20.07.2015 Views

VAAM-Jahrestagung 2012 18.–21. März in Tübingen

VAAM-Jahrestagung 2012 18.–21. März in Tübingen

VAAM-Jahrestagung 2012 18.–21. März in Tübingen

SHOW MORE
SHOW LESS

You also want an ePaper? Increase the reach of your titles

YUMPU automatically turns print PDFs into web optimized ePapers that Google loves.

99comprises several structurally conserved velvet-like prote<strong>in</strong>s that havedist<strong>in</strong>ct developmental roles, illustrat<strong>in</strong>g the functional plasticity of theseregulators. We performed extensive phenotypic characterizations of s<strong>in</strong>gleand double knockout mutants us<strong>in</strong>g the codon-optimized FLP/FRTrecomb<strong>in</strong>ation system [5]. Data from penicill<strong>in</strong> bioassays andquantification of conidiospores of these knockout mutants clearly showthat all velvet-like prote<strong>in</strong>s are <strong>in</strong>volved <strong>in</strong> secondary metabolism andother dist<strong>in</strong>ct developmental processes. By detailed fluorescencemicroscopy and prote<strong>in</strong>-prote<strong>in</strong> <strong>in</strong>teraction studies us<strong>in</strong>g bimolecularfluorescence complementation, tandem-aff<strong>in</strong>ity purification and yeast twohybrid,we want to extend the analysis of the velvet-like complex <strong>in</strong> P.chrysogenum. Our results widen the current picture of regulatory networkscontroll<strong>in</strong>g both fungal secondary metabolism and morphogenesis, whichis significant for the genetic manipulation of fungal metabolism as part of<strong>in</strong>dustrial stra<strong>in</strong> improvement programs.[1] Bayram et al. (2008) Science 13:1504-1506[2] Calvo AM (2008) Fungal Genet Biol 45: 1053-1061[3] Hoff B, Kamerewerd J, Sigl C, Mitterbauer R, Zadra I, Kürnste<strong>in</strong>er H, Kück U (2010) Eukaryot Cell:9:1236-50[4] Hoff B, Kamerewerd J, Sigl C, Zadra I, Kück U (2010) Appl Microbiol Biotechnol 85: 1081-1094[5] Kopke K, Hoff B, Kück U (2010) Appl Environ Microbiol 76:4664-4674MEP030Phenguignardic acid and guignardic acid, phytotoxicsecondary metabolites from the grape black rot fungusGuignardia bidwelliiI. Buckel* 1 , D. Molitor 2 , J. Liermann 3 , B. Berkelmann-Löhnertz 4 , T. Opatz 3 ,E. Th<strong>in</strong>es 11 Institute of Biotechnology and Drug Research (IBWF), Plant protection,Kaiserslautern, Germany2 Centre de Recherche Public – Gabriel Lippmann, Department Environmentand Agro-Biotechnologies, Belvaux, Luxembourg3 Johannes-Gutenberg-University, Institute of Organic Chemistry, Ma<strong>in</strong>z,Germany4 Geisenheim Research Center, Department of Phytomedic<strong>in</strong>e, Geisenheim,GermanyThe causal agent of black rot on grapes is the phytopathogenicfungusGuignardia bidwellii. Black rot is one of the most devastat<strong>in</strong>gdiseases on grapes and s<strong>in</strong>ce 2002 a serve outbreak of the disease wasevident <strong>in</strong> some German w<strong>in</strong>egrow<strong>in</strong>g regions. The <strong>in</strong>fection was observed<strong>in</strong> abandoned v<strong>in</strong>eyards primarily, but subsequently an expansion tocultivated v<strong>in</strong>eyards was found. The disease can result <strong>in</strong> significant croplosses rang<strong>in</strong>g from 5 to 80 % of the total yield.The <strong>in</strong>fection cycle ofGuignardia bidwelliiis characterized by two phases,a symptomless <strong>in</strong>itial phase followed by a necrotrophic phase. Thus thefungus is classified as a hemibiotrophic pathogen. Phytopathogenic fungioften produce phytotox<strong>in</strong>s for a successful colonisation of the plant. Suchlow-molecular compounds are frequently <strong>in</strong>volved <strong>in</strong> disease symptomformation.Bioactivity guided isolation led to the identification of phenguignardicacid, a new secondary metabolite from submerged cultures of the grapeblack rot fungus as phytotoxic agent. The compound is structurally relatedto guignardic acid, a dioxolanone moiety conta<strong>in</strong><strong>in</strong>g metabolite isolatedpreviously fromGuignardiaspecies. However, <strong>in</strong> contrast to guignardicacid, which is presumably synthesised via deam<strong>in</strong>ation products of val<strong>in</strong>eand phenylalan<strong>in</strong>e, the biochemical precursors for the biosynthesis of thenew phytotox<strong>in</strong> appears to be exclusively phenylalan<strong>in</strong>e.Both compounds were characterised <strong>in</strong> biological assays by us<strong>in</strong>g v<strong>in</strong>e leafsegments or <strong>in</strong>tact plants. Dur<strong>in</strong>g fermentation optimisation sevenstructurally related secondary metabolites were detected and isolated. Fourof the seven secondary metabolites were found to be phytotoxic on v<strong>in</strong>eleaf segments.MEP031The genetic potential of Streptomyces coll<strong>in</strong>us Tü 365 tosynthesize secondary metabolitesS. Rohrer* 1 , D. Iftime 1 , C. Rückert 2 , J. Kal<strong>in</strong>owski 2 , W. Wohlleben 3 , T. Weber 11 Interfakultäres Institut für Mikrobiologie und Infektionsmediz<strong>in</strong> / UniversitätTüb<strong>in</strong>gen, Mikrobiologie/Biotechnologie - Secondary Metabolite Genomics,Tüb<strong>in</strong>gen, Germany2 CeBiTec / Universität Bielefeld, Bielefeld, Germany3 Interfakultäres Institut für Mikrobiologie und Infektionsmediz<strong>in</strong> / UniversitätTüb<strong>in</strong>gen, Mikrobiologie/Biotechnologie, Tüb<strong>in</strong>gen, GermanyStreptomycetes are common producers of secondary metabolites likeantibiotics. The stra<strong>in</strong> Streptomyces coll<strong>in</strong>us Tü 365 is known to producethe antibiotic Kirromyc<strong>in</strong> (Wolf and Zähner, 1972; Weber et al., 2008). Bybio<strong>in</strong>formatic analysis us<strong>in</strong>g the antiSMASH software (a secondarymetabolite prediction tool, Medema et al., 2011) 26 additional secondarymetabolite gene clusters were identified <strong>in</strong> the genome of this stra<strong>in</strong>, buttheir function and their biosynthesis products rema<strong>in</strong> to be elucidated. Thegenome harbors five clusters for NRPSs, five for terpenes, four for PKSsand four for PKS-NRPS-hybrids. Moreover, there are clusters for threesiderophores, a bacterioc<strong>in</strong>, an ecto<strong>in</strong>, a melan<strong>in</strong> and a lantibiotic present.Most of the clusters are not expressed or expressed at very low levelsunder standard laboratory conditions, but gene expression can be <strong>in</strong>ducedunder certa<strong>in</strong> conditions.Here we show transcriptional analyses of some of these gene clusters.First, the stra<strong>in</strong> was cultivated <strong>in</strong> different growth media to analyze thelevel of expression of the key genes from selected biosynthetic geneclusters by reverse transcriptase PCR (RT-PCR). RNA samples were takenat different time po<strong>in</strong>ts from the various liquid cultures. The obta<strong>in</strong>ed geneexpression data will facilitate the identification of the desired compounds.In a parallel approach cluster 1, a lantibiotic-like gene cluster, was <strong>in</strong>vestigated<strong>in</strong> heterologous expression studies. Cluster 1 consists of a two-gene transporter,a putative lantibiotic prepeptide and a rare putative class IV lantibiotics cyclase.The prepeptide was expressed <strong>in</strong> E. coli and the prepeptide <strong>in</strong> comb<strong>in</strong>ation withthe cyclase was expressed <strong>in</strong> S. lividans Tk 23.1. Wolf and Zähner, 1972. Metabolic products of microorganisms. 99: Kirromyc<strong>in</strong>. Arch.Microbiol. 83,2:147-154.2. Weber et al., 2008. Molecular analysis of the kirromyc<strong>in</strong> biosynthetic gene cluster revealed beta-alan<strong>in</strong>e asprecursor of the pyridone moiety. Chem Biol. 15, 2: 175-88.3. Medema et al., 2011. antiSMASH: rapid identification, annotation and analysis of secondary metabolitebiosynthesis gene clusters <strong>in</strong> bacterial and fungal genome sequences. Nucleic Acids Res. 39: 339-346.MEP032Identification of Gene Clusters for Biosynthesis ofBromotyros<strong>in</strong>e <strong>in</strong> Metagenomes of the Mar<strong>in</strong>e SpongesIanthella basta and Aplys<strong>in</strong>a cavernicolaK. Kunze*, K.-H. van PeeTU Dresden, Institut für Biochemie, Dresden, GermanyMar<strong>in</strong>e sponges (Verongida) are able to produce a set of bioactivemolecules. Among those compounds are bromtyros<strong>in</strong>es and bromotyros<strong>in</strong>ederivatives. Bromtyros<strong>in</strong>es (Bts) are known to have pharmacologicalrelevance. In mar<strong>in</strong>e sponges, Bts are typically located with<strong>in</strong> thespong<strong>in</strong>g/chit<strong>in</strong> based skeleton. They are supposed to protect the chit<strong>in</strong>skeleton from degradation, through chit<strong>in</strong>ase <strong>in</strong>hibition. Bts from thespecies Ianthella basta and Aplys<strong>in</strong>a cavernicola have already beendetected, but were not further <strong>in</strong>vestigated so far. From other biosyntheticpathways, for example the biosynthetic gene cluster of the peptideantibiotic balhimyc<strong>in</strong>, it is known, that halogenation of tyros<strong>in</strong>e residues iscatalysed by flav<strong>in</strong>-dependent halogenases. It should thus be possible todetect the Bt-biosynthesic gene cluster of I.basta and A. cavernicola byus<strong>in</strong>g the degenerated PCR primer pair TyrhalA_for/rev which is specificfor flav<strong>in</strong>-dependent tyros<strong>in</strong>e halogenases. Sponges are known to beassociated to a large amount with bacterial symbionts. Therefore, it seemsquite likely that the bromotyros<strong>in</strong>e producer is rather a bacterial or fungalsymbiont than the sponge itself. To def<strong>in</strong>e the orig<strong>in</strong> of the detected genes,two different methods for the extraction of metagenomic DNA (eDNA; e =environmental) are used. With the first method, the whole eDNA ofsponges is isolated, whereas the second method uses an additionalsymbiont-enrichment-step prior to eDNA extraction. After detection of thehalogenase gene, it should be possible to identify the whole gene cluster byus<strong>in</strong>g a DNA library (<strong>in</strong> form of a fosmid library). F<strong>in</strong>ally, the flav<strong>in</strong>dependenthalogenases will be characterised with respect to itshalogenat<strong>in</strong>g activity and substrate specificity.Miao SC, Andersen RJ, Allen TM. Cytotoxic metabolites from the sponge Ianthella basta collected<strong>in</strong> Papua New Gu<strong>in</strong>ea. J Nat Prod. 1990 Nov-Dec;53(6):1441-6.Thoms C, Wolff M, Padmakumar K, Ebel R, Proksch P. Chemical defense of Mediterraneansponges Aplys<strong>in</strong>a cavernicola and Aplys<strong>in</strong>a aerophoba. Z Naturforsch C. 2004 Jan-Feb;59(1-2):113-22.Pelzer S, Süssmuth R, Heckmann D, Recktenwald J, Huber P, Jung G, Wohlleben W. Identificationand analysis of the balhimyc<strong>in</strong> biosynthetic gene cluster and its use for manipulat<strong>in</strong>g glycopeptidebiosynthesis <strong>in</strong> Amycolatopsis mediterranei DSM5908. Antimicrob Agents Chemother. 1999Jul;43(7):1565-73.Webster NS, Taylor MW. Mar<strong>in</strong>e sponges and their microbial symbionts: love and otherrelationships. Environ Microbiol. 2011 Mar 28. doi: 10.1111/j.1462-2920.2011.02460.x. [Epubahead of pr<strong>in</strong>t] PubMed PMID: 21443739.MEP033Purification and clon<strong>in</strong>g of the O-Methyltransferase ofAlternaria alternataF. Oswald*, K. Brzonkalik, C. Syldatk, A. NeumannKIT, Technische Biologie, Karlsruhe, GermanyBlack-moulds of the genus Alternaria contam<strong>in</strong>ate many foodstuffs andagricultural products. In addition to the economical damage these fungican produce harmful secondary metabolites, the Alternaria tox<strong>in</strong>s. Some ofthese mycotox<strong>in</strong>s such as alternariol (AOH), alternariolmonomethylether(AME), altenuene (ALT) are polyketides and AOH is produced via thepolyketide pathway. AOH is than methylated by the alternariol-omethyltransferase,transferr<strong>in</strong>g a methyl group from SAM to AOH to yieldAME. The enzyme was partially purified and characterized, but thesequence is still unknown (1, 2).The Genome of Alternaria alternata was sequenced by the group of ChrisLawrence (3). In the genome 11 putative genes cod<strong>in</strong>g for polyketidesynthases were identified by Blast-analyses (4). Next to some of thesepolyketide synthetase genes for methyltransferases were also found. As thegenes for secondary metabolite production are usually clustered (5), it is likely,BIOspektrum | Tagungsband <strong>2012</strong>

Hooray! Your file is uploaded and ready to be published.

Saved successfully!

Ooh no, something went wrong!