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Administrator Opening an Oracle Database To open an Oracle database: 1. Click the Oracle Database button in the Database tab of the Properties dialog. This brings up the CS Oracle Connection dialog. Oracle Database button NOTE: The Oracle Database button is available to any user. There is no check to see whether the machine is a valid Oracle client. 2. Enter values for host name, user name, and password — the same values you use to log in from any Oracle client. OR: Choose a name from the drop-down list of recently-used items. When you choose an item from this list, it automatically fills in the user name, and the password if Save password was checked when the item was created. NOTE: The first time you bring up the Oracle Connection dialog box there is no list of recent items, so ChemFinder offers to create one for you. If you accept, it generates a list of all available hosts, as found in the file tnsnames.ora created during Oracle client configuration. The database is opened and the list of tables displayed. NOTE: The list of tables shown in the tree consists of all tables and views owned by the current user, plus those to which the user has been granted certain privileges. To see the details, you can turn on SQL tracing while a database is being opened. 3. Proceed as you would for any ChemFinder database: click to select the table you want to display, set other desired options, and check the box on the Form tab if you want to generate a form automatically. Notice the new Oracle tab of the dialog, described in See “Setting Oracle Preferences” on page 356. The features on this tab are mainly for advanced users and do not require adjustment. NOTE: The Oracle tab appears in the Properties dialog only when an Oracle database is open. 4. Click OK. The database opens, in a display form if you requested one. The Database Wizard can also be used to open an Oracle database. A button on the Wizard labelled CS Oracle Cartridge brings up the appropriate Oracle parts of the process. When you have opened an Oracle database, note that some Properties dialog tabs show entries not available in ChemFinder, including: • Database tab: CS Oracle Cartridge version if any. • Table tab: Table owner name; name of primary index if any. • Field tab: Oracle native data type name; name of associated index if any. When you open an Oracle database and select a table, ChemFinder/Oracle gathers information about the columns. If you open a table you know to 354•ChemFinder/Oracle <strong>CambridgeSoft</strong> Opening an Oracle Database
contain structures, and ChemFinder/Oracle does not show a structure (or formula or molweight) column, then it may be necessary to set up some configuration information about the table. For details, see “Configuration Via CF_SETTINGS Table” on page 704. Searching From the user's point of view, searching in ChemFinder/Oracle works basically the same way as in ChemFinder: you enter a query, search, then work with the hitlist. Internally, however, the ChemFinder/Oracle machinery is quite different. There are three types of table involved in handling hit lists. All are created in your own tablespace. One is global, applying to all lists saved from any table; others are connected to the particular table or view being searched. • CF_HITLISTS. The directory of all saved lists. This table is created the first time any list is saved. • SAVED_tablename: All lists which have been explicitly saved from a given table or view. This is created the first time a list is saved. • HITS_tablename: All lists automatically saved after every search over a given table or view. This table is created the first time a search or list operation is carried out and is deleted at the end of the session. Here's what happens when you present a query to ChemFinder/Oracle: 1. If the query contains a structure, it is converted to a text representation and copied to a temporary table. NOTE: The table is called temp_queries. It is created in the CSCartridge tablespace, and removed as soon as the search is finished or interrupted. ChemFinder does not yet handle the case of multiple structure boxes where more than one contains a query. 2. The query is converted to a SQL select statement. Query components in form boxes are ANDed together (just as in ChemFinder), where the structural parts are calls into the CS Oracle Cartridge structure search functions. 3. The hits table is created, if it does not already exist. 4. A unique ID is assigned to the new list which will result from the search. 5. The select statement is wrapped in a larger SQL statement which will cause the results to be deposited directly into the hits table. 6. The SQL is executed. 7. When the search is complete, the results are new rows in the hits table. Each row contains the new list ID alongside the ID of a record from the searched table. 8. The final list is prepared by a join, selecting rows from the main table which have record ID's matching those of the new list in the hits table. The resulting list is ready to browse, save, export, etc. NOTE: Text searches in Oracle are case sensitive. You will get different hits from the query “benz*” than from “Benz*.” Handling Lists There are differences between ChemFinder and ChemFinder/Oracle in working with hitlists: • Save List does not bring up a file dialog in ChemFinder/Oracle; instead, it presents a dialog in which you enter a name and a line of comments for each list. • Restore List presents a dialog in which you choose from the available saved lists (see screen shot below); double-click to select one. ChemFinder <strong>ChemOffice</strong> 2005/ChemFinder ChemFinder/Oracle • 355 Searching
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ChemOffice.Com ® ChemOffice ® Che
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License Information ChemOffice, Che
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· Licensed users of ChemOffice Ent
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computer, except as provided below.
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Q: IS IT OK TO COPY MY COLLEAGUE’
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A Guide to CambridgeSoft Manuals An
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Chapter 31: Changes and Audit Trail
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Administrator Tutorial 7: Docking M
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Administrator Connection Table . .
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Administrator Specifying Properties
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Administrator Undoing Changes . . .
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Administrator Chapter 28: Introduci
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Administrator Atom Properties . . .
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Administrator Deleting a Field Type
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Administrator Example 2. . . . . .
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Administrator Reaction Center . . .
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Administrator In addition to browsi
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Administrator Microsoft®Windows®
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Administrator Truncated-Newton-Raph
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Administrator the activation each t
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Administrator The following table d
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Administrator • Stereo Pairs—A
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Administrator • Bond Angles—Dis
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Administrator The Building Toolbar
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Administrator The Calculation Toolb
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Administrator 1. Right-click in the
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Administrator • In the Model Sett
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Administrator modes and color setti
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Administrator 26 •Chem3D Basics C
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Administrator 2. Click the ChemDraw
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Administrator 5. Press the Enter ke
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Administrator In the Measurements t
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Administrator Tutorial 7: Docking M
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Administrator To save the iteration
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The allyl radical, CH 2 =CHCH 2·,
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Administrator Determine the raw spi
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Administrator atoms are relatively
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Administrator The following table d
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Administrator When Correct Atom Typ
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Administrator To use the same text
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Administrator Example 2. Building a
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Administrator copied into blank tab
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Administrator 3. Type the atom type
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Administrator Clean Up Structure or
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Administrator Refining a Model Afte
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Administrator Selecting Multiple At
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Administrator New in Chem3D version
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Administrator 3. Hold down the Shif
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Administrator • Second Positioned
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Administrator A variety of other ba
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Administrator staggered form. The m
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Administrator improvements in each
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Administrator 250•ChemFinder Tuto
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The Open dialog box appears. To cho
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A data source tree appears, contain
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Administrator To save a metafile fr
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Administrator To edit this data, 1.
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Administrator Desired Result Remove
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Administrator Exporting (continued)
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Administrator Search Details prefer
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Administrator Subforms (continued)
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Administrator User interface 9 User
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Administrator xxxviii• CambridgeS
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CAMBRIDGESOFT ChemOffice Desktop to
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CS ChemOffice Software Suites ChemO
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DESKTOP CS Chem3D Molecular Modelin
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DESKTOP CS ChemFinder Searching and
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ENTERPRISE ChemOffice WebServer Ent
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KNOWLEDGE E-Notebook Enterprise Des
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KNOWLEDGE Document Manager Desktop
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KNOWLEDGE 21CFR11 Compliance Electr
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RESEARCH & Registration System Chem
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RESEARCH & Inventory Manager Chemic
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RESEARCH & CombiChem Enterprise Des
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RESEARCH & BioAssay HTS Biological
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CHEMICAL ChemACX Database Available
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CHEMICAL The Merck Index Chemistry
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CHEMICAL Chemical Databases Referen
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CONSULTING & Consulting & Services
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CS Software Problem Report For fast
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