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Administrator Chapter 28: Introducing E-Notebook 9.0 New Features. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 383 Terminology . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 384 About the E-Notebook Guide . . . . . . . . . . . . . . . 385 Getting Started in E-Notebook. . . . . . . . . . . . . . . 386 Logging In . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 386 Start Menu Login . . . . . . . . . . . . . . . . . . . . . . . 386 Logging in with Internet Explorer . . . . . . . . 386 Navigation Overview . . . . . . . . . . . . . . . . . . . . . . 386 Security Overview. . . . . . . . . . . . . . . . . . . . . . . . . 387 Chapter 29: E-Notebook User's Guide Overview . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 389 Working with the User Collection. . . . . . . . . . . . . 390 Adding a New Collection to the User Collection . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 391 Adding a Reference within the User Collection . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 391 Browsing up to the User Group . . . . . . . . . . . . 391 Working with Notebooks . . . . . . . . . . . . . . . . . . . . 391 Creating a Notebook . . . . . . . . . . . . . . . . . . . . . . 391 Working with Pages and Experiments . . . . . . . . . 392 Creating a Page or Experiment . . . . . . . . . . . . . 392 Creating a Page or Experiment from a Template . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 392 Closing and Reopening Pages and Experiments . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 393 Working with Folders . . . . . . . . . . . . . . . . . . . . . . . 393 Creating a Folder. . . . . . . . . . . . . . . . . . . . . . . . . . 393 Adding a Reference to the Folder . . . . . . . . . . . 393 Working with the User Configuration Folder. . . 394 Working with Reactants Collections. . . . . . . . . . . 394 Adding a New Reactant to an Existing Reactant Collection . . . . . . . . . . . . . . . . . . . . . . . 394 Adding a New Reactant Collection . . . . . . . . . . 395 Browsing the Collection Tree . . . . . . . . . . . . . . . . 395 Showing and Hiding Collections . . . . . . . . . . . . 396 Hiding the Collection Tree . . . . . . . . . . . . . . . . . 396 Limiting Collection Browsing. . . . . . . . . . . . . . . 396 Browsing from Home . . . . . . . . . . . . . . . . . . . . . 397 Browsing at a Higher Level. . . . . . . . . . . . . . . . . 397 Browsing the Entire Collection Tree . . . . . . . . 397 Managing and Organizing Collections . . . . . . . . 398 Organizing Collections . . . . . . . . . . . . . . . . . . . . 398 Moving Collections within a Container Collection . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 399 Moving Collections between Container Collections . . . . . . . . . . . . . . . . . . . . . . . . . . . . 399 Creating a Reference within the Collection Tree . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 400 Duplicating a Collection within a Container Collection . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 400 Copying a Collection . . . . . . . . . . . . . . . . . . . . 401 Renaming a Collection . . . . . . . . . . . . . . . . . . 401 Deleting a Collection . . . . . . . . . . . . . . . . . . . 402 Viewing Collection Properties. . . . . . . . . . . . . . 402 Importing and Exporting Collections . . . . . . . 403 Importing a Collection . . . . . . . . . . . . . . . . . . 403 Exporting a Collection . . . . . . . . . . . . . . . . . . 403 Working with Templates. . . . . . . . . . . . . . . . . . . 404 Changing Collection Security Properties. . . . . 404 Collection Security . . . . . . . . . . . . . . . . . . . . . . 405 Transition Security . . . . . . . . . . . . . . . . . . . . . . 406 Performing a Collection Transition . . . . . . . . . 407 Exporting a Collection or Section to MS Word . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 407 Printing Collections . . . . . . . . . . . . . . . . . . . . . . . 408 Printing Multiple Collections at Once . . . . . 409 Chapter 30: Reactions, MS Word, MS Excel, and Other Sections Working with Reaction Sections. . . . . . . . . . . . . . 411 Drawing and Analyzing Reactions . . . . . . . . . . 412 Drawing a Structure or Reaction . . . . . . . . . 412 Expanding the Drawing Window . . . . . . . . . 413 Working with the Reaction Toolbar . . . . . . . . . 413 Adding Structures with the Reaction Toolbar . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 413 Filtering Acronyms with the Reaction Toolbar . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 414 Working with the Stoichiometry Table . . . . . . 415 Adding Information to the Stoichiometry Table . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 416 Removing Reactants and Products from the Stoichiometry Table . . . . . . . . . . . . . . . . 417 Working with Autotext . . . . . . . . . . . . . . . . . . . . 417 <strong>CambridgeSoft</strong>
Inserting Reactants and Products with AutoText . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 418 Adding Items from the AutoText Pane . . . 419 Inserting Links with Autotext . . . . . . . . . . . . 420 Inserting Custom Autotext . . . . . . . . . . . . . . 420 Creating New Autotext Definitions . . . . . . . 421 Working with Property Lists . . . . . . . . . . . . . . . 423 Adding Properties to Property Lists . . . . . . 424 Removing Properties from a Property List 424 Setting and Editing Values in a Property List . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 424 Working with Numerical Units in Property Lists . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 425 Creating a Reference within a Property List 427 Performing the Next Step Function for a Reaction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 428 Working with MS Word Sections . . . . . . . . . 428 Working with Ancillary Data Sections . . . . 429 Working with Spectrum and Spectra Sections . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 430 Working with Table Sections . . . . . . . . . . . . . . . 432 Adding Columns and Rows to a Table . . . . 432 Removing Columns and Rows from a Table . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 433 Organizing Columns and Rows in a Table . 434 Resizing Columns and Rows in a Table . . . 435 Pivoting a Table . . . . . . . . . . . . . . . . . . . . . . . . 435 Adding Information to a Table Cell . . . . . . 435 Working with Structures and Images in Tables . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 436 Changing Information in a Table Cell . . . . . 437 Working with Numerical Units in Tables . . 437 Creating a Reference within a Table Cell . . 438 Working with MS Excel Sections . . . . . . . . . . . 439 Importing an MS Excel document . . . . . . . . 439 Managing and Organizing Sections . . . . . . . . . 440 Creating a Section . . . . . . . . . . . . . . . . . . . . . . 440 Changing a Section . . . . . . . . . . . . . . . . . . . . . 440 Removing a Section . . . . . . . . . . . . . . . . . . . . . 441 Moving a Section within a Collection . . . . . 441 Cutting and Pasting a Section . . . . . . . . . . . . 441 Renaming a Section . . . . . . . . . . . . . . . . . . . . . 442 Duplicating a Section within a Collection . 442 Duplicating a Section between Collections 442 Exporting Sections to MS Word . . . . . . . . . . 443 Printing Sections . . . . . . . . . . . . . . . . . . . . . . . . 444 Chapter 31: Changes and Audit Trail Working with the Changes Icon . . . . . . . . . . . . 445 Saving Changes to a Collection . . . . . . . . . . . . . 445 Clicking the Changes Icon . . . . . . . . . . . . . . . 446 Selecting Save Changes or Save and Annotate Changes from the Changes Menu . . . . . . . . 446 Saving Changes by Browsing to Another Collection . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 446 Saving Changes through Autosave . . . . . . . . 446 Saving Changes through Backup and Restore . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 446 Annotation of Changes . . . . . . . . . . . . . . . . . . . . 447 Providing Required Annotation . . . . . . . . . . 447 Providing Unprompted, Optional Annotation . . . . . . . . . . . . . . . . . . . . . . . . . . . . 448 Working with the History Pane . . . . . . . . . . . . . 448 Specifying an Annotation through the History Pane . . . . . . . . . . . . . . . . . . . . . . . . . . 449 Visual Display of Changes . . . . . . . . . . . . . . . . . 449 Chapter 32: Searching Searching for Collections . . . . . . . . . . . . . . . . . . . . 453 Query Text Field . . . . . . . . . . . . . . . . . . . . . . . . . . 454 Chemical Structure Field . . . . . . . . . . . . . . . . . . . 454 Search Location Field. . . . . . . . . . . . . . . . . . . . . . 454 Collection (Metadata) Properties . . . . . . . . . . . . 455 Property Query and Table Query Fields . . . . . 455 Searching for Sections . . . . . . . . . . . . . . . . . . . . . . . 455 Query Text Field . . . . . . . . . . . . . . . . . . . . . . . . . . 456 Chemical Structure Field . . . . . . . . . . . . . . . . . . . 456 Search Location Field. . . . . . . . . . . . . . . . . . . . . . 456 Collection (Metadata) Properties . . . . . . . . . . . . 456 Property Query and Table Query Fields . . . . . 456 Chemical Structure Search . . . . . . . . . . . . . . . . . . . 457 General Properties . . . . . . . . . . . . . . . . . . . . . . . . 458 Atoms . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 458 Bonds . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 458 Substituents . . . . . . . . . . . . . . . . . . . . . . . . . . . . 459 Charges and Radicals . . . . . . . . . . . . . . . . . . . . 459 Isotopes . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 460 <strong>ChemOffice</strong> 2005
Page 1: ChemOffice.Com ® ChemOffice ® Che
Page 4 and 5: License Information ChemOffice, Che
Page 6 and 7: · Licensed users of ChemOffice Ent
Page 8 and 9: computer, except as provided below.
Page 10 and 11: Q: IS IT OK TO COPY MY COLLEAGUE’
Page 12 and 13: A Guide to CambridgeSoft Manuals An
Page 14 and 15: Chapter 31: Changes and Audit Trail
Page 16 and 17: Administrator Tutorial 7: Docking M
Page 18 and 19: Administrator Connection Table . .
Page 20 and 21: Administrator Specifying Properties
Page 22 and 23: Administrator Undoing Changes . . .
Page 26 and 27: Administrator Atom Properties . . .
Page 28 and 29: Administrator Deleting a Field Type
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Page 42 and 43: Administrator The following table d
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Administrator The following table d
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Administrator When Correct Atom Typ
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Administrator Example 2. Building a
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Administrator Clean Up Structure or
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Administrator Refining a Model Afte
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Administrator Selecting Multiple At
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Administrator New in Chem3D version
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Administrator Dragging moves atoms
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Administrator 3. Hold down the Shif
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Administrator • Second Positioned
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Administrator • From the Computat
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Administrator Density surface is ca
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Administrator 100•Displaying Mode
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Administrator If you want to displa
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Administrator Example: To examine t
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Administrator Chem3D provides two o
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Administrator change a property. By
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Administrator To add to a group: 1.
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To stop spinning: • On the Movie
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Administrator • Semiempirical Ext
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Administrator • Molecular mechani
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Administrator The van der Waals int
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Administrator 6. The modified value
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Administrator A variety of other ba
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Administrator Molecular wave functi
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Administrator activation barriers.
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Administrator Intermediate status m
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Administrator staggered form. The m
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Administrator During dragging, the
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Compute Properties The Compute Prop
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Administrator C(2)-C(3)-C(4) bond a
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Administrator The procedures assume
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Administrator improvements in each
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Administrator • Overall errors in
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Administrator TRIPLET QUARTET QUINT
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Administrator Chemical symbol ++ ba
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Administrator 4. Click Run. A new m
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Administrator criteria, to optimize
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Administrator 6. Hold down the S ke
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Administrator Molecular Surfaces Mo
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Administrator To specify the calcul
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Property Description Error Message
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The Step 4 of 4 dialog box appears.
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Administrator • From the ChemOffi
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Administrator Screen Element Table
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Administrator • From the View men
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Administrator A form displays data
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9. Click the Form tab. There should
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to see some of the information avai
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• From the Record menu, choose Fi
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Administrator The Table view appear
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+ The ISICCR database opens in Chem
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Administrator To search over a list
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When you release the mouse button,
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Administrator 250•ChemFinder Tuto
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The Open dialog box appears. To cho
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A data source tree appears, contain
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ChemFinder saves the form with a .c
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The framed data box is labeled. NOT
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Administrator To save a metafile fr
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Administrator • Rich Text—displ
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Administrator Adding a Data Box Men
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Administrator Customizing Numbers U
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Administrator When the selection to
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To line up objects on a form: Admin
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Administrator to those usernames. M
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Administrator • Take the appropri
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To disable security and reset defau
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Administrator 282•Relational Data
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Administrator The following table s
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1. Click one of the column headers
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Administrator Creating Tables There
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Creating Fields Administrator 4. Fr
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The name of the new field appears i
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Administrator ChemFinder creates a
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Administrator atoms contained in th
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Administrator • If you are editin
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Administrator 308•Visualizing Dat
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Administrator Using Log Files Durin
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Administrator d. The input file has
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Administrator Export to SDFile When
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Administrator benz OR *bromo* Benze
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Search Type Administrator Normal Se
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Administrator The hit list will inc
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Administrator as part of the data a
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Administrator • Setting the searc
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If you want to Then click Administr
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Administrator ChemFinder searches o
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Administrator • With Stereo Cente
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Administrator Managing Queries Chem
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To reset searches to the full datab
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Administrator To create the hitlist
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Administrator Using ChemDraw's Atom
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Administrator With reaction centers
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To set the options for what ChemFin
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Administrator Creating a Script To
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Administrator rather difficult, but
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Administrator 352•Customizing Che
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Administrator Opening an Oracle Dat
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Administrator • Restore Previous
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Administrator 6. Set other options
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Administrator 360•ChemFinder/Orac
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To activate CombiChem/Excel: The Co
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Administrator Adding a Reaction Tem
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Administrator Reactant List Format
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Administrator • You can configure
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An analysis of the reaction steps a
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Administrator ChemFinder/Office tit
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Administrator For more information
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Administrator The Open Chemical Str
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Administrator 3. From the Molecules
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Administrator To use the Search Opt
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Changing the Chem- Finder/Office Pr
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Administrator • Enhanced table of
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Administrator In addition, this gui
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Administrator 388• Introducing E-
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Administrator You can organize coll
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Creating a Page or Experiment Admin
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Administrator Working with the User
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Administrator Showing and Hiding Co
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Administrator • Right-click any b
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Administrator If your system config
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Administrator Your system configura
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Administrator Working with Template
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Administrator Desired Result Change
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Administrator To export to MS Word:
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Administrator 410• E-Notebook Use
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Administrator NO 2 NO 2 Me Me HC(OE
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Administrator • Top of Arrow as R
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Administrator • Equivalents - the
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The example below shows the Prepara
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Administrator Ethanol was selected,
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Administrator Type in the AutoText
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Adding Properties to Property Lists
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Type of Measurement Permitted Units
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3. Enter the URL and click OK. Work
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Administrator A new Ancillary Data
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Administrator Replacing a Spectrum
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The row is removed from the Table.
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Administrator you enter an invalid
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Administrator Type of Measurement m
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Administrator 4. The spreadsheet ap
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5. Click the section menu icon. The
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Administrator Printing Sections You
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Administrator Clicking the Changes
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. Administrator The version of the
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Administrator In some configuration
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Administrator 452• Changes and Au
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Administrator 2. If no form appears
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Administrator Query Text Field The
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Administrator • In searching subs
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Administrator Isotopes Isotopic lab
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Finds: Cl Does not find: Finds: O D
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Administrator either side) is part
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Administrator • Browse to the roo
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Administrator 2. Select Remove Prop
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Administrator Advanced Text Searchi
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For example, the following searches
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Administrator Searching For ... Ret
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3. Click the Search In... checkbox
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Administrator The Collection Tree a
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2. Select Session Manager.... The S
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Administrator A new section type ap
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Administrator See the following top
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Administrator 3. If necessary, clic
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compute the checksum for the upload
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Administrator 4. A new Section List
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Administrator Managing the Audit Se
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Administrator The field appears in
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A menu appears. 2. Select Box Prope
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Showing the Name of a Box To show t
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Administrator contained box accordi
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Administrator In the form we are sh
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Administrator For example, if there
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Administrator 506• Managing Secti
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Administrator Several fields types
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Administrator • Default Font - yo
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The Section Type Configuration dial
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Administrator Example 1 In this exa
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Administrator See the following top
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Administrator Associating a list of
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Administrator • Username - An opt
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Administrator To add a property lis
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Administrator from the Property dro
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Administrator The Field Properties
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Administrator Another feature of ta
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Administrator 3. Right-click the Ta
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Administrator • SupplierID - the
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Administrator reactants and product
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Managing Search Fields Administrato
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Administrator • Certain types of
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4. Enter a name for the field and s
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Administrator To access the Add-In
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Administrator In the query table fi
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Administrator 546• Managing Field
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Creating a New Collection Type The
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Administrator 5. Click the Add>> bu
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Administrator A menu appears with t
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Administrator 2. To expand the coll
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Administrator Adding a Collection L
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Administrator A menu appears. 4. Se
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Administrator the Rename command in
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Administrator contained collection
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Administrator Creating a Search Typ
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CS Software Problem Report For fast
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