Mplus Users Guide v6.. - Muthén & Muthén

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CHAPTER 8used to select a different estimator. An explanation of the othercommands can be found in Examples 8.1 and 8.13.EXAMPLE 8.15: DISCRETE-TIME SURVIVAL MIXTUREANALYSIS WITH SURVIVAL PREDICTED BY GROWTHTRAJECTORY CLASSESTITLE: this is an example of a discrete-timesurvival mixture analysis with survivalpredicted by growth trajectory classesDATA: FILE IS ex8.15.dat;VARIABLE: NAMES ARE y1-y3 u1-u4;CLASSES = c(2);CATEGORICAL = u1-u4;MISSING = u1-u4 (999);ANALYSIS: TYPE = MIXTURE;MODEL:%OVERALL%i s | y1@0 y2@1 y3@2;f BY u1-u4@1;OUTPUT: TECH1 TECH8;y1 y2 y3u1 u2 u3 u4isfc228
Examples: Mixture Modeling With Longitudinal DataIn this example, the discrete-time survival mixture analysis model shownin the picture above is estimated. In this model, a survival model for u1,u2, u3, and u4 is specified for each class of c defined by a growthmixture model for y1-y3 (<strong>Muthén</strong> & Masyn, 2005). Each u variablerepresents whether or not a single non-repeatable event has occurred in aspecific time period. The value 1 means that the event has occurred, 0means that the event has not occurred, and a missing value flag meansthat the event has occurred in a preceding time period or that theindividual has dropped out of the study. The factor f is used to specify aproportional odds assumption for the hazards of the event. The arrowsfrom c to the growth factors i and s indicate that the means of the growthfactors vary across the classes of c.In the overall model, the | symbol is used to name and define theintercept and slope growth factors in a growth model. The names i and son the left-hand side of the | symbol are the names of the intercept andslope growth factors, respectively. The statement on the right-hand sideof the | symbol specifies the outcomes and the time scores for the growthmodel. The time scores for the slope growth factor are fixed at 0, 1, and2 to define a linear growth model with equidistant time points. The zerotime score for the slope growth factor at time point one defines theintercept growth factor as an initial status factor. The coefficients of theintercept growth factor are fixed at one as part of the growth modelparameterization. The residual variances of the outcome variables areestimated and allowed to be different across time and the residuals arenot correlated as the default.In the parameterization of the growth model shown here, the interceptsof the outcome variable at the four time points are fixed at zero as thedefault. The means and variances of the growth factors are estimated asthe default, and the growth factor covariance is estimated as the defaultbecause they are independent (exogenous) variables. The means of thegrowth factors are not held equal across classes as the default. Thevariances and covariance of the growth factors are held equal acrossclasses as the default.In the overall model, the BY statement specifies that f is measured byu1, u2, u3, and u4 where the factor loadings are fixed at one. Thisrepresents a proportional odds assumption. The mean of f is fixed atzero in class two as the default. The variance of f is fixed at zero in bothclasses. A variance for f can be estimated by using229
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Statistical Analysis With Latent Va
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TABLE OF CONTENTSChapter 1: Introdu
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IntroductionCHAPTER 1INTRODUCTIONMp
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CHAPTER 1• Regression analysis•
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CHAPTER 1When there are no covariat
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CHAPTER 1model. For example, variab
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CHAPTER 112
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CHAPTER 2details of the analysis. T
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CHAPTER 2TITLE: this is an example
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CHAPTER 2The Mplus Base and Multile
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CHAPTER 3• Wald chi-square test o
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CHAPTER 3EXAMPLE 3.1: LINEAR REGRES
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CHAPTER 3EXAMPLE 3.3: CENSORED-INFL
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CHAPTER 3example above, u1 is a bin
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CHAPTER 3EXAMPLE 3.8: ZERO-INFLATED
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CHAPTER 3x1yx2sIn this example a re
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CHAPTER 3When two parameters are re
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CHAPTER 3logistic regressions. An e
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CHAPTER 3EXAMPLE 3.15: PATH ANALYSI
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CHAPTER 3The difference between thi
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CHAPTER 3The TECH8 option is used t
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CHAPTER 4CLUSTER, and WEIGHT option
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CHAPTER 4ANALYSIS: TYPE = EFA 1 4;T
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CHAPTER 4EXAMPLE 4.3: EXPLORATORY F
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CHAPTER 4ANALYSIS command is used t
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CHAPTER 4indicators. Rotated soluti
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CHAPTER 5and a set of Poisson or ze
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CHAPTER 5Following is the set of CF
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CHAPTER 5y1f1y2y3y4f2y5y6In this ex
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CHAPTER 5above, all six factor indi
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CHAPTER 5computationally demanding
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CHAPTER 5y1 y2 y3 y4y5 y6 y7 y8y9 y
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CHAPTER 5EXAMPLE 5.8: CFA WITH COVA
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CHAPTER 5y1af1y1by1cy2af2y2by2cIn t
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CHAPTER 5that the three test forms
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CHAPTER 5EXAMPLE 5.12: SEM WITH CON
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CHAPTER 5interaction is shown in th
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CHAPTER 5In multiple group analysis
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CHAPTER 5square brackets. When a mo
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CHAPTER 5EXAMPLE 5.18: TWO-GROUP TW
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CHAPTER 5EXAMPLE 5.20: CFA WITH PAR
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CHAPTER 5unit variance of the laten
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CHAPTER 5EXAMPLE 5.24: EFA WITH COV
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CHAPTER 5y7 y8 y9 y10 y11 y12y1y2f1
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CHAPTER 5y1 y2 y3 y4y5 y6 y7 y8y9 y
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CHAPTER 5In this example, the multi
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CHAPTER 5MODEL: f1-f2 by y1-y10 (*1
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CHAPTER 6slopes are also used to re
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CHAPTER 6for each graphical display
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CHAPTER 6In this example, the linea
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CHAPTER 6be different across time a
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CHAPTER 6name of the censored varia
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CHAPTER 6outcomes with a numerical
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CHAPTER 6EXAMPLE 6.7: LINEAR GROWTH
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CHAPTER 6EXAMPLE 6.8: GROWTH MODEL
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CHAPTER 6EXAMPLE 6.10: LINEAR GROWT
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Examples: Growth Modeling And Survi
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CHAPTER 6EXAMPLE 6.17: LINEAR GROWT
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CHAPTER 6y1 y2 y3 y4isx a21 a22 a23
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CHAPTER 6The GROUPING option is use
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CHAPTER 6occurred, and a missing va
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CHAPTER 6In this example, the conti
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CHAPTER 6intervals plus one. These
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CHAPTER 6140
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CHAPTER 7zero-inflated Poisson regr
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CHAPTER 7Graphical displays of obse
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CHAPTER 7EXAMPLE 7.1: MIXTURE REGRE
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CHAPTER 7is to be performed. By sel
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CHAPTER 7EXAMPLE 7.2: MIXTURE REGRE
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CHAPTER 7u1u2cu3u4In this example,
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CHAPTER 7In the MODEL command, user
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CHAPTER 7The difference between thi
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CHAPTER 7EXAMPLE 7.9: LCA WITH CONT
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CHAPTER 7indicators, the default co
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CHAPTER 7EXAMPLE 7.12: LCA WITH BIN
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CHAPTER 7The first hypothesis is sp
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CHAPTER 7The CLASSES option is used
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CHAPTER 7between the first two vari
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CHAPTER 7EXAMPLE 7.17: CFA MIXTURE
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CHAPTER 7u11 u12 u13u21 u22 u23c1c2
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CHAPTER 7In this example, the model
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CHAPTER 7EXAMPLE 7.21: MIXTURE MODE
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Page 190 and 191: CHAPTER 7In this example, the zero-
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Page 204 and 205: CHAPTER 8All longitudinal mixture m
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Page 212 and 213: CHAPTER 8EXAMPLE 8.3: GMM FOR A CEN
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Page 216 and 217: CHAPTER 8by adding to the name of t
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Page 228 and 229: CHAPTER 8MODEL c1:MODEL c2:MODEL c3
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Page 252 and 253: CHAPTER 9EXAMPLE 9.3: TWO-LEVEL PAT
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Page 266 and 267: CHAPTER 9u1x1fw1u2u3u4x2fw2u5u6With
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Page 280 and 281: CHAPTER 9EXAMPLE 9.14: TWO-LEVEL GR
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CHAPTER 9u11u21u31u12 u22 u32 u13 u
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CHAPTER 9statements are fixed at ze
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CHAPTER 9timesya3Withinx1yBetweenx2
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CHAPTER 9EXAMPLE 9.17: TWO-LEVEL GR
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CHAPTER 9model, the variances of th
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CHAPTER 9288
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CHAPTER 10• Complex survey data
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CHAPTER 10• 10.13: Two-level LTA
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CHAPTER 10across clusters. The rand
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CHAPTER 10refers to the part of the
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CHAPTER 10EXAMPLE 10.2: TWO-LEVEL M
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CHAPTER 10the end of the arrow poin
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CHAPTER 10EXAMPLE 10.3: TWO-LEVEL M
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CHAPTER 10random intercept y is sho
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CHAPTER 10y1 y2 y3 y4y5cfwWithinBet
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CHAPTER 10EXAMPLE 10.5: TWO-LEVEL I
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CHAPTER 10latent variable c. The fi
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CHAPTER 10u1 u2 u3 u4u5u6cxWithinBe
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CHAPTER 10EXAMPLE 10.7: TWO-LEVEL L
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CHAPTER 10In the overall part of th
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CHAPTER 10y1 y2 y3 y4iwsswxWithinBe
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CHAPTER 10Following is an alternati
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CHAPTER 10y1 y2 y3 y4iwswcxWithinBe
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CHAPTER 10coefficients of the inter
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CHAPTER 10y1 y2 y3 y4iwswcxWithinBe
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CHAPTER 10EXAMPLE 10.11: TWO-LEVEL
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CHAPTER 10In the overall part of th
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CHAPTER 10In this example, the two-
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CHAPTER 10u11 u12 u13 u14u21 u22 u2
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CHAPTER 10336
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CHAPTER 11With Bayesian analysis, m
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CHAPTER 11number of parameters and
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CHAPTER 11EXAMPLE 11.2: DESCRIPTIVE
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CHAPTER 11MODEL:OUTPUT:i s | y0@0 y
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CHAPTER 11y0 y1 y2 y3 y4 y5i s qd1
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CHAPTER 11analysis. In the second p
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CHAPTER 11DATA IMPUTATION:NDATASETS
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CHAPTER 11MODEL: %WITHIN%f1w BY u11
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CHAPTER 11TITLE:DATA:this is an exa
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CHAPTER 11The ANALYSIS command is u
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CHAPTER 12saved in an external file
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CHAPTER 12• 12.11: Monte Carlo si
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CHAPTER 12MONTE CARLO OUTPUTChi-Squ
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CHAPTER 12The column labeled Popula
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CHAPTER 12In this example, data are
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CHAPTER 12covariances of the indepe
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CHAPTER 12slope factor s. The binar
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CHAPTER 12ANALYSIS: TYPE = MIXTURE;
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CHAPTER 12MODEL MISSING:[y1-y4@-1];
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CHAPTER 12The default estimator for
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CHAPTER 12EXAMPLE 12.6 STEP 2: EXTE
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CHAPTER 12EXAMPLE 12.7 STEP 2: MONT
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CHAPTER 12MODEL MISSING command spe
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CHAPTER 12MODEL:OUTPUT:iu su | u1@0
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CHAPTER 12continuous-time survival
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CHAPTER 12MODEL:%WITHIN%c | y ON x;
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CHAPTER 12invariance across groups
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CHAPTER 13EXAMPLE 13.1: A COVARIANC
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CHAPTER 13EXAMPLE 13.4: NON-NUMERIC
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CHAPTER 13EXAMPLE 13.7: TRANSFORMIN
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CHAPTER 13EXAMPLE 13.10: EQUALITIES
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CHAPTER 13TITLE: this is an example
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CHAPTER 13EXAMPLE 13.14: SAVING DAT
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CHAPTER 13EXAMPLE 13.17: MERGING DA
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CHAPTER 13EXAMPLE 13.19: GENERATING
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CHAPTER 14• User-specified starti
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CHAPTER 14conjunction with the | sy
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CHAPTER 14Loadings for indicators o
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CHAPTER 14possible that a local sol
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CHAPTER 14GENERAL CONVERGENCE PROBL
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CHAPTER 14Model identification can
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CHAPTER 14computations will become
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CHAPTER 14covariances and regressio
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CHAPTER 14MODEL COMMAND IN MULTIPLE
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CHAPTER 14in the other two groups.
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CHAPTER 14MODEL g2: y1-y5 (2);MODEL
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CHAPTER 14variances in a model with
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CHAPTER 1432 32 2 32 2 2 3where the
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CHAPTER 14WEIGHTED LEAST SQUARES ES
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CHAPTER 14Multiple data sets genera
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CHAPTER 14Observation Cohort HD82 H
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CHAPTER 14CALCULATING PROBABILITIES
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CHAPTER 14log odds (x 0 +1) = a + b
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CHAPTER 14values are exponentiated
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CHAPTER 14available for these model
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CHAPTER 14The joint probabilities f
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CHAPTER 15THE DATA COMMANDThe DATA
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CHAPTER 15DATA LONGTOWIDE:LONG =WID
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CHAPTER 15to the number of variable
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CHAPTER 15TYPEThe TYPE option is us
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CHAPTER 15and saved using another c
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CHAPTER 15LISTWISE = ON;SWMATRIXThe
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CHAPTER 15parentheses following its
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CHAPTER 15uses a model of unrestric
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CHAPTER 15WIDEThe WIDE option is us
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CHAPTER 15LONG = y | x;where y and
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CHAPTER 15categorical using the CAT
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CHAPTER 15THE DATA MISSING COMMANDT
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CHAPTER 153. The value zero is assi
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CHAPTER 15NAMESThe NAMES option ide
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CHAPTER 15cohort. In the example ab
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CHAPTER 15THE VARIABLE COMMANDVARIA
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CHAPTER 15ASSIGNING NAMES TO VARIAB
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CHAPTER 15The USEVARIABLES option i
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CHAPTER 15MISSING ARE ethnic (9 99)
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CHAPTER 15CATEGORICALThe CATEGORICA
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CHAPTER 15where the set of variable
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CHAPTER 15COUNT = u1-u4 (p);The COU
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CHAPTER 15GROUPINGThe GROUPING opti
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CHAPTER 15TSCORESThe TSCORES option
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CHAPTER 15parentheses is placed beh
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CHAPTER 15the VARIABLE command and
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CHAPTER 15WTSCALEThe WTSCALE option
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CHAPTER 15ANALYSIS command. The sam
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CHAPTER 15MIXTURE MODELSThere are t
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CHAPTER 15Fractional values can be
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CHAPTER 15CONTINUOUS-TIME SURVIVAL
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CHAPTER 15THE DEFINE COMMANDDEFINE:
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CHAPTER 15The _MISSING keyword can
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CHAPTER 15where the variable ymean
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CHAPTER 15518
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CHAPTER 16WLS;WLSM;WLSMV;ULS;ULSMV;
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CHAPTER 16STSCALE = random start sc
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CHAPTER 16The ANALYSIS command is n
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CHAPTER 16TYPE = GENERAL RANDOM;or
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CHAPTER 16• COMPLEX computes stan
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CHAPTER 16where the first two numbe
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CHAPTER 16TWOLEVELMUML***ML**MLR**M
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CHAPTER 16BAYESIAN ESTIMATIONBayesi
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CHAPTER 16LOGIT REGRESSION VERSUS L
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CHAPTER 16where .5 is the value of
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CHAPTER 16ROTATION = TARGET (ORTHOG
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CHAPTER 16For the FAY resampling me
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CHAPTER 16OPTIONS RELATED TO NUMERI
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CHAPTER 16For other outcome types a
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CHAPTER 16BOOTSTRAPThe BOOTSTRAP op
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CHAPTER 16values produced by the pr
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CHAPTER 16OPTSEEDThe OPTSEED option
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CHAPTER 16DIFFTEST = deriv.dat;wher
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CHAPTER 16RITERATIONSThe RITERATION
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CHAPTER 16MIXUThe MIXU option is us
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CHAPTER 16With multiple chains, par
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CHAPTER 16such that convergence is
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CHAPTER 16skipped. A setting of 1 s
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CHAPTER 16566
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CHAPTER 17DEPENDENT OR INDEPENDENT
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CHAPTER 17| names and defines rando
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CHAPTER 17short for measured by. ON
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CHAPTER 17because BY statements are
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CHAPTER 17allowed with TYPE=GENERAL
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CHAPTER 172001). The target factor
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CHAPTER 17specifies that regression
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CHAPTER 17PON, the number of variab
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CHAPTER 17impliesy1 WITH y4;y1 WITH
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CHAPTER 17refers to the means of va
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CHAPTER 17f1 ON x1 x2 x3;f2 ON x1 x
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CHAPTER 17By placing an asterisk (*
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CHAPTER 17possible thresholds, thre
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CHAPTER 17A list of equality constr
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CHAPTER 17parameters. Following is
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CHAPTER 17Although y5 is assigned a
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CHAPTER 17LABELING CLASSES OF A CAT
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CHAPTER 17[y1-y4@0 i s q];If the |
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CHAPTER 17Linear for acount outcome
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CHAPTER 17MultilevelMultipleindicat
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CHAPTER 17In mixture models for con
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CHAPTER 17ATThe AT option is used w
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CHAPTER 17Numerical integration bec
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CHAPTER 17INDThe variable on the le
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CHAPTER 17PARAMETERS LABELLED IN TH
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CHAPTER 17right-hand side of one or
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CHAPTER 17Type of Parameter Distrib
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CHAPTER 17number gives the number o
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CHAPTER 17These are used to specify
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CHAPTER 17so on. In mixture modelin
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CHAPTER 17In mixture modeling, the
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CHAPTER 17A dependent variable that
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CHAPTER 17632
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CHAPTER 18CINTERVAL;CINTERVAL (SYMM
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CHAPTER 18Following is the summary
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CHAPTER 18and thresholds are found
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CHAPTER 18printed is too large to f
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CHAPTER 18where b is the unstandard
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CHAPTER 18the third column. When st
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CHAPTER 18When model modification i
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CHAPTER 18CONFIDENCE INTERVALS OF M
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CHAPTER 18NOSERROR;This option is n
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CHAPTER 18FACTOR DETERMINACIESTECHN
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CHAPTER 18THETAY1 Y2 Y3 Y4 X_______
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CHAPTER 18TECHNICAL 4 OUTPUTTECH4Th
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CHAPTER 18model with one less class
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CHAPTER 18of draws varies from 2 to
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CHAPTER 18GAMMAThe gamma matrix con
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CHAPTER 18• Analysis data• Samp
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CHAPTER 18by the program, the recod
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CHAPTER 18SIGBETWEENThe SIGBETWEEN
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CHAPTER 18using the POPULATION and/
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CHAPTER 18SURVIVAL option. Followin
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CHAPTER 18FSCORESWhen SAVE=FSCORES
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CHAPTER 18COOKSWhen SAVE=COOKS is u
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CHAPTER 18For data in fixed format,
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CHAPTER 18• Sample proportions•
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CHAPTER 18Following is an example o
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CHAPTER 18VIEWING GRAPHICAL OUTPUTS
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CHAPTER 18Following is the window t
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CHAPTER 18The plots can be exported
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CHAPTER 19CLASSES =SURVIVAL =TSCORE
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CHAPTER 19For Monte Carlo studies,
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CHAPTER 19binomial model. The lette
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CHAPTER 19where c1, c2, and c3 are
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CHAPTER 19together to generate miss
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CHAPTER 19between dependent and ind
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CHAPTER 19categories are referred t
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CHAPTER 19Following is the specific
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CHAPTER 19TSCORESThe TSCORES option
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CHAPTER 19where estimates.dat is a
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CHAPTER 19710
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CHAPTER 20DATA IMPUTATION:IMPUTE =N
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CHAPTER 20TSCORES AREnames of obser
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CHAPTER 20ESTIMATOR = ML; depends o
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CHAPTER 20STCONVERGENCE = initial s
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CHAPTER 20INTERACTIVE =PROCESSORS =
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CHAPTER 20MODEL COVERAGE:%WITHIN%%B
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CHAPTER 20TYPE IS COVARIANCE; varie
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CHAPTER 20COVERAGE =STARTING =REPSA
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Asparouhov, T. & Muthén, B. (2009a
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Hagenaars, J.A. & McCutcheon, A.L.
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Larsen, K. (2005). The Cox proporti
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Muthén, B. (2002). Beyond SEM: Gen
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Qu, Y., Tan, M., & Kutner, M.H. (19
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738
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CATEGORICALMonte Carlo, 701real dat
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SEM with EFA and CFA factors, 89-91
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inary outcome, 218-19three-category
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two-level growth mixture model (GMM
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PRIORS, 507-8PROBABILITIES, 507-8pr
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TIMEMEASURES, 478-79time-to-event v
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