24.12.2013 Views

View/Open - ARAN - National University of Ireland, Galway

View/Open - ARAN - National University of Ireland, Galway

View/Open - ARAN - National University of Ireland, Galway

SHOW MORE
SHOW LESS

You also want an ePaper? Increase the reach of your titles

YUMPU automatically turns print PDFs into web optimized ePapers that Google loves.

Chapter 2<br />

also used “high” sonication conditions to remove Escherichia coli and P.<br />

aeruginosa ATCC 27853 bi<strong>of</strong>ilm attached to a surface, however the exact<br />

conditions used were not provided in the article describing the research<br />

[114]. However, if high sonication conditions had been chosen without<br />

assessment <strong>of</strong> cells recovery it may have been wrongly assumed that the<br />

strains were unable to form a dense bi<strong>of</strong>ilm.<br />

The complete removal <strong>of</strong> viable cells was confirmed with 12 <strong>of</strong> the 13<br />

strains assessed using scanning electron microscopy. However the bi<strong>of</strong>ilm<br />

formed by the LT2 strain was not fully removed using the same conditions<br />

verified with all other 12 strains. This difference between the LT2 strain<br />

and other S. Typhimurium strains is most likely attributable to the<br />

described genetic variation <strong>of</strong> this strain with respect to sigma factor<br />

(RpoS) [105]. This genetic difference may contribute to the strain being<br />

more dense bi<strong>of</strong>ilm former than other strains tested (as seen in tables 2.5)<br />

and in the formation <strong>of</strong> a more adherent bi<strong>of</strong>ilm. Due to this deviation <strong>of</strong><br />

bi<strong>of</strong>ilm removal the LT2 strain was excluded from statistical analysis.<br />

The results demonstrate that there is a substantial range <strong>of</strong> intra-strain<br />

variation between the bi<strong>of</strong>ilm cell density values achieved through<br />

repeated measures (indicated in the respective tables through the use <strong>of</strong><br />

SD values). Variation between repeated experiments has also been<br />

discussed elsewhere [117, 171, 183]. The variation <strong>of</strong> results is a widely<br />

recognised limitation <strong>of</strong> the biological process with variables such as room<br />

temperature, humidity and slight variation in manual procedures (such as<br />

bi<strong>of</strong>ilm removal and enumeration) contributing to the variation in repeated<br />

tests. The same level <strong>of</strong> variation has also been reported elsewhere using<br />

the CBR method [72, 117, 124].<br />

Page 85

Hooray! Your file is uploaded and ready to be published.

Saved successfully!

Ooh no, something went wrong!