Colletotrichum: complex species or species ... - CBS - KNAW

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Cannon et al.Table 1. Summary of principal phylogenetic research papers on Colletotrichum species based on DNA sequence data.Publication Clade Host taxa Geographical limits Loci usedMills et al. (1992) genus-wide Tropical fruits ITSSreenivasaprasad et al. (1992) acutatum, gloeosporioides Strawberry ITSSreenivasaprasad et al. (1993) gloeosporioides Coffee ITSSherriff et al. (1994) genus-wide ITS-2, LSUSherriff et al. (1995) graminicola Poaceae LSUBailey et al. (1996) orbiculare Malvaceae ITS, LSUSreenivasaprasad et al. (1996) genus-wide ITSJohnston & Jones (1997) genus-wide Fruit crops New Zealand LSUMunaut et al. (1998) gloeosporioides Stylosanthes Africa, Australia ITSBalardin et al. (1999) orbiculare Phaseolus ITSMartin & García-Figueres (1999) acutatum, gloeosporioides Olive Spain ITSFreeman et al. (2000) acutatum, gloeosporioides Almond, avocado, strawberry Israel, USA ITS, LSUFreeman et al. (2001) acutatum Mostly fruit crops ITSHsiang & Goodwin (2001) graminicola Poaceae ITSAbang et al. (2002) gloeosporioides Yam Nigeria ITSChen et al. (2002) graminicola Agrostis Canada MAT2Moriwaki et al. (2002) genus-wide Japan ITS-2, LSUMunaut et al. (2002) gloeosporioides Stylosanthes Mexico ITSNirenberg et al. (2002) acutatum Lupin ITSTalhinhas et al. (2002) acutatum Lupin ITS, TUB2, HIS4Vinnere et al. (2002) acutatum Rhododendron Sweden, Latvia ITS, TUB2, mtSSUAfanador-Kafuri et al. (2003) acutatum, gloeosporioides Mango, passion-fruit, tamarillo Colombia ITSDenoyes-Rothan et al. (2003) acutatum, gloeosporioides Strawberry ITSGuerber et al. (2003) acutatum USA, New Zealand GAPDH, GSMartínez-Culebras et al. (2003) acutatum, gloeosporioides Strawberry ITSMoriwaki et al. (2003) boninense Japan ITSSanders & Korsten (2003) gloeosporioides Avocado, mango South Africa ITSFord et al. (2004) destructivum Legumes ITSLu et al. (2004) boninense, gloeosporioides Endophytes of tropical trees Guyana ITSLubbe et al. (2004) Genus-wide Proteaceae primarily Africa ITS, TUB2O’Connell et al. (2004) destructivum ITSDu et al. (2005) acutatum, graminicola, gloeosporioides ITS, MAT1-2 (HMG marker)Lee et al. (2005) boninense Euonymus japonicus Korea ITSLotter & Berger (2005) acutatum Lupin South Africa ITS, TUB1, TUB2Photita et al. (2005) genus-wide Thailand ITSTalhinhas et al. (2005) acutatum, gloeosporioides Olive Portugal ITS, TUB2Chung et al. (2006) acutatum, gloeosporioides Fruit crops Japan ITSCrouch et al. (2006) graminicola Poaceae USA ITS, MAT1-2 (HMG marker),SOD2Farr et al. (2006) genus-wide Agavaceae ITS, LSUGonzález et al. (2006) acutatum, gloeosporioides Apple USA, Brazil GAPDHRamos et al. (2006) acutatum, gloeosporioides Citrus Portugal ITS, TUB2Latunde-Dada & Lucas (2007) destructivum, truncatum, graminicola ITS, LSULee at al. (2007) acutatum, gloeosporioides Apple Korea ITS, TUB2Liu et al. (2007a) orbiculare GAPDH, GSLiu et al. (2007b) dracaenophilum Buxus China ITSShenoy et al. (2007) truncatum Solanaceae ITS, TUB2Whitelaw-Weckert et al. (2007) acutatum Grape Australia ITS, TUB2Cannon et al. (2008) gloeosporioides ITS186
Colletotrichum – current status and future directionsTable 1. (Continued).Publication Clade Host taxa Geographical limits Loci usedCrouch et al. (2008) graminicola Poaceae Ccret2LoBuglio & Pfister (2008) acutatum Acer platanoides USA ITS, LSUMarcelino et al. (2008) acutatum Insects USA ITS, LSU, TUB2, GAPDH,GS, MAT1-2Peres et al. (2008) acutatum Citrus N and S America ITS, GAPDHThan et al. (2008a) acutatum, truncatum, gloeosporioides ITS, TUB2Than et al. (2008b) acutatum ITS, TUB2Crouch et al. (2009c) graminicola Poaceae ITS, APN2/IGS/MAT1-2,SOD2Crouch et al. (2009d) graminicola Poaceae ITS, APN2/IGS/MAT1-2,SOD2Damm et al. (2009) dematium, spaethianum, truncatum ITS, ACT, GAPDH, CHS-1,TUB2, HIS3Garrido et al. (2009) acutatum Strawberry Spain ITSMacKenzie et al. (2009) acutatum USA, Costa Rica ITS, GAPDH, GSMcKay et al. (2009) acutatum, boninense, gloeosporioides Almond Australia ITSMoriwaki & Tsukiboshi (2009) graminicola Echinochloa Japan ITS, MAT1-2 (HMG marker),SOD2Pileggi et al. (2009) boninense, gloeosporioides Maytenus ilicifolia Brazil ITSPolashock et al. (2009) acutatum, gloeosporioides Cranberry N America ITS, LSUPrihastuti et al. (2009) gloeosporioides Coffee Thailand ITS, ACT, TUB2, CAL, GS,GAPDHShivas & Tan (2009) acutatum ITS, TUB2Sun & Zhang (2009) destructivum ITSTalhinhas et al. (2009) acutatum, gloeosporioides Olive Portugal ITS, TUB2Yang et al. (2009) genus-wide Amaryllidaceae China, Thailand ITS, ACT, TUB2, CAL, CHS-1, GAPDHGiaretta et al. (2010) acutatum, gloeosporioides Apple Brazil ITSHemelrijk et al. (2010) acutatum Strawberry Belgium ITSLopez & Lucas (2010) gloeosporioides Cashew Brazil LSUManuel et al. (2010) gloeosporioides Coffee Angola ITSNguyen et al. (2010) genus-wide Coffee Vietnam ITS, mtSSUPhoulivong et al. (2010) gloeosporioides Tropical fruits Laos, Thailand ITS, TUB1, TUB2, ACT,GAPDHPhuong et al. (2010) genus-wide Coffee Vietnam ITS, mtSSUPrihastuti et al. (2010) graminicola Poaceae ITS, APN2/IGS/MAT1Rojas et al. (2010) gloeosporioides Cacao S America, China ITS, EF1α, TUB2, RPB1,APN2, MAT1-2Weir & Johnston (2010) gloeosporioides Persimmon ITS, GAPDH, EF1αWikee et al. 2010 gloeosporioides, truncatum Jasmine Vietnam ITS, ACT, TUB2, CAL, GS,GAPDHXie et al. (2010) acutatum, gloeosporioides Strawberry China ITSChoi et al. (2011) destructivum Korea ITS, ACT, EF1α, GSFaedda et al. (2011) acutatum Olive Italy ITS, TUB2Gazis et al. (2011) gloeosporioides Hevea species Peru ITS, TEF, GPDLiu et al. (2011) coccodes Potato ITS, ACT, GAPDH, TUB2Rampersad (2011) gloeosporioides, truncatum Papaya Trinidad ITS, TUB2Silva-Rojas & Ávila-Quezada (2011) acutatum, boninense, gloeosporioides Avocado Mexico ITS, LSUYang et al. (2011) genus-wide Orchidaceae China ITS, ACT, TUB2, CAL, CHS-1, GAPDHCrouch & Tomaso-Peterson (2012) graminicola Centipedegrass, sorghum ITS, APN2/IGS/MAT1-2,SOD2www.studiesinmycology.org187
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Studies in Mycology 73 (September 2
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Damm et al.Table 1. Strains of Coll
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The Colletotrichum boninense specie
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available online at www.studiesinmy
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The Colletotrichum acutatum species
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Damm et al.to olivaceous grey, filt
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Damm et al.Arx JA von (1957). Die A
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Weir et al.11ICMP 17789 Malus USA1I
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Weir et al.Kahawae cladeC. alataeC.
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Weir et al.A0.991ICMP 17905 Coffea
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Weir et al.G. c.“f.sp. camelliae
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Page 188 and 189: Weir et al.Simmonds JH (1968). Type
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Page 192 and 193: Cannon et al.In rare instances, Col
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