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Windows QTL Cartographer 2.5 - FTP Directory Listing

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© 2010 N.C. State University, Bioinformatics Research Center<br />

Win<strong>QTL</strong>Cart Procedures 69<br />

9. Click the Criterion button. The Set Threshold dialog appears. Enter a threshold value or click<br />

Default to accept the default value (recommended). Click OK to accept the value and close the<br />

dialog and return to the Create New MIM dialog.<br />

10. Click the Start button to begin the search. The CIM form may display during the calculations.<br />

When the search is complete, the model is presented in the cells.<br />

11. To manually edit the model:<br />

Click Add <strong>QTL</strong> or Del <strong>QTL</strong><br />

Click on a cell and enter a new value in the Cell editing box. Click the Cell Update button<br />

to enter the new value.<br />

12. Click OK to accept the parameters, close the dialog and return to the MIM form.<br />

If you selected Set control markers manually in step 2, then Win<strong>QTL</strong>Cart will display the Select CIM<br />

Control Markers dialog box. Enter or edit the marker numbers you want to using the text box; separate<br />

each number with a space. Click on the marker row's cells to toggle their display in the text box.<br />

Where to go from here<br />

From here, you can refine the MIM model 70 , manually edit the model by clicking the Add <strong>QTL</strong> and Del<br />

<strong>QTL</strong> buttons, or click in the model field to change the value of Position, Chromosome, Additive, or<br />

epistatic values. Click Save Model… to save the model as a .MDS file.<br />

Related topics<br />

About the MIM form 63<br />

Refining the MIM model<br />

MIM search option<br />

70<br />

1. At the Select Parameters dialog, select a model selection criteria from the drop down list:<br />

BIC-M0 ---> c(n) = ln(n)

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