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Windows QTL Cartographer 2.5 - FTP Directory Listing

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About <strong>Windows</strong> <strong>QTL</strong> <strong>Cartographer</strong><br />

Win<strong>QTL</strong>Cart features<br />

© 2010 N.C. State University, Bioinformatics Research Center<br />

About <strong>Windows</strong> <strong>QTL</strong> <strong>Cartographer</strong> 1<br />

<strong>Windows</strong> <strong>QTL</strong> <strong>Cartographer</strong> maps quantitative trait loci (<strong>QTL</strong>) in cross populations from inbred lines.<br />

Win<strong>QTL</strong>Cart includes a powerful graphic tool for presenting mapping results and can import and export<br />

data in a variety of formats.<br />

Win<strong>QTL</strong>Cart incorporates many of the modules found in its command-line sibling, <strong>QTL</strong> <strong>Cartographer</strong>, and<br />

provides a graphical interface to many of <strong>QTL</strong> <strong>Cartographer</strong>'s features.<br />

Win<strong>QTL</strong>Cart implements the following statistical methods:<br />

Single-marker analysis 55<br />

Interval mapping 58<br />

Composite interval mapping 60<br />

Bayesian interval mapping 76<br />

Multiple interval mapping 63<br />

Multiple trait analysis 78<br />

Multiple trait MIM analysis 78<br />

Features<br />

Supports various <strong>QTL</strong> mapping methods<br />

View, copy, and print graphs<br />

Includes an interface to help you build a source data file that Win<strong>QTL</strong>Cart can use for analysis<br />

Import 25 data from Mapmaker / <strong>QTL</strong> and Microsoft Excel and CSV formats<br />

Export 29 graph data to <strong>Windows</strong> Excel format<br />

View, copy, and print chromosome information 78 graphically<br />

Produce a simulation 51<br />

data file<br />

Compatible programs and formats<br />

Win<strong>QTL</strong>Cart can import and export data files in a variety of formats.<br />

Import success depends on the data file's format. Some data may need to be formatted manually before<br />

Win<strong>QTL</strong>Cart can import it.<br />

Applications Formats Supported Import Export<br />

MapMaker/<strong>QTL</strong> .MAP – Map file<br />

.MPS – Map file<br />

.RAW – Cross data file<br />

Microsoft Excel .XLS X X<br />

Microsoft CSV .CSV X<br />

<strong>QTL</strong> <strong>Cartographer</strong> .INP – Map and Cross data files<br />

.MAP – Map file<br />

.CRO – Cross data file<br />

X<br />

X X<br />

Win<strong>QTL</strong>Cart .MCD – Source data file X X

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