page 43 and 44:
Page 45 and 46:
available online at www.studiesinmy
Page 47 and 48:
The Colletotrichum acutatum species
Page 49 and 50:
Page 51 and 52:
Page 53 and 54:
Page 55 and 56:
Page 57 and 58:
Page 59 and 60:
Page 61 and 62:
Page 63 and 64:
Page 65 and 66:
Page 67 and 68:
Page 69 and 70:
Page 71 and 72:
Page 73 and 74:
Page 75 and 76:
Page 77 and 78:
Page 79 and 80:
Page 81 and 82:
Page 83 and 84:
Page 85 and 86: The Colletotrichum acutatum species
Page 91: The Colletotrichum acutatum species
Page 94 and 95: Damm et al.µm diam. Setae not obse
Page 96 and 97: Damm et al.Table 2. Conidia measure
Page 98 and 99: Damm et al.Table 2. (Continued).Spe
Page 100 and 101: Damm et al.Table 3. Appressoria mea
Page 102 and 103: Damm et al.Fig. 25. Colletotrichum
Page 114 and 115: Damm et al.to olivaceous grey, filt
Page 116 and 117: Damm et al.are formed directly from
Page 118 and 119: Damm et al.Arx JA von (1957). Die A
Page 120 and 121: Damm et al.Masaba DM, Waller JM (19
Page 122 and 123: 114
Page 124 and 125: Weir et al.grass-inhabiting species
Page 126 and 127: Weir et al.Table 1. A list of strai
Page 128 and 129: Weir et al.Table 1. (Continued).Spe
Page 130 and 131: Weir et al.Table 1. (Continued).Spe
Page 132 and 133: Weir et al.Table 2. Primers used in
Page 134 and 135: Weir et al.11ICMP 17789 Malus USA1I
Page 138 and 139: Weir et al.A0.991ICMP 17905 Coffea
Page 140 and 141: Weir et al.Conidial width variation
Page 142 and 143: Weir et al.G. c.“f.sp. camelliae
Page 144 and 145: Weir et al.Fig. 10. Colletotrichum
Page 154 and 155: Weir et al.Fig. 18. Glomerella cing
Page 156 and 157: Weir et al.images under C. fructico
Page 158 and 159: Weir et al.Specimen examined: Thail
Page 162 and 163: Weir et al.Notes: First described f
Page 164 and 165: Weir et al.gossypii var. cephalospo
Page 166 and 167: Weir et al.to utilise either citrat
Page 170 and 171: Weir et al.(ex-epitype culture CBS
Page 172 and 173: Weir et al.of this species to C. ps
Page 184 and 185: Weir et al.Table 4. Performance of
Page 186 and 187:
Weir et al.Crous PW, Gams W, Stalpe
Page 188 and 189:
Weir et al.Simmonds JH (1968). Type
Page 190 and 191:
Cannon et al.182
Page 192 and 193:
Cannon et al.In rare instances, Col
Page 194 and 195:
Cannon et al.Table 1. Summary of pr
Page 196 and 197:
Cannon et al.Table 1. (Continued).P
Page 198 and 199:
Cannon et al.Table 2. Colletotrichu
Page 200 and 201:
Cannon et al.as did those for Colle
Page 202 and 203:
Cannon et al.Table 3. Authentic seq
Page 204 and 205:
Cannon et al.Table 3. (Continued).S
Page 206 and 207:
Page 208 and 209:
Page 210 and 211:
Cannon et al.110.74 C. cuscutae IMI
Page 212 and 213:
Cannon et al.Boninense cladeThe bon
Page 214 and 215:
Cannon et al.C. lindemuthianum AB08
Page 216 and 217:
Cannon et al.A further important ac
Page 218 and 219:
Cannon et al.Hawksworth DL (2011).
Page 220 and 221:
Cannon et al.Rodríguez-Guerra R, R
Page 223 and 224:
Studies in MycologyStudies in Mycol
Page 225 and 226:
CBS Biodiversity SeriesNo. 11:Taxon
Page 227:
Studies in Mycology (ISSN 0166-0616
show all

Colletotrichum: complex species or species ... - CBS - KNAW

You also want an ePaper? Increase the reach of your titles

Delete template?

Save as template?