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Administrator Troubleshooting This section describes steps you can take that affect the overall performance of CambridgeSoft Desktop Applications, as well as steps to follow if your computer crashes when using a CS software product. Performance Below are some ways you can optimize the performance of CambridgeSoft Desktop Applications: • Macintosh: Windows: In the Performance tab in the System control panel, allocate more processor time to the application. • Install more physical RAM. The more you have, the less ChemOffice Desktop Applications will have to access your hard disk to use Virtual Memory. • Increase the Virtual Memory (VM). Virtual memory extends RAM by allowing space on your hard disk to be used as RAM. However, the time for swapping between the application and the hard disk is slower than swapping with physical RAM. Change the VM as follows: • System control panel, Performance tab. System Crashes CambridgeSoft Desktop Applications should never crash, but below are the steps you should go through to try to resolve issues that cause computer crashes while using a CS software product. 1. Restart (Macintosh) or restart Windows and try to reproduce the problem. If the problem recurs, continue with the following steps. 2. The most common conflicts concern Video Drivers, Printer Drivers, screen savers, and virus protection. If you do need to contact us, be sure to determine what type and version of drivers you are using. Video Driver related problems: If you are having problems with the display of any CambridgeSoft Desktop Application, try switching to the VGA video driver in the display Control Panel (or System Setup, and then retest the problems. If using a different driver helps, your original driver may need to be updated–contact the maker of the driver and obtain the most up-to-date driver. If you still have trouble contact us with the relevant details about the original driver and the resulting problem. Printer Driver related problems: Try using a different printer driver. If using a different driver helps, your original driver may need to be updated–contact the maker of the driver and obtain the most up-to-date driver. If you still have trouble contact us with the relevant details about the original driver and the resulting problem. 3. Try reinstalling the software. Before you reinstall, uninstall the software and disable all background applications, including screen savers and virus protection. See the complete uninstall instructions on the CambridgeSoft Technical Support web page. 4. If the problem still occurs, use our contact form at: http://www.cambridgesoft.com/services/mail and provide the details of the problem to Technical Support. 612• Technical Support CambridgeSoft Troubleshooting
Appendix C: Substructures Overview You can define substructures and add them to a substructures table. When you define a substructure, the attachment points (where unselected atoms are bonded to selected atoms) are stored with the substructure. If a substructure contains more than one attachment point (such as Ala), the atom with the lowest serial number normally becomes the first attachment point. The atom with the second lowest serial number becomes the second attachment point, and so on. However, there are situations where this general rule is not valid. Attachment point rules The following rules cover all possible situations for multiple attachment points in substructures; Rule 3 is the normal situation described above: Angles and measurements In addition to the attachment points, the measurements between the selected atoms and nearby unselected atoms are saved with the substructure to position the substructure relative to other atoms when the substructure is used to convert labels into atoms and bonds. For example, Chem3D stores with the substructure a dihedral angle formed by two atoms in the substructure and two unselected atoms. If more than one dihedral angle can be composed from selected (substructure) and unselected (non-substructure) atoms, the dihedral angle that is saved with the substructure consists of the atoms with the lowest serial numbers. Consider the following model to define a substructure for alanine: 1. If an atom has an open valence and is not attached to an atom that is unselected, it goes after any atom that is attached to an unselected atom. 2. If an atom is attached only to rectification atoms, it goes after any atom that is attached to non-rectification atoms. 3. If two atoms are the same according to the above criteria, the atom with the lowest serial number goes first. 4. If two atoms are the same according to the above criteria, then the one which is attached to the atom with the lowest serial number goes first. Since polypeptides are specified beginning with the N-terminal amino acid, N(4) should have a lower serial number than the Carboxyl C(6). To ensure that a chain of alanine substructures is formed correctly, C(1) should have a lower serial number than O(3) so that the C-C-N-C dihedral angle is used to position adjacent substructures within a label. Appendices ChemOffice 2005/Appendix Substructures • 613 Overview
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ChemOffice.Com ® ChemOffice ® Che
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Q: IS IT OK TO COPY MY COLLEAGUE’
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A Guide to CambridgeSoft Manuals An
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Chapter 31: Changes and Audit Trail
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CONSULTING & Consulting & Services
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CS Software Problem Report For fast
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