Windows QTL Cartographer 2.5 - FTP Directory Listing

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Windows QTL Cartographer 2.5
Fill in the blanks for yourself, or accept the defaults.
Random seed. Click the button to generate a new random seed.
Replications. Produce a file with many replications of simulation data with the same parameter setting.
The filename look like ***SimuRep-1.dat and the ***.mcd is the simulation .MCD file.
Sample size. Individual number.
Map function. Haldane (assumes no crossover interference) or Kosambi (assumes some crossover
interference).
Total Trait. Indicate how many traits in the simulation data.
Current Trait. You can change the current trait and set parameter of Trait mean.
Cross Information. Select an experimental design option. You can select only one option to modify at a
time. (At this time, only the three options below are available for selection.)
B1. Backcross, with 1=parental line to which the F1 line was crossed.
B2. Backcross, with 2=parental line to which the F1 line was crossed.
SF2. Selfed intercross line, generation 2.
Translation table. Edit or add tokens you want to use for these genotype markers; you can enter any
alphanumeric character(s) as a token.
Note WinQTLCart assumes that the A allele is diagnostic for the High (parental 1) line and the a
allele is diagnostic for the Low (parental 2) line. A minus sign (-) means the allele is unknown.
© 2010 N.C. State University, Bioinformatics Research Center