198 Topics in Current Chemistry Editorial Board: A. de Meijere KN ...
198 Topics in Current Chemistry Editorial Board: A. de Meijere KN ...
198 Topics in Current Chemistry Editorial Board: A. de Meijere KN ...
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194 M.R. Caira<br />
approach when used on its own. However, used <strong>in</strong> comb<strong>in</strong>ation with the Rietveld<br />
method, its chances of success are very significantly improved, as recently<br />
<strong>de</strong>monstrated for a polymorphic system [146]. Of two polymorphs, A and B, of<br />
a guanid<strong>in</strong>e <strong>de</strong>rivative (1), only form B was available <strong>in</strong> the form of s<strong>in</strong>gle<br />
crystals and its structure was solved <strong>in</strong> the conventional manner us<strong>in</strong>g X-ray<br />
diffraction methods. Polymorph A was available only as a pow<strong>de</strong>r and the structural<br />
problem was further complicated by molecular features allow<strong>in</strong>g not only<br />
for different conformers of the molecule, but also different tautomers. In<strong>de</strong>x<strong>in</strong>g<br />
of 26 l<strong>in</strong>es of an XRD pattern of polymorph A measured on a Gu<strong>in</strong>ier camera led<br />
to the assignment of the tricl<strong>in</strong>ic system. Energy calculations us<strong>in</strong>g MOPAC93<br />
were used to search for likely conformers and tautomers suitable for crystal<br />
pack<strong>in</strong>g calculations. High-precision ab <strong>in</strong>itio quantum mechanical methods<br />
were used to confirm the trial mo<strong>de</strong>ls, the four most stable ones be<strong>in</strong>g chosen for<br />
pack<strong>in</strong>g analysis us<strong>in</strong>g a corrected Dreid<strong>in</strong>g force-field. Two routes were pursued,<br />
one assum<strong>in</strong>g the XRD <strong>in</strong><strong>de</strong>x<strong>in</strong>g results, the other ignor<strong>in</strong>g them. In the<br />
first case, crystal structures were generated for the space group P1 – only, lead<strong>in</strong>g<br />
to a most stable structure with unit cell parameters very close to those <strong>de</strong>duced<br />
from the <strong>in</strong><strong>de</strong>x<strong>in</strong>g. Subsequent optimisation and Rietveld ref<strong>in</strong>ement yiel<strong>de</strong>d a<br />
f<strong>in</strong>al structure with an R-factor of around 10%. When the <strong>in</strong><strong>de</strong>x<strong>in</strong>g results were<br />
ignored, stable conformers were packed <strong>in</strong> common space groups (e.g. P1 – ,P2 1/c,<br />
P2 12 12 1). Of the predicted force-field m<strong>in</strong>imised structures, that which gave the<br />
best agreement with the experimental XRD pattern turned out to be one <strong>in</strong> the<br />
space group P1 – . Follow<strong>in</strong>g <strong>in</strong>teractive Rietveld ref<strong>in</strong>ement, this structure<br />
(gratify<strong>in</strong>gly) converged to the same one as <strong>de</strong>term<strong>in</strong>ed assum<strong>in</strong>g the <strong>in</strong><strong>de</strong>x<strong>in</strong>g<br />
results. A very important feature of this study was the use of an ord<strong>in</strong>ary <strong>in</strong>house<br />
XRD pattern (as opposed to a high-resolution pattern) for the <strong>in</strong><strong>de</strong>x<strong>in</strong>g<br />
and Rietveld ref<strong>in</strong>ement steps. The authors po<strong>in</strong>ted out that both the ab <strong>in</strong>itio<br />
quantum mechanical as well as the pack<strong>in</strong>g calculations for this problem consumed<br />
enormous amounts of computational resources. They nevertheless predicted<br />
that structure <strong>de</strong>term<strong>in</strong>ation based on an ord<strong>in</strong>ary pow<strong>de</strong>r pattern and<br />
pack<strong>in</strong>g calculations could evolve <strong>in</strong>to a reliable and <strong>in</strong>expensive rout<strong>in</strong>e procedure<br />
<strong>in</strong> view of the envisaged drop <strong>in</strong> computational costs which they state is<br />
about an or<strong>de</strong>r of magnitu<strong>de</strong> every three years.<br />
The structure of a metastable and shortlived polymorph of the drug<br />
piracetam (2) has been solved from XRD data us<strong>in</strong>g the AAP method [147].<br />
This species (Form I) was prepared by heat<strong>in</strong>g a mixture of Forms II and III<br />
and quench<strong>in</strong>g at room temperature. Form I spontaneously transforms <strong>in</strong>to II<br />
at 298 K with<strong>in</strong> a few hours of quench<strong>in</strong>g, but it was possible to capture<br />
high-resolution XRD data with<strong>in</strong> two hours us<strong>in</strong>g a position-sensitive <strong>de</strong>tector.<br />
The same (known) molecular conformation as occurs <strong>in</strong> Forms II and III<br />
1 guanid<strong>in</strong>e <strong>de</strong>rivative 2 piracetam