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Administrator<br />

constant), while θ 0 defines the equilibrium angle.<br />

This equation estimates the energy associated with<br />

deformation about the equilibrium bond angle. The<br />

constant, 0.02191418, is a conversion factor to<br />

obtain the final units as kcal/mole.<br />

Unique parameters for angle bending are assigned<br />

to each bonded triplet of atoms based on their atom<br />

types (C-C-C, C-O-C, C-C-H). For each triplet of<br />

atoms, the equilibrium angle differs depending on<br />

what other atoms the central atom is bonded to.<br />

For each angle there are three possibilities: XR2,<br />

XRH or XH2. For example, the XH2 parameter<br />

would be used for a C-C-C angle in propane,<br />

because the other atoms the central atom is bonded<br />

to are both hydrogens. For isobutane, the XRH<br />

parameter would be used, and for 2,2-<br />

dimethylpropane, the XR2 parameter would be<br />

used.<br />

The effect of the K b and θ 0 parameters is to<br />

broaden or steepen the slope of the parabola. The<br />

larger the value of K b , the more energy is required<br />

to deform an angle from its equilibrium value.<br />

Shallow potentials are achieved with K b values less<br />

than 1.0.<br />

A sextic term is added to increase the energy of<br />

angles with large deformations from their ideal<br />

value. The sextic bending constant, SF, is defined in<br />

the MM2 Constants table. With the addition of the<br />

sextic term, the equation for angle bending<br />

becomes:<br />

E Bend<br />

= 0.02191418 ∑ K [(θ −θ b o<br />

) 2 + SF(θ −θ o<br />

) 6 ]<br />

Angles<br />

NOTE: The default value of the sextic force constant<br />

is 0.00000007. To precisely reproduce the energies<br />

obtained with Allinger’s force field: set the sextic<br />

bending constant to “0” in the MM2 Constants tables.<br />

There are three parameter tables for the angle<br />

bending parameters:<br />

• Angle Bending parameters<br />

• 3-Membered Ring Angle Bending parameters<br />

• 4-Membered Ring Angle Bending parameters<br />

There are three additional angle bending force<br />

constants available in the MM2 Constants window.<br />

These force constants are specifically for carbons<br />

with one or two attached hydrogens. The following<br />

force constants are available.<br />

The numbers refer to atom types, which can be<br />

found in the Atom Types Table in Chem3D.<br />

• -CHR- Bending K for 1-1-1 angles<br />

• -CHR- Bending K for 1-1-1 angles in<br />

4-membered rings.<br />

• -CHR- Bending K for 22-22-22 angles in<br />

3-membered rings.<br />

The -CHR- Bending K b for 1-1-1 angles allows<br />

more accurate force constants to be specified for<br />

Type 1 (-CHR-) and Type 2 (-CHR-) interactions.<br />

The -CHR-Bending K b for 1-1-1 angles in<br />

4-membered rings and the -CHR- Bending K b for<br />

22-22-22 angles (22 is the atom type number for C<br />

Cyclopropane) in 3-membered rings differ from the<br />

-CHR- Bending K b for 1-1-1 angles and require<br />

separate constants for accurate specification.<br />

Torsion Energy<br />

Ε Twist<br />

=<br />

∑ V n<br />

1 + cos(nφ − φ)<br />

2<br />

Torsions<br />

[ ]<br />

This term accounts for the tendency for dihedral<br />

angles (torsionals) to have an energy minimum<br />

occurring at specific intervals of 360/n. In<br />

Chem3D, n can equal 1, 2, or 3.<br />

Ε Twist<br />

=<br />

∑<br />

Torsions<br />

V 1<br />

( 1 + cosφ)+ V 2<br />

2<br />

2 ( 1 + cos2φ)+<br />

V 3<br />

2<br />

( 1+ cos3φ )<br />

The V n /2 parameter is the torsional force constant.<br />

It determines the amplitude of the curve. The n<br />

signifies its periodicity. nφ shifts the entire curve<br />

134•<strong>Com</strong>putation Concepts<br />

<strong>CambridgeSoft</strong><br />

Molecular Mechanics Theory in Brief

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