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VAAM-Jahrestagung 2012 18.–21. März in Tübingen

VAAM-Jahrestagung 2012 18.–21. März in Tübingen

VAAM-Jahrestagung 2012 18.–21. März in Tübingen

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74as health problem due to the allergenic potential of these exceptional stablecompounds.Although their abundance <strong>in</strong> nature, little is known about thebiodegradation of this substance class and only for few stra<strong>in</strong>s hydrolysisof DKPs is reported. In this study we present different approaches toidentify potential DKP degrad<strong>in</strong>g stra<strong>in</strong>s and enzymes, test<strong>in</strong>g eight DKPssynthesized from prote<strong>in</strong>ogenic am<strong>in</strong>o acids and three from nonprote<strong>in</strong>ogenicam<strong>in</strong>o acids (e.g. sarcos<strong>in</strong>e) as substrates:- Despite peptidase activity aga<strong>in</strong>st some DKPs has been reported sometime ago [3] tested activities could not be confirmed <strong>in</strong> our lab. Furtherexperiments with additional peptidases <strong>in</strong>dicate peptidase stability for allused DKPs.- Recently certa<strong>in</strong> cyclic amidases (hydanto<strong>in</strong>ases) have been shown toalso cleave dihydropyrimid<strong>in</strong>e derivatives which are structurally related toDKPs [4]. We could demonstrate degradation of different DKPs by threestra<strong>in</strong>s exhibit<strong>in</strong>g such cyclic amidase activity. Whether the responsibleenzymes are the same is subject of further <strong>in</strong>vestigations.- Paenibacillus chibensis (DSM 329) and Streptomyces flavovirens (DSM40062) have been described to hydrolyze the aspartame derivativecyclo(L-Asp-L-Phe) [5]. In our studies this activity appeared to besubstrate <strong>in</strong>ducible <strong>in</strong> S. flavovirens but not <strong>in</strong> P. chibensis. Moreover wedetected the degradation of an additional substrate cyclo(L-Asp-L-Asp) byP. chibensis while no other of the tested DKPs was hydrolyzed by one ofthese stra<strong>in</strong>s.- Two bacterial stra<strong>in</strong>s isolated dur<strong>in</strong>g this study were shown toenantioselectively cleave racemic cyclo(DL-Ala-DL-Ala). We coulddemonstrate that the cyclo(D-Ala-D-Ala) isomer was not attacked by bothstra<strong>in</strong>s which were identified as Microbacterium sp. and Paenibacillus sp.by 16S rDNA sequence analysis.1. M.B. Mart<strong>in</strong>s, I. Carvalho, Tetrahedron63(2007), p. 9923.2. A. Lamm, I. Gozlan, A. Rotste<strong>in</strong>, D. Avisar, J Env Sci Health Part A44(2009), p. 1512.3. T. Ishiyama, J Biochem17(1933), p. 287.4. U. Engel, C. Syldatk, J. Rudat, Appl Microbiol Biotechnol, published onl<strong>in</strong>e Nov 27th, 2011.5. EP 0 220 028 - B1 (1990) AJINOMOTO CO.EMP2-FGEthylbenzene - Isotope fractionation measurements as a tool tocharacterize aerobic and anaerobic biodegradationC. Dorer* 1 , A.J.M. Stams 2 , H.H. Richnow 1 , C. Vogt 11 Helmholtz Centre for Environmental Research - UFZ, Department ofIsotope Biogeochemistry, Leipzig, Germany2 Wagen<strong>in</strong>gen University, Laboratory of Microbiology, Wagen<strong>in</strong>gen,NetherlandsBTEX compounds (benzene, toluene, ethylbenzene and xylenes) arecommon pollutants <strong>in</strong> our environment released from spill<strong>in</strong>gs of gasol<strong>in</strong>e.As hydrocarbons are chemically <strong>in</strong>ert compounds they need to be activatedto start degradation processes. For long time only molecular oxygen ashighly reactive cosubstrate was known to <strong>in</strong>itiate biological decompositionof these compounds. In the last years biochemically completely differentmechanisms for <strong>in</strong>itial attack under anoxic conditions were elucidated.Two of them are relevant for ethylbenzene degradation: fumarate additionand oxygen-<strong>in</strong>dependent hydroxylation. The better we know whichbiodegradation process prevails the better it is possible to make reliablepredictions for remediation measures.Here we present isotope fractionation measurements of carbon andhydrogen as a tool to characterize the biodegradation processes ofethylbenzene and a cheap means for monitor<strong>in</strong>g the transformation atcontam<strong>in</strong>ated sites. Different reaction mechanisms are reflected bydifferent isotope effects (the result of different reaction rates of moleculesconta<strong>in</strong><strong>in</strong>g the light or the heavy isotope). By this way the <strong>in</strong>itial step ofvarious degradation pathways can be differed by determ<strong>in</strong><strong>in</strong>g the s<strong>in</strong>gleand comb<strong>in</strong>ed fractionation behaviour of carbon and hydrogen.Investigated ethylbenzene dehydrogenase catalysed reactions by nitratereduc<strong>in</strong>gtest organisms (Aromatoleum aromaticum, Georgfuchsiatoluolica and Azoarcus sp.) show a pronounced hydrogen fractionationcontrast<strong>in</strong>g to aerobic transformation via hydroxylation of the side-cha<strong>in</strong> orthe r<strong>in</strong>g (<strong>in</strong>vestigated for Pseudomonas putida and an enrichment culturedom<strong>in</strong>ated by an Acidovorax-related species, respecively. Furthermoremask<strong>in</strong>g effects can be excluded by look<strong>in</strong>g at two elements at the sametime.Altogether the newly ga<strong>in</strong>ed isotopic enrichment factors from various labcultures will be useful for application at field sites and will complete thepicture of isotope effects for BTEX compounds.EMP3-FGChloroethenes <strong>in</strong> a historical context: From recalcitrance tocomplete m<strong>in</strong>eralizationS. Mungenast*, I. Kranzioch, I. Kranzioch, K.R. Schmidt, A. TiehmDVGW-Water Technology Center (TZW), Department of EnvironmentalBiotechnology, Karlsruhe, GermanyChloroethenes were identified as common contam<strong>in</strong>ants <strong>in</strong> groundwater asearly as the 1970s (1). Their extensive use as degreas<strong>in</strong>g or dry clean<strong>in</strong>gsolvents and synthetic feed stocks until today has led to groundwatercontam<strong>in</strong>ation world wide. They are <strong>in</strong>cluded <strong>in</strong> the USEPA’s list ofprimary regulated dr<strong>in</strong>k<strong>in</strong>g water contam<strong>in</strong>ants (2), because of their toxicand carc<strong>in</strong>ogenic effects on human health.Common consensus until 1980 was that chlor<strong>in</strong>ated ethenes(Tetrachloroethene (=Perchloroethene, PCE); Trichloroethene (TCE); thethree dichloroethenes isomers (cDCE, tDCE, 1,1DCE) and v<strong>in</strong>yl chloride(VC)) were recalcitrant to biodegradation. This op<strong>in</strong>ion was supported bythe fact that these compounds were thought to be only of anthropogenicorig<strong>in</strong>. In addition to that only little importance was assigned to biologicalprocesses <strong>in</strong> groundwater before the 1980s (1).After several studies on the fate of PCE and TCE <strong>in</strong> anaerobicgroundwater and the accumulation of cDCE or VC as possibletransformation products, it was clear at the end of the 1980s that microbialreductive dechlor<strong>in</strong>ation can take place <strong>in</strong> anaerobic, chloroethenecontam<strong>in</strong>ated aquifers. From that time on researchers all over the worldaddressed biological degradation of chloroethenes under different redoxconditionsand with a wide range of auxiliary substrates. Today thecommon op<strong>in</strong>ion is that chloroethenes with higher chlor<strong>in</strong>e content (PCE,TCE) can be degraded more easily under anaerobic conditions serv<strong>in</strong>g aselectron acceptors and chloroethenes with lower chlor<strong>in</strong>e content (DCE,VC) can be degraded more easily under aerobic conditions serv<strong>in</strong>g aselectron donors (3).Here we want to report recent f<strong>in</strong>d<strong>in</strong>gs on reductive dechlor<strong>in</strong>ation, onaerobic metabolism (cometabolic and productive) of lower chlor<strong>in</strong>atedethenes and on first results <strong>in</strong>dicat<strong>in</strong>g that aerobic productivebiodegradation of TCE is possible.(1) P. M. Bradley, Bioremediation Journal72003, p. 81.(2) Code of Federal Regulations Title 40, Pt.141.50 (2002 ed).(3) A. Tiehm and K. R. Schmidt, Current Op<strong>in</strong>ion <strong>in</strong> Biotechnology22(2011), p. 415.(4) The authors k<strong>in</strong>dly acknowledge f<strong>in</strong>ancial support by BMWi (AiF project no. 16224 N).EMP4-FGSoil microbial communities <strong>in</strong>volved <strong>in</strong> carbon cycl<strong>in</strong>g dur<strong>in</strong>gleaf litter degradation of annual and perennial plantsS. Wallisch* 1,2 , W. Heller 3 , S. Stich 3 , F. Fleischmann 4 , M. Schloter 2,51 Helmholtz Zentrum München, environmental genomics, Oberschleissheim,Germany2 Technische Universitaet Muenchen, Chair of Soil Ecology, Neuherberg,Germany3 HelmholtzZentrum Muenchen – German Research Center for EnvironmentalHealth, Institute of Biochemical Plant Pathology, Research Group of PlantAbiotic Stress, Neuherberg, Germany4 Technische Universität München, Phytopathology of Woody Plants,Freis<strong>in</strong>g, Germany5 HelmholtzZentrum Muenchen, Research Unit Environmental Genomics,Neuherberg, GermanyMicrobial degradation of plant litter materials provides the primaryresources for organic matter formation <strong>in</strong> soil. The aim of this study was toenlighten the role of bacterial colonisation on leaf litter fragments and to<strong>in</strong>vestigate shifts <strong>in</strong> microbial diversity dur<strong>in</strong>g leaf litter degradation <strong>in</strong> thecontext of carbon cycl<strong>in</strong>g.Therefore, we compared two different litter types: (I)Zea maysas annualand (II)Fagus sylvaticaas perennial model plant. Leafs were sewed <strong>in</strong>tonylon bags and <strong>in</strong>cubated for up to eight (Z. mays) and thirty (F. sylvatica)weeks, respectively, <strong>in</strong> the soil. The state of degradation was determ<strong>in</strong>edby the loss of dry weight. For molecular analyses 16S rRNA genes weredetected by two different f<strong>in</strong>gerpr<strong>in</strong>t<strong>in</strong>g techniques, term<strong>in</strong>al restrictionfragment length polymorphism (T-RFLP) and enterobacterial repetitive<strong>in</strong>tergenic consensus sequences (ERIC). To get a deeper <strong>in</strong>sight whichbacterial communities are <strong>in</strong>volved <strong>in</strong> litter degradation next generationsequenc<strong>in</strong>g us<strong>in</strong>g a 454 platform was performed. Additionally, the amountof sugars, am<strong>in</strong>o sugars and phenols was analysed.First results of the experiment with litter of the annual plant showed aconsistent pattern of microbial community shifts. T-RFLP, ERIC andsequenc<strong>in</strong>g results reflected concordantly changes of the bacterialcommunity over time. Summariz<strong>in</strong>g, microbial diversity <strong>in</strong>creased dur<strong>in</strong>gleaf litter degradation and bacterial stra<strong>in</strong>s related to carbon cycl<strong>in</strong>g suchasAct<strong>in</strong>omycetesandMyxococcalescould be identified. Further analyseswill reveal how microbial diversity develops on perennial leaf litter.Different results are expected as the litter ofF. sylvaticaconta<strong>in</strong>s higheramounts of persistent substances as lign<strong>in</strong> and celluloses compared toZeamays.EMP5-FGBenzotriazole derivatives: biodegradation patterns with threedifferent activated sludge biocenosesB. Herzog* 1 , H. Lemmer 2 , H. Horn 1 and E. Müller 11 Institute of Water Quality Control, TU München, Garch<strong>in</strong>g, Germany2 Bavarian Environment Agency, Munich, GermanyThe compounds benzotriazole (BT), 5-methylbenzotriazole (5-TTri) and 4-methylbenzotriazole (4-TTri) are polar micropollutants widely used asBIOspektrum | Tagungsband <strong>2012</strong>

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