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Functional Genomics <strong>of</strong> <strong>Stress</strong> Tolerance 327 Dolan, P.L., Wu, Y., Ista, L.K., Metzenberg, R.L., Nelson, M.A. <strong>and</strong> Lopez, G.P. (2001). Robust <strong>and</strong> efficient synthetic method for forming DNA microarrays. Nucleic Acids Res,. 29, e107. Dong, Q., Roy, L., Freeling, M., Walbot, V. <strong>and</strong> Brendel, V. (2003). ZmDB, an integrated database for maize genome research. Nucleic Acids Res., 31, 244-247 Donson, J., Fang, Y., Espiritu-Santo, G., Xing, W., Salazar, A., Miyamoto, S., et al. (2002). Comprehensive gene expression analysis by transcript pr<strong>of</strong>iling. Plant Mol. Biol., 48, 75-97. Duggan, D.J., Bittner, M., Chen, Y., Meltzer, P. <strong>and</strong> Trent, J.M. (1999). Expression pr<strong>of</strong>iling using cDNA microarrays. Nat. Genet., 21, 10-14. Ewing, R., Poirot, O. <strong>and</strong> Claverie, J.M. (1999). Comparative analysis <strong>of</strong> the Arabidopsis <strong>and</strong> rice expressed sequence tag (EST) sets. In Silico Biol., 1, 197-213. Fields, S. <strong>and</strong> Song, O.K. (1989). A novel genetic system to detect protein-protein interactions. Nature 340, 245-246. Fodor, S.P.A., Read, J.L., Pirrung, M.C., Stryr, L., Lu, A.T. <strong>and</strong> Solas, D. (1991). Light-directed, spatially addressable parallel chemical synthesis. Science, 251, 767-773. Frick, U.B. <strong>and</strong> Schaller, A. (2002). cDNA microarray analysis <strong>of</strong> fusicoccin-induced changes in gene expression in tomato plants. Planta, 216, 83-94. Garcia-Hern<strong>and</strong>ez, M., Berardini, T.Z., Chen, G., Crist, D., Doyle, A., Huala, E., et al. (2002). TAIR: a resource for integrated Arabidopsis data. Funct. Integr. Genomics, 2, 239-253. Gibbings, J.G., Cook, B.P., Dufault, M.R., Madden, S.L., Khuri, S., Turnbull, C.J., et al. (2003). Global transcript analysis <strong>of</strong> rice leaf <strong>and</strong> seed using SAGE technology. Plant Biotechnology Journal, 1, 271-285. G<strong>of</strong>f, S.A., Ricke, D., Lan, T.H., Presting, G., Wang, R., Dunn, M., et al. (2002). A draft sequence <strong>of</strong> the rice genome (Oryza sativa L. ssp. japonica). Science, 296, 92-100. Gu, R., Fonseca, S., Puskas, L.G., Hackler, L., Jr., Zvara, A., Dudits, D., et al. (2004). Transcript identification <strong>and</strong> pr<strong>of</strong>iling during salt stress <strong>and</strong> recovery <strong>of</strong> Populus euphratica. Tree Physiol., 24, 265-276. Gunnersen, J.M., Augustine, C., Spirkoska, V., Kim, M., Brown, M. <strong>and</strong> Tan, S.S. (2002). Global analysis <strong>of</strong> gene expression patterns in developing mouse neocortex using serial analysis <strong>of</strong> gene expression. Mol. Cell Neurosci., 19, 560-573. Haralampidis, K., Milioni, D., Rigas, S. <strong>and</strong> Hatzopoulos, P. (2002). Combinatorial interaction <strong>of</strong> cis elements specifies the expression <strong>of</strong> the Arabidopsis AtHsp90-1 gene. Plant Physiol., 129, 1138-1149. Harushima, Y., Yano, M., Shomura, A., Sato, M., Shimano, T., Kuboki, Y., et al. (1998). A highdensity rice genetic linkage map with 2275 markers using a single F2 population. Genetics, 148, 479-494. Henzel, W.J., Billeci, T.M., Stults, J.T., Wong, S.C., Grimley, C. <strong>and</strong> Watanabe, C. (1993). Identifying proteins from two-dimensional gels by molecular mass searching <strong>of</strong> peptide fragments in protein sequence databases. Proc. Natl. Acad. Sci. U S A, 90, 5011-5015. Hilson, P., Small, I. <strong>and</strong> Kuiper, M.T. (2003). European consortia building integrated resources for Arabidopsis functional genomics. Curr. Opin. Plant Biol., 6, 426-429. Hirochika, H. (2001). Contribution <strong>of</strong> the Tos17 retrotransposon to rice functional genomics. Curr. Opin. Plant Biol., 4, 118-122. Hirochika, H., Guiderdoni, E., An, G., Hsing, Y-I., Eun, M.Y., Han, C-D., et al. (2004). Rice mutant resources for gene discovery. Plant Mol. Biol., 54, 325-334. Holtorf, H., Guitton, M.C. <strong>and</strong> Reski, R. (2002). Plant functional genomics. Naturwissenschaften, 89, 235-249. Huckelhoven, R., Dechert, C. <strong>and</strong> Kogel, K.H. (2003). Overexpression <strong>of</strong> barley BAX inhibitor 1 induces breakdown <strong>of</strong> mlo-mediated penetration resistance to Blumeria graminis. Proc. Natl. Acad. Sci. U S A, 100, 5555-5560. Hugot, K., Riviere, M.P., Moreilhon, C., Dayem, M.A., Cozzitorto, J., Arbiol, G., et al. (2004). Coordinated regulation <strong>of</strong> genes for secretion in tobacco at late developmental stages: association with resistance against oomycetes. Plant Physiol., 134, 858-870. Ishitani, M., Xiong, L., Lee, H., Stevenson, B. <strong>and</strong> Zhu, J.K. (1998). HOS1, a genetic locus involved
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PHYSIOLOGY AND MOLECULAR BIOLOGY OF
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A C.I.P. Catalogue record for this
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About the Editors K.V. Madhava Rao
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LIST OF CONTRIBUTORS K. AKASHI Grad
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List of Contributors xiii NAVINDER
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PREFACE Increasing agricultural pro
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2 K.V. Madhava Rao Abiotic stresses
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4 K.V. Madhava Rao SOME O THE PROMI
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6 K.V. Madhava Rao 2. WATER STRESS
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8 K.V. Madhava Rao 5. FREEZING STRE
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10 K.V. Madhava Rao of these pathwa
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12 K.V. Madhava Rao Bray, E.A. (199
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14 K.V. Madhava Rao Rao, K.V. Madha
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16 A. Yokota, K. Takahara and K. Ak
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18 A. Yokota, K. Takahara and K. Ak
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20 A. Yokota, K. Takahara and K. Ak
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22 A. Yokota, K. Takahara and K. Ak
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24 A. Yokota, K. Takahara and K. Ak
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26 A. Yokota, K. Takahara and K. Ak
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28 A. Yokota, K. Takahara and K. Ak
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30 A. Yokota, K. Takahara and K. Ak
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32 A. Yokota, K. Takahara and K. Ak
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34 A. Yokota, K. Takahara and K. Ak
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36 A. Yokota, K. Takahara and K. Ak
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38 A. Yokota, K. Takahara and K. Ak
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41 CHAPTER 3 SALT STRESS ZORA DAJIC
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Salt Stress 43 activities (mainly i
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Salt Stress 45 In summary, mechanis
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Salt Stress 47 tolerance research i
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Salt Stress 49 need to rely on sodi
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Salt Stress 51 (Echeverria, 2000).
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Salt Stress 53 Therefore, the capac
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Salt Stress 55 Reduced plant growth
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Salt Stress 57 Table 3. Salt tolera
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Salt Stress 59 6.2. Nitrogen Fixati
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Salt Stress 61 A significant number
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Salt Stress 63 macromolecules, irre
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Salt Stress 65 8.2. Ion Homeostasis
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Salt Stress 67 1997), is speculated
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Salt Stress 69 together with the At
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Salt Stress 71 important role in si
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Salt Stress 73 Figure 5. Determinan
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Salt Stress 75 9.1.Transgenic Plant
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Salt Stress 77 tolerance from halop
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Salt Stress 79 sponse and yield (Su
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Salt Stress 81 Table 5. Possible ut
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Salt Stress 83 monitored with fluor
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Salt Stress 85 Func. Plant Biol. 29
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Salt Stress 87 Dajic, Z., Stevanovi
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Salt Stress 89 Gouia, H., Ghorbal,
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Salt Stress 91 Larcher, W. (1995).
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Salt Stress 93 Munns, R. and James,
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Salt Stress 95 Rausell, A., Kanhono
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Salt Stress 97 durum wheat crops gr
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Salt Stress 99 Yoshida, K. (2002).
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102 T.D. Sharkey and S.M. Schrader
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104 T.D. Sharkey and S.M. Schrader
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106 T.D. Sharkey and S.M. Schrader
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108 T.D. Sharkey and S.M. Schrader
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110 T.D. Sharkey and S.M. Schrader
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112 T.D. Sharkey and S.M. Schrader
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114 T.D. Sharkey and S.M. Schrader
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116 T.D. Sharkey and S.M. Schrader
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118 T.D. Sharkey and S.M. Schrader
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120 T.D. Sharkey and S.M. Schrader
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122 T.D. Sharkey and S.M. Schrader
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124 T.D. Sharkey and S.M. Schrader
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126 T.D. Sharkey and S.M. Schrader
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128 T.D. Sharkey and S.M. Schrader
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131 CHAPTER 5 FREEZING STRESS: SYST
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Freezing Stress 133 Whereas, in the
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Freezing Stress 135 genes at the tr
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Freezing Stress 137 with physiologi
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Freezing Stress 139 (1997). However
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Freezing Stress 141 (Barnett et al.
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Freezing Stress 143 (dehydrin) prot
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Freezing Stress 145 in cytosolic Ca
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Freezing Stress 147 Phospholiphase
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Freezing Stress 149 Accumulation of
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Freezing Stress 151 Ideker, T., Gal
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Freezing Stress 153 ellin acid on f
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Freezing Stress 155 Yoshida, S. and
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158 A.R. Reddy and A.S. Raghavendra
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160 A.R. Reddy and A.S. Raghavendra
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162 A.R. Reddy and A.S. Raghavendra
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164 A.R. Reddy and A.S. Raghavendra
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166 A.R. Reddy and A.S. Raghavendra
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168 A.R. Reddy and A.S. Raghavendra
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170 A.R. Reddy and A.S. Raghavendra
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172 A.R. Reddy and A.S. Raghavendra
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174 A.R. Reddy and A.S. Raghavendra
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176 A.R. Reddy and A.S. Raghavendra
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178 A.R. Reddy and A.S. Raghavendra
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180 A.R. Reddy and A.S. Raghavendra
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182 A.R. Reddy and A.S. Raghavendra
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184 A.R. Reddy and A.S. Raghavendra
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186 A.R. Reddy and A.S. Raghavendra
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188 K. Janardhan Reddy constitution
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190 K. Janardhan Reddy World nitrog
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192 K. Janardhan Reddy nitrogen def
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194 K. Janardhan Reddy endoplasmic
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196 K. Janardhan Reddy drought cond
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198 K. Janardhan Reddy Manganese-de
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200 K. Janardhan Reddy zinc deficie
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202 K. Janardhan Reddy Table 12 . E
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204 K. Janardhan Reddy Table 14. Ef
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206 K. Janardhan Reddy Table 15. Th
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208 K. Janardhan Reddy Table 17. Co
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210 K. Janardhan Reddy 18. MOLECULA
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212 K. Janardhan Reddy Bush, D.S.,
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214 K. Janardhan Reddy and Cobbett,
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216 K. Janardhan Reddy 143, 109-111
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219 CHAPTER 8 HEAVY METAL STRESS KS
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Heavy Metal Stress 221 porter) and
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Heavy Metal Stress 223 Figure 1. Su
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Heavy Metal Stress 225 is enzymatic
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Heavy Metal Stress 227 BjPCS1 was e
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Heavy Metal Stress 229 following: (
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Heavy Metal Stress 231 a precursor
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Heavy Metal Stress 233 notype. Incr
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Table 1. Proposed specificity and l
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Heavy Metal Stress 237 4.2. Chapero
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Heavy Metal Stress 239 of prokaryot
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Heavy Metal Stress 241 5. HYPERACCU
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Table 2. Genes introduced into plan
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Heavy Metal Stress 245 7. CONCLUSIO
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Heavy Metal Stress 247 controlled b
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Heavy Metal Stress 249 Kägi, J.H.R
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Heavy Metal Stress 251 Murphy, A.,
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Heavy Metal Stress 253 through xyle
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255 CHAPTER 9 METABOLIC ENGINEERING
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Metabolic Engineering for Stress To
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Metabolic Engineering for Stress To
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Metabolic Engineering for Stress To
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Metabolic Engineering for Stress To
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Metabolic Engineering for Stress To
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Metabolic Engineering for Stress To
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Metabolic Engineering for Stress To
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Metabolic Engineering for Stress To
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Metabolic Engineering for Stress To
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- Page 342 and 343: 336 Index Auxins, 146 Avena sativa
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