17.11.2014 Views

ChemOffice.Com - CambridgeSoft

ChemOffice.Com - CambridgeSoft

ChemOffice.Com - CambridgeSoft

SHOW MORE
SHOW LESS

You also want an ePaper? Increase the reach of your titles

YUMPU automatically turns print PDFs into web optimized ePapers that Google loves.

The allyl radical, CH 2 =CHCH 2·, is a textbook<br />

example of resonance-enhanced stabilization:<br />

6. Also in the Theory tab, set the Spin Multiplicity<br />

to 2.<br />

Administrator<br />

H 2 C<br />

H<br />

C<br />

To examine Radicals with Spin Density surfaces:<br />

1. From the File menu, choose New.<br />

2. Type 1-propene in the ChemDraw<br />

Name=Struct text box.<br />

A molecule of 1-propene appears.<br />

Create a radical:<br />

CH 2<br />

H 2 C<br />

1. Select the H9 hydrogen.<br />

2. Press Delete.<br />

A dialog box appears asking if you want to turn<br />

off rectification. Chem3D is chemically<br />

intelligent, and knows that in most cases<br />

carbon atoms have four substituents. Radicals<br />

are one of the rare exceptions.<br />

3. Click Turn Off Automatic Rectification.<br />

The propene radical is displayed.<br />

H<br />

C<br />

CH 2<br />

NOTE: If you are doing this tutorial with CSMOPAC,<br />

there is no Spin Multiplicity setting.<br />

This molecule is intended to be a radical, and setting<br />

the Spin Multiplicity ensures that it is.<br />

One of the best ways to view spin density is by<br />

mapping it onto the Total Charge Density surface.<br />

This allows you to see what portions of the total<br />

charge are contributed by unpaired electrons, or<br />

radicals.<br />

To view Spin Density mapped onto Total Charge<br />

Density Surface:<br />

1. In the Properties tab, select Molecular Surfaces<br />

and Spin Density (use Shift-click).<br />

2. Press Run.<br />

The calculation toolbar appears.<br />

When the calculation is finished, select the<br />

Trackball tool and rotate the model back and forth.<br />

It should be completely planar.<br />

4. From the Calculations menu, point to<br />

Gaussian, and choose Minimize Energy.<br />

5. In the Theory tab, set the Method to PM3, and<br />

the Wave Function to Open Shell (Unrestricted).<br />

46 •Chem3D Tutorials <strong>CambridgeSoft</strong><br />

Tutorial 9: Mapping Properties onto Surfaces

Hooray! Your file is uploaded and ready to be published.

Saved successfully!

Ooh no, something went wrong!