20.07.2015 Views

VAAM-Jahrestagung 2012 18.–21. März in Tübingen

VAAM-Jahrestagung 2012 18.–21. März in Tübingen

VAAM-Jahrestagung 2012 18.–21. März in Tübingen

SHOW MORE
SHOW LESS

Create successful ePaper yourself

Turn your PDF publications into a flip-book with our unique Google optimized e-Paper software.

186potential active site region. We demonstrated the ability of Mcup_0683 to b<strong>in</strong>dsulfur via MALDI-TOF mass spectrometry. These f<strong>in</strong>d<strong>in</strong>gs provide strongmotivation to <strong>in</strong>vestigate the potential of prote<strong>in</strong>s Mcup_0681-0683 to acttogether <strong>in</strong> a sulfur relay system <strong>in</strong>volved <strong>in</strong> dissimilatory sulfur oxidation <strong>in</strong>Metallosphaera cupr<strong>in</strong>a and possibly also <strong>in</strong> other archaea and bacteria.1. Liu, L.J., et al. 2011. Int. J. Syst. Evol. Microbiol.,61: 2395-2400.2. Liu, L.J., et al. 2011. J. Bacteriol.,193: 3387-3388.3. Ikeuchi, Y., et al. 2006. Mol. Cell,21: 97-108.4. Dahl, C., et al. 2008. J. Mol. Biol,384: 1287-1300.5. Auernik, K., et al. 2008. Appl. Environ. Microbiol.,74: 7723-7732.6. Quatr<strong>in</strong>i, R., et al. 2009. BMC Genomics,10: 394.PSP045Elucidation of the Periplasmic Cytochrome Network <strong>in</strong>Shewanella oneidensis MR-1G. Sturm*, J. GescherKarlsruher Institut für Technologie, Angewandte Biologie, Karlsruhe, GermanyShewanella oneidensis MR-1 is a Gram-negative soil bacterium whichshows an astonish<strong>in</strong>g versatility <strong>in</strong> terms of electron acceptors it can use.The predom<strong>in</strong>ant prote<strong>in</strong>s driv<strong>in</strong>g respiratory electron transfer from thecytoplasm to periplasmic space and from there to the outer membrane arec-type cytochromes. Interest<strong>in</strong>gly, S. oneidensis cells express a largenumber of periplasmic c-type cytochromes that are not primarily <strong>in</strong>volved<strong>in</strong> iron reduction (i.e. SoxA-like, NrfA and CcpA) even when they growunder iron reduc<strong>in</strong>g conditions. Furthermore, our experiments revealedthat iron grown cells are able to conduct electron transfer to a multitude ofelectron acceptors although they had not been <strong>in</strong> contact to one of theseacceptors <strong>in</strong> the growth medium. It seems fairly possible that theseperiplasmic c-type cytochromes build up a network which allows electronexchange between respiratory pathways. This feature would certa<strong>in</strong>lyenable the cell to quickly respond to changes <strong>in</strong> the availability of electronacceptors that occur <strong>in</strong> its environment. Examples for connected respiratorypathways will be presented. Still, although it is generally believed that c-typecytochromes conduct rather unspecific electron transfer it was possible to showthat is not necessarily the case. The electron transport pathway to the peroxidaseCcpA is an example for specificity with<strong>in</strong> c-type cytochrome dependentelectron transfer. The two cytochromes <strong>in</strong>volved, CcpA and ScyA, aredisconnected from other pathways. CcpA functions as a peroxidase protect<strong>in</strong>gthe cell aga<strong>in</strong>st oxidative stress caused by hydrogen peroxide possibly produceddur<strong>in</strong>g dissimilatory iron reduction via the Fenton reaction. CcpA ga<strong>in</strong>s itselectrons exclusively from ScyA, a small monoheme cytochrome. In this studythe range and dynamic of the periplasmic c-type cytochrome network will bepresented <strong>in</strong> further detail.PSP046Complete -oxidation of the acyl side cha<strong>in</strong> of cholate byPseudomonas sp. stra<strong>in</strong> Chol1 <strong>in</strong> vitroJ. Holert* 1 , O. Yücel 2 , Ž. Kuli 3 , H. Möller 3 , B. Philipp 11 WWU Münster, IMMB, Münster, Germany2 University of Konstanz, Biology, Konstanz, Germany3 University of Konstanz, Chemistry, Konstanz, GermanySteroids are ubiquitous natural compounds with diverse functions <strong>in</strong>eukaryotes. In bacteria, steroids occur only as rare exceptions but the ability oftransform<strong>in</strong>g and degrad<strong>in</strong>g steroids is widespread among bacteria.We <strong>in</strong>vestigate bacterial steroid degradation us<strong>in</strong>g the bile salt cholate as amodel compound and Pseudomonas sp. stra<strong>in</strong> Chol1 as a model organism.Cholate degradation is <strong>in</strong>itiated by oxidative reactions at the A-r<strong>in</strong>gfollowed by cleavage of the side cha<strong>in</strong> attached to C17. Mutants of stra<strong>in</strong>Chol1 with defects <strong>in</strong> the genes skt and acad are defect <strong>in</strong> the degradationof the acyl side cha<strong>in</strong>. In culture supernatants of these mutants, (22E)-7,12-dihydroxy-3-oxochola-1,4,22-triene-24-oate (DHOCTO) and7,12-dihydroxy-3-oxopregna-1,4-diene-20-carboxylate (DHOPDC),respectively, accumulate as dead end products. The structure of thesecompounds <strong>in</strong>dicates that degradation of the acyl side cha<strong>in</strong> proceeds via-oxidation but explicit <strong>in</strong> vitro data was miss<strong>in</strong>g so far. We <strong>in</strong>vestigatedthe degradation of the acyl side <strong>in</strong> vitro us<strong>in</strong>g cell extracts of stra<strong>in</strong> Chol1<strong>in</strong> the presence of co-factors (CoA, ATP, NAD + andphenaz<strong>in</strong>emetholsulfate). When cholate or 1,4 -3-ketocholate were used assubstrates, 1,4 -3-ketocholyl-CoA was the end product <strong>in</strong>dicat<strong>in</strong>g thatfurther oxidation of the acyl side cha<strong>in</strong> was not possible <strong>in</strong> vitro under theapplied conditions. When either DHOCTO or DHOPDC were used thecomplete side cha<strong>in</strong> was cleaved off <strong>in</strong> vitro lead<strong>in</strong>g to 7,12-dihydroxyandrosta-1,4-diene-3,17-dione(12-DHADD) as end product. With bothsubstrates the CoA-ester of DHOPDC accumulated transiently <strong>in</strong> the assay.With cell extracts of the skt mutant DHOCTO was converted toDHOCTO-CoA which was not further degraded to 12-DHADD. Withcell extracts of the acad mutant DHOCTO was converted to DHOPDC-CoA, which was also not further degraded. Thus, the phenotypes of bothmutants were confirmed by these <strong>in</strong> vitro assays.To our knowledge this is the first detailed <strong>in</strong> vitro demonstration of thecomplete degradation of a steroid side cha<strong>in</strong> by -oxidation <strong>in</strong> bacteria.Furthermore, our results <strong>in</strong>dicate that the dehydrogenation reactions of 1,4 -3-ketocholyl-CoA and of DHOPDC-CoA are the rate limit<strong>in</strong>g steps <strong>in</strong>this -oxidation pathway.PSP047Genomic plasticity responsible for dissimilatory iron reduction<strong>in</strong> Shewanella oneidensis MR-1S. Stephan*, M. Schicklberger, J. GescherKarlsruher Institut für Technologie, Angewandte Biologie, Karlsruhe, GermanyThe ability of the facultative anaerobic bacterium Shewanella oneidensisMR-1 to respire poorly soluble electron acceptors under anoxic conditionsrelies on a complex electron transfer network. Four dist<strong>in</strong>ct pathwayspredicted to facilitate respiratory electron flow to extracellular electronacceptors are encoded <strong>in</strong> the genome of S. oneidensis MR-1. Thesepathways share MtrA (metalreduc<strong>in</strong>g prote<strong>in</strong> A) and MtrB paralogues,which are periplasmic c-type chytochromes and <strong>in</strong>tegral outer membranebeta-barrel prote<strong>in</strong>s, respectively (1). Interest<strong>in</strong>gly gene clusters encod<strong>in</strong>gMtrA and MtrB homologs are phylogenetically distributed among allclasses of proteobacteria and the correspond<strong>in</strong>g prote<strong>in</strong>s were shown to benot only <strong>in</strong>volved <strong>in</strong> ferric iron reduction but also ferrous iron oxidation (2).A mtrB null mutant stra<strong>in</strong> <strong>in</strong> Shewanella lacks the ability to respire onFe(III)-oxides (3). Interst<strong>in</strong>gly, after prolonged <strong>in</strong>cubation supressormutations occur that rescue the mutant phenotype. In this work we isolatedand characterized such a mtrB suppressor mutant. Molecular and geneticanalysis revealed that the suppression relies on a functional replacement ofMtrB and MtrA by homologous prote<strong>in</strong>s encoded by SO4359 and SO4360respectively. This replacement underlies a transcriptional upregulation ofthe SO4362-SO4357 gene cluster which was found to be due to an<strong>in</strong>sertion sequence (ISSod1) belong<strong>in</strong>g to the IS-1 superfamily generat<strong>in</strong>ga constitutively active hybrid promoter. Here we could show for the first time afunctional replacement of the MtrAB subcomplex by a complex consistent ofhomologous prote<strong>in</strong>s and the <strong>in</strong>volvment of SO4360 as periplasmic electroncarrier <strong>in</strong> dissimilatory iron reduction <strong>in</strong> Shewanella oneidensis MR-1.(1) Gralnick JA, Vali H, Lies DP, Newman DK (2006): Extracellular respiration of dimethylsulfoxide by Shewanella oneidensis stra<strong>in</strong> MR-1.(2) Jiao Y, Newman DK (2007): ThepioOperon Is Essential for Phototrophic Fe(II) Oxidation <strong>in</strong>Rhodopseudomonas palustris TIE-1.(3) Beliaev AS, Saffar<strong>in</strong>i DA (1998): Shewanella putrefaciens mtrB Encodes an Outer MembraneProte<strong>in</strong> Required for Fe(III) and Mn(IV) Reduction.PSP048The phosphotransferase system CAC0231-CAC0234 controlsfructose utilization of Clostridium acetobutylicumC. Voigt*, H. Janssen, R.-J. FischerInstitute of Biological Sciences/University of Rostock, Division ofMicrobiology, Rostock, GermanyClostridium acetobutylicum is well characterized by its biphasicfermentation metabolism. At higher pH values exponentially grow<strong>in</strong>g cellsusually produce acetate and butyrate as ma<strong>in</strong> fermentation productswhereas when the pH has dropped below 5.0 the metabolism switches to‘solventogenesis’ with the dom<strong>in</strong>at<strong>in</strong>g fermentation products butanol andacetone. As a carbon and energy source a variety of carbohydrates likeglucose, fructose or xylose can be utilized by C. acetobutylicum.Generally, carbohydrates were taken up via three types of transporters:symporter, ATP-b<strong>in</strong>d<strong>in</strong>g cassette (ABC) transporter andphosphotransferase systems (PTS). For the uptake of hexoses, hexitols anddisaccharides thirteen PTS have been identified <strong>in</strong> C. acetobutylicum.Among them, three PTS are supposed to be responsible for the uptake offructose. The apparent primary fructose transport system is encoded by apolycistronic operon (cac0231-cac0234) <strong>in</strong>clud<strong>in</strong>g a putative DeoR-typetranscriptional regulator (CAC0231), a 1-phosphofructok<strong>in</strong>ase(CAC0232), a PTS IIA (CAC0233) and a PTS IIBC (CAC0234). Toanalyze the role of the PTS dur<strong>in</strong>g growth on fructose as sole carbonsource, each s<strong>in</strong>gle gene of the operon (cac0231-cac0234) was specifically<strong>in</strong>terrupted us<strong>in</strong>g the ClosTron® system. All mutant stra<strong>in</strong>s showedimpaired growth due to reduced fructose consumption. Interest<strong>in</strong>gly, aconcomitant loss of solvent production was monitored <strong>in</strong>dicat<strong>in</strong>g athreshold of sugar concentration for <strong>in</strong>itiation of the metabolic switch.Moreover, the transcriptional regulator CAC0231 was overexpressed <strong>in</strong> E.coli and purified for electrophoretic mobility shift assays (EMSA). Here, aputative b<strong>in</strong>d<strong>in</strong>g motif was identified and proved by a specific b<strong>in</strong>d<strong>in</strong>g ofCAC0231 to the promoter region of cac0231-cac0234.BIOspektrum | Tagungsband <strong>2012</strong>

Hooray! Your file is uploaded and ready to be published.

Saved successfully!

Ooh no, something went wrong!