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VAAM-Jahrestagung 2012 18.–21. März in Tübingen

VAAM-Jahrestagung 2012 18.–21. März in Tübingen

VAAM-Jahrestagung 2012 18.–21. März in Tübingen

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142bacteria <strong>in</strong> situ, we used 16S rRNA clone libraries, 454-tag sequenc<strong>in</strong>g andCARD-FISH. S 0 slabs <strong>in</strong>cubated <strong>in</strong> oxic sediment were ma<strong>in</strong>ly colonizedby epsilonproteobacteria that were related to Sulfurimonas andSulfurovum. Sulfate formation supported that epsilonproteobacteria areimportant ZVS-oxidiz<strong>in</strong>g organisms not only <strong>in</strong> hydrothermal systems and<strong>in</strong> OMZs but also <strong>in</strong> temperate mar<strong>in</strong>e sediments. S 0 slabs from the anoxicsediment were colonized ma<strong>in</strong>ly by probably S-disproportionat<strong>in</strong>gDesulfocapsa. We will compare the diversity of S 0 -utiliz<strong>in</strong>g organismsfrom coastal sediments and from hydrothermal systems to look fordifferences and commonalities. Our data will provide detailed <strong>in</strong>sights <strong>in</strong>tothe bacterial community <strong>in</strong>volved <strong>in</strong> biogeochemical cycl<strong>in</strong>g of zerovalence sulfur species <strong>in</strong> different habitats.OTP019Synthetic microbial production pathways for benzoyl-CoAderivedmetabolitesJ. Mock*, J. HeiderUniversität Marburg, Mikrobiologie, Marburg, GermanyBenzoyl-CoA is a key <strong>in</strong>termediate <strong>in</strong> several metabolic pathways. For<strong>in</strong>stance it is a precursor for polyketide synthesis <strong>in</strong> plants andmicroorganisms or an <strong>in</strong>termediate <strong>in</strong> aromatic hydrocarbon degradation.S<strong>in</strong>ce benzoyl-CoA normally does not occur <strong>in</strong> microbial metabolism, anydesigned benzoyl-CoA-dependent microbial pathway requires an <strong>in</strong>itiationmodule to synthesise this <strong>in</strong>termediate. We made use of a benzoatetransporter and a benzoate-CoA ligase from the betaproteobacteriumAromatoleum aromaticum, which are <strong>in</strong>volved <strong>in</strong> anaerobic benzoatedegradation, to create recomb<strong>in</strong>ant benzoyl-CoA-produc<strong>in</strong>g bacterialstra<strong>in</strong>s.Our first efforts to couple benzoyl-CoA to the synthesis of a product aimedat the polyketide biphenyl, which is synthesised from benzoyl-CoA andthree malonyl-CoA by biphenyl synthase of the rowan berry Sorbusaucuparia 1 . The <strong>in</strong>itial host stra<strong>in</strong> of E.coli did not produce any detectableproducts, probably because of limited malonyl-CoA supply. Therefore, weshifted to the related Shimwellia (formerly Escherichia) blattae, s<strong>in</strong>ce thisspecies can be grown on malonate 2 , which should release the metabolicbottleneck. First results <strong>in</strong>dicate that a metabolite is <strong>in</strong>deed produced byrecomb<strong>in</strong>ant cultures fed with benzoate and malonate, which will befurther characterized.Another more extended possible biosynthetic pathway start<strong>in</strong>g frombenzoyl-CoA is pursued for the production of (R)-benzylsucc<strong>in</strong>ate, anaromatic compound of potential <strong>in</strong>terest for production of biodegradablepolymers. (R)-benzylsucc<strong>in</strong>ate is an <strong>in</strong>termediate of anaerobic toluenedegradation and is usually synthesised from toluene and fumarate via aglycyl radical enzyme 3 . We will try to establish a synthetic pathway forthis compound from benzoyl-CoA and the mixed acid-fermentationproduct succ<strong>in</strong>ate by revers<strong>in</strong>g the -oxidation pathway <strong>in</strong>volved <strong>in</strong>benzylsucc<strong>in</strong>ate degradation. The first step of this reverse pathway is thecondensation of benzoyl-CoA and succ<strong>in</strong>yl-CoA to benzoylsucc<strong>in</strong>yl-CoAby a new type of thiolase. First results on establish<strong>in</strong>g this reaction will beshown.1 Liu B, Raeth T, Beuerle T, Beerhues L. (2007). Biphenyl synthase, a novel type III polyketidesynthase. Planta. 225, 1495-503.2 Priest F G, Barker M. (2010). Gram-negative bacteria associated with brewery yeasts:reclassification of Obesumbacterium proteus biogroup 2 as Shimwellia pseudoproteus gen. nov., sp.nov., and transfer of Escherichia blattae to Shimwellia blattae comb. nov.Int Journal Systematic andEvol Microbiology.60,828-8333 Leutwe<strong>in</strong> C, Heider J. (2002). (R)-Benzylsucc<strong>in</strong>yl-CoA dehydrogenase of Thauera aromatica, anenzyme of the anaerobic toluene catabolic pathway.Arch Microbiol.178, 517-524,OTP020Influence of the <strong>in</strong>itial dissolved H 2 concentration on the reductivedechlor<strong>in</strong>ation of 1,2,3-trichlorobenzene by Dehalococcoides sp.stra<strong>in</strong> CBDB1S. Hartwig* 1 , G. Sawers 2 , U. Lechner 11 Mart<strong>in</strong>-Luther-University Halle, Biology/Microbiology AG Lechner,Halle (Saale), Germany2 Mart<strong>in</strong>-Luther-University Halle, Biology/Microbiology AG Sawers, Halle(Saale), GermanyThe genus Dehalococcoides comprises strictly anaerobic bacteria thatconserve energy exclusively by organohalide respiration. They only usehalogenated organic compounds such as 1,2,3-trichlorobenzene (TCB) aselectron acceptor and hydrogen as electron donor. Moreover, they only useacetate as a carbon source. The genome of Dehalococcoides sp. stra<strong>in</strong>CBDB1 encodes 32 homologous cobalt-dependent reductivedehalogenases (Rdh), 5 types of multi-subunit hydrogenases (Hyd) and aputative formate dehydrogenase (Fdh) as one of the most abundantprote<strong>in</strong>s <strong>in</strong> stra<strong>in</strong> CBDB1 [1].The <strong>in</strong>fluence of vary<strong>in</strong>g the dissolved H 2 concentration on thestoichiometric dechlor<strong>in</strong>ation of 1,2,3-TCB to 1,3-dichlorobenzene (DCB)was monitored <strong>in</strong> Dehalococcoides sp. stra<strong>in</strong> CBDB1 us<strong>in</strong>g gaschromatography. Initial dissolved H 2 concentrations from 1 M to 10 Mwere applied to cultures conta<strong>in</strong><strong>in</strong>g 50 M 1,2,3-TCB. The completedechlor<strong>in</strong>ation of50 M 1,2,3-TCB was achieved with<strong>in</strong> 48 hours us<strong>in</strong>g an <strong>in</strong>itial H 2concentration of 10 M. We could demonstrate that the rate of reductivedechlor<strong>in</strong>ation of 1,2,3-TCB to 1,3-DCB <strong>in</strong>creased with <strong>in</strong>creas<strong>in</strong>g <strong>in</strong>itialdissolved H 2 concentrations. Moreover, the hydrogen uptake rate also<strong>in</strong>creased with <strong>in</strong>creas<strong>in</strong>g dissolved H 2 concentrations. Hydrogenconsumption was also observed at an elevated redox potential (between -350 and -110 mV), whereas under these conditions reductivedechlor<strong>in</strong>ation did not occur. This <strong>in</strong>dicates that hydrogen oxidation andreductive dechlor<strong>in</strong>ation can be uncoupled. Us<strong>in</strong>g qRT-PCR it could bedemonstrated that the genes encod<strong>in</strong>g the catalytic subunits of the Fdh andthe periplasmatic hydrogenase Hup were highly expressed. Expression ofthese genes was also <strong>in</strong>fluenced <strong>in</strong> response to different <strong>in</strong>itial dissolved H 2concentrations.Acknowledgement: This work is supported by the DFG (research unit FOR1530)[1] Kube et al. (2005) Genome sequence of the chlor<strong>in</strong>ated compound-respir<strong>in</strong>g bacteriumDehalococcoides species stra<strong>in</strong> CBDB1. Nat Biotechnol 23, p.1269-1273OTP021Heterologues Regulation of Reductive Dehalogenase GeneExpression by a MarR-type RegulatorL. Segler* 1 , G. Sawers 2 , U. Lechner 11 Mart<strong>in</strong>-Luther-University Halle, Biology/Microbiology AG Lechner,Halle (Saale), Germany2 Mart<strong>in</strong>-Luther-University Halle, Biology/Microbiology AG Sawers, Halle(Saale), GermanyThe anaerobic bacterium Dehalococcoides sp. CBDB1 belongs to thephylum Chloroflexi and is unusual <strong>in</strong> that it is able to dechlor<strong>in</strong>atedifferent chloroaromatic compounds such as 1,2,3-trichlorbenzene (TCB)and 2,3,7,8-tetrachlorodibenzo-p-diox<strong>in</strong> (TCDD). Dechlor<strong>in</strong>ation takesplace <strong>in</strong> a process called organohalide respiration and is catalysed byreductive dehalogenases (Rdh) and driven by hydrogen as electron donor.The genome of stra<strong>in</strong> CBDB1 conta<strong>in</strong>s 32 genes encod<strong>in</strong>g putative Rdhs[1]. The Rdh enzymes consist of a catalytic subunit RdhA together with aputative membrane-anchor subunit RdhB and these are encoded by rdhABoperons. The rdhAB operons are closely associated with genes encod<strong>in</strong>geither MarR-type or two-component system (TCS) transcriptionalregulators. The role of these regulators <strong>in</strong> the transcriptional control of therespective rdhAB genes is unclear.Because Dehalococcoides bacteria are not genetically tractable and aredifficult to work with, a heterologous system to study the function of theMarR prote<strong>in</strong> CbdbA1625 <strong>in</strong> controll<strong>in</strong>g expression of the rdhA genecbdbA1624 was developed. A heterologous <strong>in</strong> vivo system <strong>in</strong> Escherichiacoli was established us<strong>in</strong>g a s<strong>in</strong>gle-copy reporter-lacZ fusion compris<strong>in</strong>gthe <strong>in</strong>tergenic region (IR) between cbdbA1624 and the divergentlytranscribed cbdbA1625, encod<strong>in</strong>g a MarR-type regulator. We analysed theactivity of the promoter of cbdbA1624 and that of cbdbA1625. Bothpromoters were functional <strong>in</strong> E. coli MC4100. The effect of multicopycbdbA1625 on expression of both reporter-lacZ fusions was analysed. TheMarR-type regulator had a negative effect on expression of bothpromoters. This work demonstrates that heterologous expression systemsprovide a powerful approach to dissect the transcriptional regulation of rdhgene expression.Acknowledgement: This work is supported by the DFG (research unit FOR1530)[1] Kube et al.(2005) Genome sequence of the chlor<strong>in</strong>ated compound-respir<strong>in</strong>g bacteriumDehalococcoides species stra<strong>in</strong> CBDB1. Nat Biotechnol 23, p.1269-1273.OTP0224-Sulfoacetophenone Baeyer-Villiger-type Monooxygenase and 4-Sulfophenylacetate Esterase <strong>in</strong> Comamonas testosteroni KF-1M. Weiss* 1 , K. Denger 1 , T. Huhn 2 , D. Schleheck 11 Microbial Ecology, Department of Biological Sciences, Konstanz, Germany2 Organic Chemistry, Department of Chemistry, Konstanz, GermanyThe xenobiotic laundry surfactant L<strong>in</strong>ear Alkylbenzene Sulfonate (LAS)(3 x 10 6 tons per year worldwide, [1]) is completely degraded byheterotrophic bacterial communities [2]. However, until now, no<strong>in</strong>formation on the enzymes and genes <strong>in</strong>volved has been established.3-(4-Sulfophenyl)butyrate (3-C4-SPC) is a biodegradation <strong>in</strong>termediate ofLAS, and 3-C4-SPC is m<strong>in</strong>eralized by Comamonas testosteroni KF-1 [3,4] through a pathway that <strong>in</strong>volves 4-sulfoacetophenone (SAP) and an<strong>in</strong>ducible Baeyer-Villiger-type monooxygenase (BVMO) to yield 4-sulfophenylacetate (SPAc) from SAP. The hydrolysis of SPAc to 4-sulfophenol (SP) and acetate is catalysed by an esterase. This SPAcesterasewas purified to homogeneity and the correspond<strong>in</strong>g gene <strong>in</strong> C.testosteroni KF-1 identified by peptide-mass f<strong>in</strong>gerpr<strong>in</strong>t<strong>in</strong>g. A predictedBVMO gene was located directly upstream to the SPAc-esterase gene.This candidate gene was over expressed <strong>in</strong> Escherichia coli and purified.The recomb<strong>in</strong>ant enzyme catalyzed the NADPH-dependent oxygenation ofSAP to SPAc, which was hydrolyzed after the addition of purified SPAcesterase,yield<strong>in</strong>g SP and acetate. Thus, the first two genes and enzymes<strong>in</strong>volved <strong>in</strong> the complete degradation pathway for LAS have beenidentified and characterized.References:[1], Knepper, T. P., D. Barceló, and P. de Voogt (eds.)., 2003. Elsevier, Amsterdam, chapter 1.BIOspektrum | Tagungsband <strong>2012</strong>

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