174PSV008Physiological effects of disrupt<strong>in</strong>g the acetate and acetoneformation pathways <strong>in</strong> Clostridium acetobutylicumD. Lehmann*, T. Lütke-EverslohInstitute of Biological Sciences/University of Rostock, Division ofMicrobiology, Rostock, GermanyClostridial acetone-butanol-ethanol (ABE) fermentation is a natural sourcefor microbial n-butanol production and rega<strong>in</strong>ed much <strong>in</strong>terest <strong>in</strong> academiaand <strong>in</strong>dustry <strong>in</strong> the past years. Due to the difficult genetic accessibility ofClostridium acetobutylicum and other solventogenic clostridia, successfulmetabolic eng<strong>in</strong>eer<strong>in</strong>g approaches are still rare. In this study, a set of fiveknock-out mutants with defects <strong>in</strong> the central fermentative metabolismwere generated us<strong>in</strong>g the ClosTron technology, <strong>in</strong>clud<strong>in</strong>g the constructionof targeted double knock-out mutants of C. acetobtuylicum ATCC 824.While disruption of the acetate biosynthetic pathway had no significantimpact on the metabolite distribution, mutants with defects <strong>in</strong> the acetonepathway, <strong>in</strong>clud<strong>in</strong>g both acetoacetate decarboxylase- (Adc) andacetoacetyl-CoA:acyl-CoA transferase- (CtfAB) negative mutants,exhibited high amounts of acetate <strong>in</strong> the fermentation broth. Dist<strong>in</strong>ctbutyrate <strong>in</strong>crease and decrease patterns dur<strong>in</strong>g the course of fermentationsprovided experimental evidence that butyrate, but not acetate, is reassimilatedvia an Adc/CtfAB-<strong>in</strong>dependent pathway <strong>in</strong> C. acetobutylicum.Interest<strong>in</strong>gly, comb<strong>in</strong><strong>in</strong>g the adc and ctfA mutations with a knock-out ofthe phosphotransacetylase- (Pta) encod<strong>in</strong>g gene, acetate production wasdrastically reduced, result<strong>in</strong>g <strong>in</strong> an <strong>in</strong>creased flux towards butyrate. Exceptfor the Pta-negative s<strong>in</strong>gle mutant, all mutants exhibited a significantlyreduced solvent production <strong>in</strong> pH-uncontrolled batch fermentations ascompared to the wildtype.PSV0094-Hydroxybutyryl-CoA dehydratase, a radical enzyme <strong>in</strong>metabolic pathways of anaerobic Bacteria and ArchaeaJ. Zhang* 1,2 , P. Friedrich 3 , B.M. Mart<strong>in</strong>s 4 , W. Buckel 1,21 Philipps-Universität, Fachbereich Biologie, Marburg, Germany2 Max-Planck-Institut für terrestrische Mikrobiologie, Marburg, Germany3 University of Newcastle upon Tyne, Chemistry, Newcastle, United K<strong>in</strong>gdom4 Humboldt-Universität zu Berl<strong>in</strong>, Biologie, Berl<strong>in</strong>, Germany4-Hydroxybutyryl-CoA dehydratase (AbfD) was discovered <strong>in</strong> thefermentation of 4-am<strong>in</strong>obutyrate to ammonia, acetate and butyrate <strong>in</strong>Clostridium am<strong>in</strong>obutyricum [1]. Recently, this radical enzyme has beenalso identified <strong>in</strong> two new CO 2 fixation pathways <strong>in</strong> Archaea [2]. The[4Fe-4S] cluster and FAD conta<strong>in</strong><strong>in</strong>g AbfD catalyzes the oxygen sensitiveand chemical difficult dehydration of 4-hydroxybutyryl-CoA to crotonyl-CoA, s<strong>in</strong>ce the unactivated -proton has to be removed (pK ~ 40). Thesuccessful production of variants of recomb<strong>in</strong>ant AbfD <strong>in</strong> Escherichia colidemonstrated that all highly conserved am<strong>in</strong>o acids around the activecenter are essential for activity. Surpris<strong>in</strong>gly, the low residual activity ofthe Y296F variant (
175PSV013Localization and regulation of PHB granules <strong>in</strong> Synechocystissp. PCC 6803M. Schlebusch*, W. Hauf, K. ForchhammerUniversity of Tüb<strong>in</strong>gen, Institute of Microbiology and Infection Medic<strong>in</strong>e ,Tüb<strong>in</strong>gen, GermanyPolyhydroxyalkanoates (PHA) are organic polyesters composed of (R)-3-hydroxy fatty acids which are synthesized by many bacteria as a carbonand energy storage material under unbalanced nutrient and energyavailability. PHAs are deposited <strong>in</strong>tracellularly as <strong>in</strong>soluble spherical<strong>in</strong>clusion called PHA granules, which consist of a polyester coresurrounded by a phospholipid layer with attached prote<strong>in</strong>s. One of theseprote<strong>in</strong>s is the PHA synthase, the key enzyme of PHA biosynthesis, whichcatalyses the formation from (R)-3-hydroxyacyl-CoA precursors. Onlylittle is known about the regulation and biogenesis of PHA accumulation <strong>in</strong>cyanobacteria. We <strong>in</strong>vestigate the granule self-assembly process, thefunction of granule-associated prote<strong>in</strong>s and the regulation of the PHBaccumulation <strong>in</strong> Synechocytis PCC 6803. We applied differentfluorescence dyes, as well as GFP-PHA synthase fusion prote<strong>in</strong>s to studythe early PHA granule formation. With these tools we <strong>in</strong>vestigate, whetherthis process is located at the cytoplasmatic membrane. We analyzed theproteome of purified PHA granules and identified new putative granuleassociatedprote<strong>in</strong>s. To ga<strong>in</strong> <strong>in</strong>sight <strong>in</strong>to the regulation of PHA synthesis,we <strong>in</strong>vestigate mutants, which are impaired <strong>in</strong> PHA accumulation. Herewe show that the NADPH pool is crucial for the PHA accumulation.PSV014Biosynthesis of (Bacterio)chlorophylls: ATP-DependentTransient Subunit Interaction and Electron Transfer of DarkoperativeProtochlorophyllide OxidoreductaseJ. Moser* 1 , C. Lange 1 , M. Bröcker 1 , M. Saggu 2 , F. Lendzian 2 , H. Scheer 3 ,D. Jahn 11 Technische Universität Braunschweig, Inst. f. Mikrobiologie, Braunschweig,Germany2 Technische Universität Berl<strong>in</strong>, Inst. f. Chemie, Berl<strong>in</strong>, Germany3 Ludwig-Maximilians-Universität München, Biologie 1, München, GermanyThe biosynthesis of (bacterio)chlorophylls is fundamental for the primaryproduction on earth. Reduction of the fully conjugated r<strong>in</strong>g system ofprotochlorophyllide results <strong>in</strong> the common core r<strong>in</strong>g architecture which ischaracteristic for all (bacterio)chlorophylls. Dark-operativeprotochlorophyllide oxidoreductase (DPOR) is a multi-subunit enzymeemploy<strong>in</strong>g nitrogenase-like catalysis for the chemically difficult twoelectron reduction of r<strong>in</strong>g D.Dur<strong>in</strong>g ATP-dependent DPOR catalysis the homodimeric ChlL 2 subunitcarry<strong>in</strong>g a [4Fe-4S] cluster, transfers electrons to the correspond<strong>in</strong>gheterotetrameric catalytic subunit (ChlN/ChlB) 2 which also possesses aredox active [4Fe-4S] cluster. To <strong>in</strong>vestigate the transient <strong>in</strong>teraction ofboth subcomplexes and the result<strong>in</strong>g electron transfer reactions, the ternaryDPOR enzyme holocomplex compris<strong>in</strong>g subunits ChlN, ChlB and ChlLwas trapped as an octameric (ChlN/ChlB) 2(ChlL 2) 2 complex after<strong>in</strong>cubation with non hydrolyzable ATP analogs. A nucleotide-dependentswitch mechanism trigger<strong>in</strong>g ternary complex formation and electrontransfer was concluded.The crystal structure of the catalytic (ChlN/ChlB) 2 complex of DPOR fromthe cyanobacterium Thermosynechococcus elongatus was solved at aresolution of 2.4 Å. Subunits ChlN and ChlB exhibit a related architectureof three subdoma<strong>in</strong>s built around a central, parallel ß-sheet surrounded by-helices. The (ChlN/ChlB) 2 prote<strong>in</strong> revealed a [4Fe-4S] clustercoord<strong>in</strong>ated by an oxygen atom of an aspartate residue alongside threecommon cyste<strong>in</strong>e ligands. Two substrate b<strong>in</strong>d<strong>in</strong>g sites enriched witharomatic residues for coord<strong>in</strong>ation of the protochlorophyllide substratemolecules are located at the <strong>in</strong>terface of each ChlN/ChlB half-tetramer.The complete octameric (ChlN/ChlB) 2(ChlL 2) 2 complex of DPOR wasmodeled based on the obta<strong>in</strong>ed structure and earlier functional studies. Theelectron transfer pathway via the various redox centers of DPOR to thesubstrate was reconstructed.Bröcker, M. J., Schomburg, S., He<strong>in</strong>z, D. W., Jahn, D., Schubert, W. D., and Moser, J. (2010).Crystal structure of the nitrogenase-like dark operative protochlorophyllide oxidoreductase catalyticcomplex (ChlN/ChlB)2. J. Biol. Chem.285, 27336-27345.Wätzlich, D., Bröcker, M., Uliczka, F., Ribbe, M., Virus, S.; Jahn, D. & Moser, J. (2009). ChimericNitrogenase-like Enzymes of (Bacterio)Chlorophyll Biosynthesis.J. Biol. Chem.284:15530-40.Bröcker, M.J.; Virus, S.; Ganskow, S.; Heathcote, P.; He<strong>in</strong>z, D.W.; Schubert, W-D.; Jahn, D. &Moser, J. (2008). ATP-Driven Reduction by Dark-Operative Protochlorophyllide OxidoreductasefromChlorobium tepidumMechanistically Resembles Nitrogenase Catalysis.J. Biol.Chem.283:10559-67.PSV015Carbon disulfide hydrolase: a new enzyme for CS 2 conversion<strong>in</strong> acidothermophilic microorganismsM. Jetten* 1 , M. Smeulders 1 , H. Op den Camp 1 , T. Barends 2 , I. Schlicht<strong>in</strong>g 21 Radboud University Nijmegen, Microbiology, Nijmegen, Netherlands2 MPI Heidelberg, Heidelberg, GermanyAcidophilic, thermophilic Archaea that live <strong>in</strong> mudpots of volcaniceocsystems obta<strong>in</strong> their energy from the oxidation of sulfur compoundssuch as carbon disulfide and hydrogen sulfide, thereby creat<strong>in</strong>g anextremely acidic environment with pH values as low as 1. Ahyperthermophilic Acidianus stra<strong>in</strong> A1-3 was isolated from the fumarolic,ancient sauna build<strong>in</strong>g at the Solfatara volcano (Naples, Italy). It wasshown to rapidly convert CS 2 <strong>in</strong>to H 2S and carbon dioxide (CO 2), but sofar little was known about the modes of action and the evolution of theenzyme(s) <strong>in</strong>volved. In this study we elucidated the structure, the proposedmechanism and evolution of the isolated CS 2 hydrolase from AcidianusA1-3. The enzyme monomer displayed a typical b-carbonic anhydrase foldand active site, yet CO 2 was not one of the typical substrates. Largecarboxy- and am<strong>in</strong>o-term<strong>in</strong>al arm extensions, and an unusualhexadecameric catenane oligomer were apparent <strong>in</strong> the enzyme. Thesestructure features resulted <strong>in</strong> the block<strong>in</strong>g of the usual entrance to carbonicanhydrase active sites, and the formation of a s<strong>in</strong>gle 1,5 nm long, highlyhydrophobic tunnel that functions as a specificity filter. The tunneldeterm<strong>in</strong>es the enzyme's substrate specificity for CS 2. The transposonsequences that surround the gene encod<strong>in</strong>g this CS 2 hydrolase po<strong>in</strong>t tohorizontal gene transfer as a mechanism for its acquisition dur<strong>in</strong>gevolution. Our results show how the ancient b-carbonic anhydrase, whichis central to global carbon metabolism, was transformed by divergentevolution <strong>in</strong>to a crucial enzyme <strong>in</strong> CS 2 metabolism.Smeulders MJ, Barends T, et al (2011) Evolution of a new enzyme for carbon disulphideconversion by an acidothermophilic archaeon. Nature 478(7369):412-416 doi:10.1038/nature10464PSV016A promiscuous archaeal ATP synthase concurrently coupledto Na + and H + translocationK. Schlegel* 1 , V. Leone 2 , J. Faraldo-Gómez 2 , V. Müller 11 Molecular Microbiology & Bioenergetics, Institute for MolecularBiosciences, Goethe University, Frankfurt/Ma<strong>in</strong>, Germany, Germany2 Theoretical Molecular Biophysics Group, Max Planck Institute ofBiophysics, Frankfurt/Ma<strong>in</strong>, Germany, GermanyCytochrome-conta<strong>in</strong><strong>in</strong>g methanogenic archaea are one of the very feworganisms that generate a primary proton- as well as a primary sodium iongradient dur<strong>in</strong>g their metabolism (1). Thus, the critical question is howboth ion gradients are used for the synthesis of ATP. S<strong>in</strong>ce only one ATPsynthase (A 1A O type) is expressed, the enzyme may use both ions ascoupl<strong>in</strong>g ion, or the sodium ion gradient is converted to a secondary protongradient via Na + /H + antiporter or vice versa (2). We have addressed thislong stand<strong>in</strong>g question us<strong>in</strong>g energetically <strong>in</strong>tact <strong>in</strong>side out membranevesicles of Methanosarc<strong>in</strong>a acetivorans. Our results show that the A 1A OATP synthase translocates both ions, H + and Na + , simultaneously underphysiological conditions. To further elucidate this phenomenon, we usedfree-energy molecular simulations to analyse the ion-selectivity of the ionb<strong>in</strong>d<strong>in</strong>gsite of the subunit c. This appears to have been tuned via am<strong>in</strong>oacidsubstitutions allow<strong>in</strong>g the usage of H + and Na + under physiologicalconditions. The adaptation of the b<strong>in</strong>d<strong>in</strong>g site could be an adaptation to usethe heterogeneous ion gradient established dur<strong>in</strong>g methanogensis.1. Deppenmeier U, & Müller V (2008) Life close to the thermodynamic limit: how methanogenicarchaea conserve energy. Results Probl. Cell. Differ.45: 123-152.2. Pisa KY, Weidner C, Maischak H, Kavermann H, & Müller V (2007) The coupl<strong>in</strong>g ion <strong>in</strong>methanoarchaeal ATP synthases: H + versus Na + <strong>in</strong> the A1AO ATP synthase from the archaeonMethanosarc<strong>in</strong>a mazei Gö1. FEMS Microbiol. Lett.277:56-63.PSP001A tool for onl<strong>in</strong>e measurement of the <strong>in</strong>tracellular pH <strong>in</strong>Corynebacterium glutamicumK.M. Kirsch*, S. Mayr, R. Krämer, K. Mar<strong>in</strong>Universität Köln, Institut für Biochemie, Köln, GermanyThe soil bacterium C. glutamicum is a well established organism for<strong>in</strong>dustrial am<strong>in</strong>o acid production. In its natural habitat as well as dur<strong>in</strong>glarge scale fermentation, C. glutamicum is exposed to significant changesof the external pH. The limited mix<strong>in</strong>g capacity, pH regulation by additionof acids or NH 3 as well as elevated CO 2 concentrations at high celldensities contribute to transient fluctuations of the external pH. It isconsidered that most bacteria perform efficient pH homeostasis <strong>in</strong> order toma<strong>in</strong>ta<strong>in</strong> the structural and functional <strong>in</strong>tegrity of cellular macromoleculesbut, it is unknown for almost all bacteria to what extent the <strong>in</strong>ternal pH canvary and how fast the adjustment of the <strong>in</strong>ternal pH is achieved uponexternal shifts. Additionally, the major players of pH regulation and theenergetic costs of pH homeostasis are unknown, although their impact onthe efficiency of production processes seems to be obvious. In order toaddress these questions we established a method for onl<strong>in</strong>e measurementBIOspektrum | Tagungsband <strong>2012</strong>
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General Information2012 Annual Conf
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SPONSORS & EXHIBITORS9Sponsoren und
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13BIOspektrum | Tagungsband 2012
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16 AUS DEN FACHGRUPPEN DER VAAMFach
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22 AUS DEN FACHGRUPPEN DER VAAMMitg
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24 INSTITUTSPORTRAITin the differen
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26 INSTITUTSPORTRAITProf. Dr. Lutz
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28 CONFERENCE PROGRAMME | OVERVIEWS
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30 CONFERENCE PROGRAMME | OVERVIEWT
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42 SHORT LECTURESMonday, March 19,
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48 SHORT LECTURESWednesday, March 2
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52ISV01Die verborgene Welt der Bakt
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54protein is reversibly uridylylate
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56that this trapping depends on the
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58Here, multiple parameters were an
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60BDP016The paryphoplasm of Plancto
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62of A-PG was found responsible for
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64CEV012Synthetic analysis of the a
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66CEP004Investigation on the subcel
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68CEP013Role of RodA in Staphylococ
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70MurNAc-L-Ala-D-Glu-LL-Dap-D-Ala-D
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72CEP032Yeast mitochondria as a mod
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74as health problem due to the alle
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76[3]. In summary, hypoxia has a st
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78This different behavior challenge
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80FUP008Asc1p’s role in MAP-kinas
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82FUP018FbFP as an Oxygen-Independe
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84defence enzymes, were found to be
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86DNA was extracted and shotgun seq
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88laboratory conditions the non-car
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90MEV003Biosynthesis of class III l
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92provide an insight into the regul
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94MEP007Identification and toxigeni
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96various carotenoids instead of de
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98MEP025Regulation of pristinamycin
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100that the genes for AOH polyketid
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102Knoll, C., du Toit, M., Schnell,
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104pathogenicity of NDM- and non-ND
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106MPV013Bartonella henselae adhesi
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108Yfi regulatory system. YfiBNR is
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110identification of Staphylococcus
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112that a unit increase in water te
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114MPP020Induction of the NF-kb sig
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116[3] Liu, C. et al., 2010. Adhesi
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118virulence provides novel targets
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120proteins are excreted. On the co
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122MPP054BopC is a type III secreti
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- Page 142 and 143: 142bacteria in situ, we used 16S rR
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224SMP044RNase J and RNase E in Sin
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226labelled hydrocarbons or potenti
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228SSV009Mathematical modelling of
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230SSP006Initial proteome analysis
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232nine putative PHB depolymerases
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234[1991]. We were able to demonstr
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236of these proteins are putative m
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238YEV2-FGMechanistic insight into
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240 AUTORENAbdel-Mageed, W.Achstett
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242 AUTORENFarajkhah, H.HMP002Faral
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244 AUTORENJung, Kr.Jung, P.Junge,
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246 AUTORENNajafi, F.MEP007Naji, S.
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249van Dijk, G.van Engelen, E.van H
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251Eckhard Boles von der Universit
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253Anna-Katharina Wagner: Regulatio
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255Vera Bockemühl: Produktioneiner
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257Meike Ammon: Analyse der subzell
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springer-spektrum.deDas große neue