Windows QTL Cartographer 2.5 - FTP Directory Listing

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18 Windows QTL Cartographer 2.5 From top to bottom, here's what you see: 1. Title bar. Shows the name of the selected results data file. You can have multiple results files loaded and multiple Graph windows open at a time. 2. Menu bar 12 3. Toolbar with one-click access to the program's major functions. Hover the pointer over a button to see a brief description of that command. 4. The large graph charts the data as a LOD (or LR) score profile. The higher the LOD, the greater the evidence for a QTL. 5. The smaller graph at the bottom is the QTL effects window, showing additive or dominant effects or R2 or TR2 or S values. Graph window tips You can add several result files so they display at the same time on the current graph. You might want to run your data through the IM, CIM, and MIM analysis methods, for example, and then pull them all into the same graph to see how they compare. Peaks above the threshold line indicate a QTL. A high LOD value on the graph indicates a good QTL candidate. Right-click on the graph to see appropriate commands. (Commands described in the Graph window- Menus 12 topic.) You can minimize the Graph window to the bottom of the Main window; a small bit of the title bar is visible. You can have the same result file open in several windows at the same time. This might be useful if you're testing various viewing parameters. To do this, minimize the current Graph window, go back to the Main window, ensure the result file is still active, and click the Graph toolbar button. © 2010 N.C. State University, Bioinformatics Research Center
Related topics Graph Window - Menus 12 Tracing coordinates on the graph 19 Selecting traits for graph display 20 Selecting chromosomes for graph display Setting display parameters Setting a test hypothesis Showing QTL information Tracing coordinates on the graph © 2010 N.C. State University, Bioinformatics Research Center WinQTLCart Windows & Menus 19 Select Settings>Trace Coordinate in Graphic or click . As you move the cursor around the screen, note that the graph coordinates are displayed in the graph's upper right corner. Double-click a point on the graph; WinQTLCart marks that point with a dot and displays the coordinates. Take the following coordinates as an example: 23 24 21 (1, 46.7, 3.0) 1=the chromosome number 21
Page 1 and 2: Windows QTL Cartographer 2.5 User M
Page 3 and 4: Contents WinQTLCart Procedures 25 S
Page 5 and 6: About Windows QTL Cartographer WinQ
Page 7 and 8: These are all text files that you c
Page 9 and 10: © 2010 N.C. State University, Bioi
Page 11 and 12: Main window - Menus - Help Icon Com
Page 13 and 14: Main window tour © 2010 N.C. State
Page 15 and 16: Tree Item Action Function © 2010 N
Page 17 and 18: Graph window - Menus - File Command
Page 19 and 20: Graph window - Menus - Tools Comman
Page 21: Row Number> Increase graph number i
Page 25 and 26: Selecting chromosomes for graph dis
Page 29 and 30: Related topics Creating simulation
Page 33 and 34: Note: © 2010 N.C. State University
Page 35 and 36: C. MCD file (only selected traits a
Page 37 and 38: Changing a cell's contents © 2010
Page 41 and 42: Working with source file's chromoso
Page 43 and 44: Working with source file's other tr
Page 49 and 50: Fill in the dialog based on your so
Page 53 and 54: First to specify raw data file's nu
Page 65 and 66: 3. Click Result File… to select t
Page 67 and 68: 6. Select one or all chromosomes to
Page 69 and 70: Epistasis. Number of epistatic gene
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© 2010 N.C. State University, Bioi
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file with Windows notepad. © 2010
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Tutorials A chromosome graphic befo
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Create new source data file © 2010
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Credits & acknowledgements © 2010
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QTL Cartographer 1, 4 export format
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