150When Ms. mazei pWM321-p1687-uidA utilized methanol as a substrate, -glucuronidase activity was almost not detectable <strong>in</strong>dicat<strong>in</strong>g a tightregulation of gene expression by the p1687 promoter. Induction by theaddition of trimethylam<strong>in</strong>e led to a strong <strong>in</strong>crease of expression of theuidA gene and -glucuronidase activity was monitored by the productionof p-nitrophenol from p-nitrophenyl--D-glucuronide.In summary, we describe the first <strong>in</strong>ducible gene expression system <strong>in</strong> Ms.mazei. This will be used for the overproduction and characterization ofprote<strong>in</strong>s that cannot be produced <strong>in</strong> E. coli and other simple expressionsystems. This will be of particular <strong>in</strong>terest for prote<strong>in</strong>s that harbourcomplex prosthetic groups that are hardly found or absent <strong>in</strong> the doma<strong>in</strong>Bacteria, e.g. tungsten enzymes.[1] Metcalf WW, Zhang JK, Apol<strong>in</strong>ario E, Sowers KR, Wolfe RS (1997) A genetic system forArchaea of the genus Methanosarc<strong>in</strong>a: liposome-mediated transformation and construction ofshuttle vectors. PNAS 94: 2626-31.[2] Krätzer C, Car<strong>in</strong>i P, Hovey R, Deppenmeier U (2009) Transcriptional profil<strong>in</strong>g ofmethyltransferase genes dur<strong>in</strong>g growth of Methanosarc<strong>in</strong>a mazei on trimethylam<strong>in</strong>e. J Bacteriol191: 5108-15.OTP056Antibacterial <strong>in</strong>vestigation of Artemisia campestris L (Asteraceae)M. Salem* 1 , A. Alruba 2 , J. El-turby 21 BioTechnology Research Center, Microbiology, Tripoli, Libyan ArabJamabiriya2 Tripoli university, pharmacy Facutly, pharmacy, Tripoli, Libyan ArabJamabiriyaArtemisia campestris L. (Asteraceae) is folk Libyan medic<strong>in</strong>al, smallaromatic perennial shrub that grow <strong>in</strong> North Africa and most of Europe.The grounded of aerial parts was extracted <strong>in</strong> soxhlet apparatussuccessively, each crude extract was subjected to antibacterial evaluationaga<strong>in</strong>st human pathogenic bacteria,Staph.aureus, E.coli, Salmonella spp.And Ps. aerug<strong>in</strong>osa, by us<strong>in</strong>g agar cup-cut diffusion assay .The resultsreported that chloroform and methanolic extracts were effectiveaga<strong>in</strong>stStaph.aureus <strong>in</strong> which shown by MIC is 12.5mg .OTP057Screen<strong>in</strong>g for thermostable cellulases for lignocellulosicbiomass degradationC. Schröder*, V. Bockemühl, G. AntranikianTechnical University Hamburg-Harburg, Technical Microbiology,Hamburg, GermanyExist<strong>in</strong>g bioref<strong>in</strong>eries for ethanol production ma<strong>in</strong>ly use starch-biomasssuch as wheat and corn. To avoid the usage of feed- and foodstuff,lignocellulosic biomass lately atta<strong>in</strong>ed particular <strong>in</strong>terest of research.Lignocellulosic material like wheat straw is a challeng<strong>in</strong>g substrate due tothe compact, often crystall<strong>in</strong>e structure of cellulose-, hemicellulose- andlign<strong>in</strong>-polymers. To obta<strong>in</strong> fermentable sugar-monomers from celluloseand hemicellulose by enzymatic degradation, the wheat straw has to bedecomposed, e.g. by hydrothermal processes.To discover novel thermostable cellulases for degradation of the cellulosicfraction, suitable environmental samples (T = 60-90°C, pH 5-7) wereenriched by us<strong>in</strong>g cellulose as sole carbon source. The DNA of thecultured microbial consortia was isolated for metagenomic libraryconstruction. Subsequently, the gene library was screened for the presenceof cellulase encod<strong>in</strong>g genes by detection of endoglucanase,cellobiohydrolase and -glucosidase activity us<strong>in</strong>g colorimetric activityassays. Additionally, for activity-based screen<strong>in</strong>g, metagenomic librarieswere constructed, directly us<strong>in</strong>g isolated DNA from hot spr<strong>in</strong>gs from theAzores without previous enrichment procedures. Furthermore a sequencebasedscreen<strong>in</strong>g approach was also applied us<strong>in</strong>g sequence data of ametagenome. By align<strong>in</strong>g the nucleotide sequences with known genes,potential cellulase-encod<strong>in</strong>g open read<strong>in</strong>g frames were identified.The activity-based screen<strong>in</strong>g revealed genes encod<strong>in</strong>g putativeendoglucanases and -glucosidases. The sequence-based analysis resulted<strong>in</strong> the detection of one gene encod<strong>in</strong>g another putative endoglucanase.Further work will be performed to express the identified genes <strong>in</strong> a suitablehost system such as E. coli and P. pastoris. The correspond<strong>in</strong>g enzymeswill be tested with regard to activity towards the cellulosic fraction of thedecomposed wheat straw.OTP058Translational regulation <strong>in</strong> Haloferax volcaniiJ. Schmitt*, J. SoppaUniversität Frankfurt, Institut für molekulare Biowissenschaften/AGSoppa, Frankfurt, GermanyTranslational regulation is an important cellular mechanism for geneexpression control and is present <strong>in</strong> all three doma<strong>in</strong>s of life. It enables thecell to answer very rapidly to changes <strong>in</strong> environmental conditions and isthus <strong>in</strong>volved <strong>in</strong> cell survival, differentiation, stress adaptation andresponse to specific stimuli.To ga<strong>in</strong> a global overview of growth phase-dependent translationalregulation translatome analyses were performed with Haloferax volcaniiand Halobacterium sal<strong>in</strong>arum (Lange et al., 2007). Polysome-boundmRNA was separated from free mRNA by sucrose gradient centrifugationand the two mRNA fractions were compared us<strong>in</strong>g DNA microarrays.Thereby it was revealed for the two species that 6% and 20%, respectively,of all genes showed growth phase-dependent differential translationalregulation (Lange et al.,2007). In H. volcanii many transcripts weretranslated with under-average efficiency <strong>in</strong> exponential as well asstationary phase, <strong>in</strong>dicat<strong>in</strong>g that their translation might be <strong>in</strong>duced <strong>in</strong>response to a different stimulus. Therefore, currently translatome analysesare performed after the application of various stress conditions, e.g. highand low osmolarity, high and low temperature, oxidative stress, poorcarbon sources.It was also revealed that the 5´- and 3´-UTRs are necessary and sufficientto transfer translational control from native transcripts to a reportertranscript. The 5´-UTRs are apparently necessary to down-regulateconstitutive translational <strong>in</strong>itiation, while <strong>in</strong>duction of translation isencoded <strong>in</strong> the 3´-UTRs (Brenneis and Soppa, 2009).However, the molecular mechanism and <strong>in</strong>volved prote<strong>in</strong>s are stillunknown. Therefore, the H. volcanii genome was searched for putativeRNA-b<strong>in</strong>d<strong>in</strong>g prote<strong>in</strong>s. To ga<strong>in</strong> <strong>in</strong>sight <strong>in</strong>to their function the respectivegenes for selected prote<strong>in</strong>s were deleted and a conditional overexpressionsystem was generated. Analysis of the deletion and overexpressionmutants is currently under way.C. Lange, A. Zaigler, M. Hammelmann, J. Twellmeyer, G. Raddatz, S.C. Schuster,D. Oesterhelt & J. Soppa (2007) BMC Genomics 8:415M. Brenneis, J. Soppa (2009) PLoS ONE 4(2): e4484OTP059Biocatalytical Cyclization of CitronellalG. Siedenburg* 1 , D. Jendrossek 1 , M. Breuer 2 , B. Juhl 3 , J. Pleiss 3 , M. Seitz 3 ,J. Klebensberger 3 , B. Hauer 31 University of Stuttgart, Institute for Microbiology, Stuttgart, Germany2 BASF SE, Ludwigshafen, Germany3 University of Stuttgart, Institute of Technical Biochemistry, Stuttgart, GermanyHopanoids stabilize the cytoplasm membrane of many bacteria similar tothe function of sterols <strong>in</strong> eukarotes. Key enzyme of hopanoid biosynthesisis the squalene-hopene cyclase (SHC) which catalyzes the polycyclizationreaction of squalene to the pentacyclic triterpene hopene - the precursor ofall hopanoids. The SHC-catalyzed reaction is one of the most complexbiochemical reactions and <strong>in</strong>volves the formation of 5 r<strong>in</strong>g structures, thealteration of 13 covalent bonds, and the formation of 9 stereo centers.Zymomonas mobilis- an important ethanol produc<strong>in</strong>g bacterium - harbourstwo SHC-encod<strong>in</strong>g genes that were cloned and over-expressed <strong>in</strong> E. coli.Hopene-form<strong>in</strong>g activity was confirmed for both SHCs. One of the SHCswas additionally able to cyclise the monoterpene citronellal to isopulegol.This f<strong>in</strong>d<strong>in</strong>g is contrary to former results us<strong>in</strong>g the model SHC fromAlicyclobacillus acidocaldarius 1, 2 and several other SHCs cloned fromdifferent organisms <strong>in</strong> this study. Isopulegol is used as a flavor <strong>in</strong> differentproducts and is an important <strong>in</strong>termediate <strong>in</strong> the production of menthol.Our f<strong>in</strong>d<strong>in</strong>g is remarkable because cyclization of mono-, sequi- andditerpenes normally requires activation of the l<strong>in</strong>ear precursor bydiphosphate 3, 4 . Depend<strong>in</strong>g on the stereo-configuration of the substratedifferent isopulegol stereoisomers were formed. Cyclization of citronellalby SHC is the first example of an enzyme-catalyzed cyclization of a notactivatedl<strong>in</strong>ear monoterpene.Further work focussed on the optimization of the SHC-catalyzedcyclization of citronellal by mutagenesis of SHC active site am<strong>in</strong>o acids.Several SHC mute<strong>in</strong>s revealed a strong <strong>in</strong>crease <strong>in</strong> isopulegol-form<strong>in</strong>gactivity. Some mute<strong>in</strong>s were able to catalyze an almost completeconversion of citronellal to isopulegol ( 90%) compared to only 30% forthe wild type enzyme. Interest<strong>in</strong>gly, the stereo-configuration and therelative isomer composition of the product were altered <strong>in</strong> some mute<strong>in</strong>s.An overview on the cyclization potential of wild type and mutant SHCsfrom different sources will be given.1. Hosh<strong>in</strong>o, T.; Ohashi, S.Org.Lett.2002, 4, 2553-2556.2. Wendt, K. U.; Lenhart, A.; Schulz, G. E.J Mol Biol1999, 286, (1), 175-87.3. Bohlmann, J.; Meyer-Gauen, G.; Croteau, R.Proc Natl Acad Sci U S A1998, 95, (8), 4126-33.4. Davis, E. M.; Croteau, R.Top. Curr. Chem.2000, 209, 53-95.OTP060Development of a novel system for the functional expressionand screen<strong>in</strong>g of membrane prote<strong>in</strong>sA. Malach* 1 , A. Heck 1 , K.-E. Jaeger 2 , T. Drepper 11 He<strong>in</strong>rich-He<strong>in</strong>e-Universität, Institut für molekulare Enzymtechnolgie - AGDrepper, Düsseldorf, Germany2 He<strong>in</strong>rich-He<strong>in</strong>e-Universität, Institut für molekulare Enzymtechnolgie,Düsseldorf, GermanyThe heterologous expression of membrane prote<strong>in</strong>s and enzymes us<strong>in</strong>gstandard expression hosts as E. coli is often hampered by many differentfactors <strong>in</strong>clud<strong>in</strong>g low expression efficiencies, degradation of the product,product toxicity, <strong>in</strong>sufficient prote<strong>in</strong> fold<strong>in</strong>g or formation of <strong>in</strong>clusionBIOspektrum | Tagungsband <strong>2012</strong>
151bodies. Hence, we started to develop a novel bacterial expression systemfor the synthesis of membrane prote<strong>in</strong>s that is based on the phototsyntheticbacterium Rhodobacter capsulatus. Due to its unique physiologicalproperties the photosynthetic bacterium R. capsulatus is particularly suitedfor the high-level expression of membrane bound enzymes <strong>in</strong> an activeform: Phototrophic growth conditions <strong>in</strong>duce an <strong>in</strong>tracellulardifferentiation of the <strong>in</strong>ner membrane, lead<strong>in</strong>g to the formation ofmembrane vesicles <strong>in</strong> R. capsulatus. The membrane vesicles <strong>in</strong> turnprovide an <strong>in</strong>tr<strong>in</strong>sically high prote<strong>in</strong> fold<strong>in</strong>g and <strong>in</strong>corporation capacity.In order to evaluate the optimal growth conditions for heterologousmembrane prote<strong>in</strong> expression we started to express two differentmembrane prote<strong>in</strong>s, the bacteriorhodops<strong>in</strong> from Halobacterium sal<strong>in</strong>ariumas well as the squalene epoxidase from Stigmatella aurantiaca, underphototrophic, non-phototrophic as well as shifted conditions. Furthermore,<strong>in</strong>tegration of the heterologous membrane prote<strong>in</strong>s <strong>in</strong>to the photosyntheticmembrane vesicles was confirmed by prote<strong>in</strong> localization studies. Thenovel R. capsulatus expression system will now be used to identify novelmembrane bound monooxgenases from metagenomic libraries.OTP061Dehalococcoides sp. stra<strong>in</strong> CBDB1 reductively dehalogenatesbromobenzenes to benzene <strong>in</strong> a respiratory processM. Cooper* 1 , A. Wagner 2 , S. Ferdi 2 , J. Seifert 1 , L. Adrian 11 Helmholtz Centre for Environmental Research, Isotope Biogeochemistry,Leipzig, Germany2 Technische Universität Berl<strong>in</strong>, Angewandte Biochemie, Berl<strong>in</strong>, GermanyBrom<strong>in</strong>ated aromatics have broad applications <strong>in</strong> <strong>in</strong>dustry as flameretardants and fumigants or as <strong>in</strong>termediates dur<strong>in</strong>g the synthesis of dyes,agrochemicals, pharmaceuticals and herbicides. By now, many brom<strong>in</strong>atedcompounds are widespread contam<strong>in</strong>ants <strong>in</strong> the environment and areregarded as potentially harmful to humans and the environment. However,brom<strong>in</strong>ated aromatics are also released naturally, particularly <strong>in</strong> mar<strong>in</strong>eecosystems by algae, polychaets, sponges and molluscs. The completeremoval of all halogen substituents is a crucial step <strong>in</strong> the degradationprocess and for further m<strong>in</strong>eralization of halogenated compounds. Abacterial group which is known for its ability to reductively dehalogenate abroad range of toxic chlor<strong>in</strong>ated compounds such as chloroethenes,chlorobenzenes, chlorobiphenyls and diox<strong>in</strong>s is the genus of theDehalococcoides.In this study we <strong>in</strong>vestigated whether the pure Dehalococcoides sp. stra<strong>in</strong>CBDB1 is able to dehalogenate brom<strong>in</strong>ated benzenes, which were chosenas ‘model’ molecules for other more complex brom<strong>in</strong>ated compounds fromnatural or anthropogenic sources. Cultivation of stra<strong>in</strong> CBDB1 with 1,2,4-tribromobenzene, three different dibromobenzene congeners ormonobromobenzene revealed that all tested bromobenzenes werereductively dehalogenated to benzene <strong>in</strong> a respiratory process. Growthyields of 1.8 x 10 14 to 2.8 x 10 14 cells per mol of bromide released wereobta<strong>in</strong>ed. Additionally a newly designed methylviologen based enzymeactivity test was established to assess enzyme activity towardsbromobenzenes. Furthermore mass spectrometric analyses of reductivedehalogenases were carried out to ga<strong>in</strong> deeper <strong>in</strong>sight <strong>in</strong>to expressionpatterns of reductive dehalogenases after cultivation with differentbromobenzenes. Our f<strong>in</strong>d<strong>in</strong>gs <strong>in</strong>dicate that the same enzymes are <strong>in</strong>volveddur<strong>in</strong>g bromobenzene reduction as dur<strong>in</strong>g chlorobenzene reduction, andsuggest that Dehalococcoides sp. stra<strong>in</strong> CBDB1 can be used forremediation of brom<strong>in</strong>ated aromatic contam<strong>in</strong>ants.OTP062BlueTox: A novel genetically encoded photosensitizerS. Endres* 1 , J. Walter 2 , J. Potzkei 1 , M. W<strong>in</strong>gen 1 , A. Heck 1 , K.-E. Jaeger 3 ,T. Drepper 11 He<strong>in</strong>rich-He<strong>in</strong>e-University, Institute of Molecular Enzyme Technology, WGDrepper, Düsseldorf, Germany2 He<strong>in</strong>rich-He<strong>in</strong>e-University, Department of Neurology, Düsseldorf, Germany3 He<strong>in</strong>rich-He<strong>in</strong>e-University, Institute of Molecular Enzyme Technology,Düsseldorf, GermanyFluorescent active dyes and prote<strong>in</strong>s like the green fluorescent prote<strong>in</strong>(GFP), isolated from the jellyfish Aequorea victoria and members of theGFP-like prote<strong>in</strong> family generates reactive oxygen species (ROS) as abyproduct of its fluorescence activity (1) . Thereby, the amount of generatedROS is strongly dependent on the prote<strong>in</strong>s structure (2,3) . One example for ahigh-level ROS-produc<strong>in</strong>g fluorescent prote<strong>in</strong> is KillerRed, a derivate ofthe non-fluorescent chromoprote<strong>in</strong> anm2CP isolated from Anthemedusaesp. (4) . This photosensitizer enables the light-mediated directed <strong>in</strong>activationof targeted cell-structures and/or whole cells by application of thechromophore-assisted-light-<strong>in</strong>activation (CALI-) technique(5) . As analternative to this red fluorescent photosensitizer we developed, on basis ofa FMN-based-fluorescent-prote<strong>in</strong> (FbFP) (6) , the novel photosensitizerBlueTox. BlueTox harbors a LOV-doma<strong>in</strong> (light, oxygen, voltage) thatb<strong>in</strong>ds flav<strong>in</strong>mononucleotide (FMN) as fluorophore and shows thecharacteristic excitation and emission maxima at 450nm ex /495nm em , respectively.We demonstrated the blue-light <strong>in</strong>duced, ROS-mediated photosensitiz<strong>in</strong>geffect of BlueTox by heterologous expression of the photosensitizer <strong>in</strong>Escherichia coli and subsequent time-resolved irradiation studies. Theresults of our <strong>in</strong> vivo analyses revealed a significant correlation betweendecrease of the amount of liv<strong>in</strong>g cells and irradiation time. Therefore,BlueTox is a powerful tool for light-mediated <strong>in</strong>activation of bacteria withhigh spatio-temporal resolution.1Jiménez-Banzo, A., S. Nonell, et al. (2008). "S<strong>in</strong>glet Oxygen Photosensitization by EGFP and itsChromophore HBDI." Biophysical journal 94 (1): 168-172.2Pletnev, S., N. G. Gurskaya, et al. (2009). "Structural basis for phototoxicity of the genetically encodedphotosensitizer KillerRed." The Journal of biological chemistry 284 (46): 32028-32039.3Carpentier, P., S. Violot, et al. (2009). "Structural basis for the phototoxicity of the fluorescent prote<strong>in</strong>KillerRed. "FEBS letters 583 (17): 2839-2842.4Bul<strong>in</strong>a, M. E., D. M. Chudakov, et al. (2006). "A genetically encoded photosensitizer." Naturebiotechnology 24 (1): 95-99.5Bul<strong>in</strong>a, M. E., K. A. Lukyanov, et al. (2006). "Chromophore-assisted light <strong>in</strong>activation (CALI) us<strong>in</strong>g thephototoxic fluorescent prote<strong>in</strong> KillerRed. "Nature protocols 1 (2): 947-953.6Drepper, T., T. Eggert, et al. (2007). "Reporter prote<strong>in</strong>s for <strong>in</strong> vivo fluorescence without oxygen." Naturebiotechnology 25 (4): 443-445.OTP063Production of the liposomase <strong>in</strong> Clostridium sporogenes for thetherapeutic use <strong>in</strong> tumor therapyK. Riegel* 1 , D. Meisohle 2 , P. Dürre 11 Universität Ulm, Institut für Mikrobiologie und Biotechnologie, Ulm, Germany2 Universität Ulm, Institut für Mediz<strong>in</strong>ische Mikrobiologie and Hygiene, Ulm,GermanySolid tumors and their environment possess certa<strong>in</strong> features that are unique<strong>in</strong> the human body. The most strik<strong>in</strong>g one is oxygen deprivation. Theseregions offer obligate anaerobic bacteria, such as clostridia, optimalconditions for growth. However, the colonization of the tumors alone isnot sufficient for a complete tumor regression (Ryan et al., 2006). Bygenetic modifications, these bacteria can function as vectors deliver<strong>in</strong>gtherapeutic prote<strong>in</strong>s or prodrug-convert<strong>in</strong>g enzymes to their targetsresult<strong>in</strong>g <strong>in</strong> a direct effect on the rema<strong>in</strong><strong>in</strong>g tumor tissue.In this project, the liposomase is used for this purpose. The liposomase is aprote<strong>in</strong> orig<strong>in</strong>ally isolated from Clostridium novyi that can destroyliposomes (Cheong et al., 2006). Liposomes are membranous vesicleswhich can function as carrier for anticancer drugs such as doxorubic<strong>in</strong>, asthese vesicles specifically accumulate <strong>in</strong> tumor tissues. However, the drugrelease from the liposomes is very slow due to their chemical and physicalstability (Gabizon et al., 2006). Therefore, a genetically eng<strong>in</strong>eered stra<strong>in</strong>of Clostridium sporogenes produc<strong>in</strong>g this enzyme should greatly enhancedrug delivery from liposomes. C. sporogenes is a proteolytic and sporeform<strong>in</strong>gorganism that proved to be an excellent colonizer of hypoxictumor tissue (Brown and Liu, 2004). For the expression of the liposomasegene <strong>in</strong> this organism a prote<strong>in</strong> expression system based on the T7 systemwas constructed. The result<strong>in</strong>g expression mutant of C. sporogenes shouldproduce and secrete the liposomase <strong>in</strong> the surround<strong>in</strong>g medium <strong>in</strong> asufficient concentration provid<strong>in</strong>g a more effective strategy <strong>in</strong> the fightaga<strong>in</strong>st cancer.Brown, J.M., & Liu, S.C., 2004. Use of anaerobic bacteria for cancer therapy. In: Nakano, M.M., & Zuber P.Strict and facultative anaerobes - medical and environmental aspects. Horizon Bioscience, Wymondham,England, 211-220.Cheong I., Huang X., Bettegowda C., Diaz L.A. Jr., K<strong>in</strong>zler K.W., Zhou S. and Vogelste<strong>in</strong> B., 2006. Abacterial prote<strong>in</strong> enhances the release and efficacy of liposomal cancer drugs. Science, 314, 1308-1311.Gabizon A.A., Shmeeda H. and Zakipsky S., 2006. Pros and Cons of the liposome platform <strong>in</strong> cancer drugtarget<strong>in</strong>g. Journal of Liposome Research, 16, 175-183.Ryan, R.M., Green, J., & Lewis, C.E., 2006. Use of bacteria <strong>in</strong> anti-cancer therapies. BioEssays, 28, 84-94.OTP064ClubSub-P: cluster-based subcellular localization predictionfor Gram-negative bacteria and archaeaN. Paramasivam*, D. L<strong>in</strong>keMPI Developmental Biology, Prote<strong>in</strong> Evolution, Tuebigen, GermanyThe subcellular localization (SCL) of prote<strong>in</strong>s provides important clues totheir function <strong>in</strong> a cell. In our efforts to predict useful vacc<strong>in</strong>e targetsaga<strong>in</strong>st Gram-negative bacteria, we noticed that misannotated start codonsfrequently lead to wrongly assigned SCLs. This and other problems <strong>in</strong>SCL prediction, such as the relatively high false-positive and falsenegativerates of some tools, can be avoided by apply<strong>in</strong>g multipleprediction tools to groups of homologous prote<strong>in</strong>s.Here we present ClubSub-P, an onl<strong>in</strong>e database that comb<strong>in</strong>es exist<strong>in</strong>gSCL prediction tools <strong>in</strong>to a consensus pipel<strong>in</strong>e from more than 600proteomes of fully sequenced microorganisms. On top of the consensusprediction at the level of s<strong>in</strong>gle sequences, the tool uses clusters ofhomologous prote<strong>in</strong>s from Gram-negative bacteria and from Archaea toelim<strong>in</strong>ate false-positive and false-negative predictions. ClubSub-P canassign the SCL of prote<strong>in</strong>s from Gram-negative bacteria and Archaea withhigh precision. The database is searchable, and can easily be expandedus<strong>in</strong>g either new bacterial genomes or new prediction tools as they becomeavailable. This will further improve the performance of the SCL prediction, aswell as the detection of misannotated start codons and other annotation errors.ClubSub-P is available onl<strong>in</strong>e athttp://toolkit.tueb<strong>in</strong>gen.mpg.de/clubsubp/Paramasivam N and L<strong>in</strong>ke D (2011) ClubSub-P: cluster-based subcellular localization predictionfor Gram-negative bacteria and archaea. Front. Microbio. 2:218. doi: 10.3389/fmicb.2011.00218BIOspektrum | Tagungsband <strong>2012</strong>
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Instruments that are music to your
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General Information2012 Annual Conf
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SPONSORS & EXHIBITORS9Sponsoren und
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52ISV01Die verborgene Welt der Bakt
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76[3]. In summary, hypoxia has a st
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82FUP018FbFP as an Oxygen-Independe
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88laboratory conditions the non-car
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92provide an insight into the regul
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94MEP007Identification and toxigeni
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96various carotenoids instead of de
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- Page 118 and 119: 118virulence provides novel targets
- Page 120 and 121: 120proteins are excreted. On the co
- Page 122 and 123: 122MPP054BopC is a type III secreti
- Page 124 and 125: 124MPP062Invasiveness of Salmonella
- Page 126 and 127: 126Finally, selected strains were c
- Page 128 and 129: 128interactions. Taken together, ou
- Page 130 and 131: 130forS. Typhimurium. Uncovering th
- Page 132 and 133: 132understand the exact role of Fla
- Page 134 and 135: 134heterotrimeric, Rrp4- and Csl4-c
- Page 136 and 137: 136OTV024Induction of systemic resi
- Page 138 and 139: 13816S rRNA genes was applied to ac
- Page 140 and 141: 140membrane permeability of 390Lh -
- Page 142 and 143: 142bacteria in situ, we used 16S rR
- Page 144 and 145: 144bacteria were resistant to acid,
- Page 146 and 147: 1461. Ye, L.D., Schilhabel, A., Bar
- Page 148 and 149: 148using real-time PCR. Activity me
- Page 152 and 153: 152OTP065The role of GvpM in gas ve
- Page 154 and 155: 154OTP074Comparison of Faecal Cultu
- Page 156 and 157: 156OTP084The Use of GFP-GvpE fusion
- Page 158 and 159: 158compared to 20 ºC. An increase
- Page 160 and 161: 160characterised this plasmid in de
- Page 162 and 163: 162Streptomyces sp. strain FLA show
- Page 164 and 165: 164The study results indicated that
- Page 166 and 167: 166have shown direct evidences, for
- Page 168 and 169: 168biosurfactant. The putative lipo
- Page 170 and 171: 170the absence of legally mandated
- Page 172 and 173: 172where lowest concentrations were
- Page 174 and 175: 174PSV008Physiological effects of d
- Page 176 and 177: 176of pH i in vivo using the pH sen
- Page 178 and 179: 178PSP010Crystal structure of the e
- Page 180 and 181: 180PSP018Screening for genes of Sta
- Page 182 and 183: 182In order to overproduce all enzy
- Page 184 and 185: 184substrate specific expression of
- Page 186 and 187: 186potential active site region. We
- Page 188 and 189: 188PSP054Elucidation of the tetrach
- Page 190 and 191: 190family, but only one of these, t
- Page 192 and 193: 192network stabilizes the reactive
- Page 194 and 195: 194conditions tested. Its 2D struct
- Page 196 and 197: 196down of RSs2430 influences the e
- Page 198 and 199: 198demonstrating its suitability as
- Page 200 and 201:
200RSP025The pH-responsive transcri
- Page 202 and 203:
202attracted the attention of molec
- Page 204 and 205:
204A (CoA)-thioester intermediates.
- Page 206 and 207:
206Ser46~P complex. Additionally, B
- Page 208 and 209:
208threat to the health of reefs wo
- Page 210 and 211:
210their ectosymbionts to varying s
- Page 212 and 213:
212SMV008Methanol Consumption by Me
- Page 214 and 215:
214determined as a function of the
- Page 216 and 217:
216Funding by BMWi (AiF project no.
- Page 218 and 219:
218broad distribution in nature, oc
- Page 220 and 221:
220SMP027Contrasting assimilators o
- Page 222 and 223:
222growing all over the North, Cent
- Page 224 and 225:
224SMP044RNase J and RNase E in Sin
- Page 226 and 227:
226labelled hydrocarbons or potenti
- Page 228 and 229:
228SSV009Mathematical modelling of
- Page 230 and 231:
230SSP006Initial proteome analysis
- Page 232 and 233:
232nine putative PHB depolymerases
- Page 234 and 235:
234[1991]. We were able to demonstr
- Page 236 and 237:
236of these proteins are putative m
- Page 238 and 239:
238YEV2-FGMechanistic insight into
- Page 240 and 241:
240 AUTORENAbdel-Mageed, W.Achstett
- Page 242 and 243:
242 AUTORENFarajkhah, H.HMP002Faral
- Page 244 and 245:
244 AUTORENJung, Kr.Jung, P.Junge,
- Page 246:
246 AUTORENNajafi, F.MEP007Naji, S.
- Page 249 and 250:
249van Dijk, G.van Engelen, E.van H
- Page 251 and 252:
251Eckhard Boles von der Universit
- Page 253 and 254:
253Anna-Katharina Wagner: Regulatio
- Page 255 and 256:
255Vera Bockemühl: Produktioneiner
- Page 257 and 258:
257Meike Ammon: Analyse der subzell
- Page 259 and 260:
springer-spektrum.deDas große neue