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Bibliography 12. T. Takata, J.L., H. Nakano, and Y. Yoshimura, Invasion of Salmonella Enteritidis in the Tissues of Reproductive Organs in Laying Japanese Quail: An Immunocytochemical Study. 2003. Poultry Science. 82:(7): 1170–1173. 13. ESFA, Opinion of the Scientific Panel on Biological Hazards on the request from the Commission related to the Microbiological Risks on Washing of Table Eggs. 2005. The EFSA Journal. 269: 1-39. 14. ESFA, The European Union Summary Report on Trends and Sources of Zoonoses, Zoonotic Agents and Food-borne Outbreaks in 2009. 2011. The EFSA Journal. 9(3): 2090. 15. Habrun, B., Listes, E., Spicic, S., Cvetnic, Z., Lukacevic, D., Jemersic, L., Lojkic, M. and Kompes, G., An Outbreak of Salmonella Abortusovis Abortions in Sheep in South Croatia. 2006. Journal of Veterinary Medicine, Series B. 53(6): 286-290. 16. Akiba, M., Uchida, I., Nishimori, K, Tanaka, K., Anzai, T., Kuwamoto, Y., Wada, R., Ohya, T. and Ito, H., Comparison of Salmonella enterica serovar Abortusequi isolates of equine origin by pulsed-field gel electrophoresis and fluorescent amplified-fragment length polymorphism fingerprinting. 2003. Veterinary Microbiology. 92(4): 379-388. 17. CDC (2011) National Enteric Disease Surveillance: Salmonella Surveillance Overview. 18. De Lappe, N., Doran, G., O'Connor, J., O'Hare, C., and Cormican, M., Characterization of bacteriophages used in the Salmonella enterica serovar Enteritidis phage-typing scheme. 2009. Journal of Medical Microbiology. 58(1): 86-93. 19. Rabsch, W., et al., Salmonella enterica Serotype Typhimurium and Its Host-Adapted Variants. 2002. Infection and Immunity. 70(5): 2249-2255. 20. Fisher I. S., et al. Dramatic shift in the epidemiology of Salmonella enterica serotype Enteritidis phage types in western Europe, 1998- Page 223
Bibliography 2003--results from the Enter-net international salmonella database. 2004. Euro Surveill. 11: 43-45. 21. Rabsch, W., et al., Molecular Epidemiology of Salmonella enterica Serovar Agona: Characterization of a Diffuse Outbreak Caused by Aniseed-Fennel-Caraway Infusion. 2005. Epidemiology and Infection. 133(5): 837-844. 22. Threlfall, E.J., et al., Epidemic Salmonella Typhimurium DT 104—a truly international multiresistant clone. 2000. Journal of Antimicrobial Chemotherapy. 46(1): 7-10. 23. Wattiau, P., C. Boland, and S. Bertrand, Methodologies for Salmonella enterica subsp. enterica Subtyping: Gold Standards and Alternatives. 2011. Applied and Environmental Microbiology. 77(22): 7877-7885. 24. Achtman, M., Wain, J., Weill, F-X., Nair, S., Zhou, Z., Sangal, V., Krauland, M., Hale, J., Harbottle, H, Uesbeck, A., Dougan, G., Harrison, L., Brisse, S., the S. enterica MLST study group, Multilocus Sequence Typing as a Replacement for Serotyping in Salmonella enterica. 2012. PLoS Pathog. 8(6): e1002776. 25. Olson, A., et al., Limited genetic diversity in Salmonella enterica Serovar Enteritidis PT13. 2007. BMC Microbiology. 7(1): 87. 26. Martino, M., Fasolato, L., Montemurro, F., Rosteghin, M., Manfrin, A., Patarnello, T., Novelli, E., Cardazzo, B, Determination of Microbial Diversity of Aeromonas Strains on the Basis of Multilocus Sequence Typing, Phenotype, and Presence of Putative Virulence Genes. 2011. Applied and Environmental Microbiology. 77(14): 4986-5000. 27. Porwollik, S., Salmonella From Genome to Function. Castier Academic Press. 2011, Norfolk, UK: Castier Academic Press. 28. Steenackers, H., et al., Salmonella biofilms: An overview on occurrence, structure, regulation and eradication. 2012. Food Research International. 45(2): 502-531. Page 224
Page 1:
Salmonella enterica - biofilm forma
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Table of Contents Page Number 1.16.
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Table of Contents Page Number 4.1.2
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Table of Contents Page Number 6.8.4
Page 10 and 11:
List of Abbreviations Table Page Nu
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List of Abbreviations List of Abbre
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Summary of Content Summary of Conte
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“To show your true ability is alw
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Acknowledgements ever met, Fiona th
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Acknowledgements This Ph.D. thesis
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Chapter 1 1.1. Salmonella Salmonell
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Chapter 1 may impose enormous costs
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Chapter 1 cracks or penetration of
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Chapter 1 detected by agglutination
Page 30 and 31:
Chapter 1 become colonized with >10
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Chapter 1 antigens [z27],[z45] [1].
Page 34 and 35:
Chapter 1 S. Agona has also been im
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Chapter 1 isolated from undercooked
Page 38 and 39:
Chapter 1 The S. Typhimurium strain
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Chapter 1 ecosystem with the use of
Page 42 and 43:
Chapter 1 [82]. Previous research h
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Chapter 1 to genes involved in flag
Page 46 and 47:
Chapter 1 observation has also been
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Chapter 1 [119] and flow cell react
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Chapter 1 based disinfectant) the s
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Chapter 1 formation of two strains
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Chapter 1 shield the S. Agona cells
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Chapter 1 Key Objectives of this st
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Chapter 2 2. Abstract Food-borne pa
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Chapter 2 indicated that there may
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Chapter 2 taken from industrial set
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Chapter 2 2.1.4. CDC Biofilm Reacto
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Chapter 2 can be performed without
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Chapter 2 To summarise, previous au
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Chapter 2 2.3. Methods for examinin
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Chapter 2 and the biofilm formed th
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Chapter 2 2.4. Statistical Analysis
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Chapter 2 Table 2.1: Strain charact
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Chapter 2 XII. The gas port and med
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Chapter 2 II. Primary fixative cons
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Chapter 2 IX. Once the conditions w
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Chapter 2 Figure 2.1: Image of CBR
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Chapter 2 2.6. Results 2.6.1. Asses
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Chapter 2 2.6.3. SEM Analysis of su
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Chapter 2 Figure 2.6: Complete remo
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Chapter 2 2.6.5. Mean log 10 densit
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Chapter 2 2.6.6. Mean log 10 densit
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Chapter 2 Table 2.5: Mean log 10 de
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Chapter 2 The results displayed in
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Chapter 2 Table 2.7: Difference bet
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Chapter 2 Table 2.8: The mean log 1
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Chapter 2 Figure 2.7: Graph of the
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Chapter 2 also used “high” soni
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Chapter 2 2.8. Summary All 13 strai
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Chapter 3 3. Abstract It has been e
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Chapter 3 classified as persistent
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Chapter 3 was plated onto TSA for e
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Chapter 3 Figure 3.1: The mean log
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Chapter 3 Figure 3.3: SEM image of
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Chapter 3 Table 3.2: Difference bet
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Chapter 3 3.4.3. Intra-serovar vari
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Chapter 3 3.4.4. Strain variation i
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Chapter 3 3.4.5. The density of bio
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Chapter 3 3.5. Discussion As illust
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Chapter 3 As discussed in section 3
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Chapter 3 increased biofilm appeare
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Chapter 4 Examining the efficacy of
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Chapter 4 through laboratory based
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Chapter 4 acid and quaternary ammon
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Chapter 4 the surface the temperatu
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Chapter 4 availability of multiple
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Chapter 4 peracetic acid (100, 200,
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Chapter 4 As discussed previously,
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Chapter 4 Dey/Engley (Difco) neutra
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Chapter 4 sterilisation was achieve
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Chapter 4 IX. Aliquots of 100µl of
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Chapter 4 XV. XVI. XVII. XVIII. XIX
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Chapter 4 4.3. Results 4.3.1. Suspe
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Chapter 4 Table 4.3: Mean log 10 de
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Chapter 4 Benzalkonium chloride was
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Chapter 4 4.4. Discussion Suspensio
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Chapter 4 effective at eliminating
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Chapter 4 Surprisingly, Nguyen et a
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Chapter 4 though a contact time of
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Chapter 4 provide a more standardis
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Chapter 4 hours instead of the stan
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Chapter 5 5. Abstract Examining bio
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Chapter 5 dry and rough (bdar) morp
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Chapter 5 absence of curli and cell
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Chapter 5 studies such as the micro
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Chapter 5 discussed in chapter 4. T
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Chapter 5 5.2. Methods 5.2.1. Colon
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Chapter 5 XIII. XIV. XV. XVI. XVII.
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Chapter 5 XVI. XVII. XVIII. XIX. XX
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Chapter 5 5.3.2. Repeatability of m
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Chapter 5 Figure 5.2: Stained biofi
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Page 196 and 197: Chapter 5 Table 5.3: The density of
Page 198 and 199: Chapter 5 5.3.4. The density of bio
Page 200 and 201: Chapter 5 Table 5.6: The difference
Page 202 and 203: Chapter 5 Table 5.7: The difference
Page 204 and 205: Chapter 5 Table 5.8: Summary of ass
Page 206 and 207: Chapter 5 interpretation therefore
Page 208 and 209: Chapter 5 measures of S. enterica b
Page 210 and 211: Chapter 5 cells peaks [165, 191]. D
Page 212 and 213: Chapter 5 5.5. Limitations of the s
Page 214 and 215: Chapter 6 Discussion of S. enterica
Page 216 and 217: Chapter 6 However, a number of auth
Page 218 and 219: Chapter 6 It is of interest to exam
Page 220 and 221: Chapter 6 were similar at 48 hours.
Page 222 and 223: Chapter 6 attributable to a small n
Page 224 and 225: Chapter 6 chosen as an appropriate
Page 226 and 227: Chapter 6 undetermined. However, th
Page 228 and 229: Chapter 6 reason for this may be du
Page 230 and 231: Chapter 6 Moreover, based on the re
Page 232 and 233: Chapter 6 responsible for increased
Page 234 and 235: Chapter 6 not fully capture the ran
Page 236 and 237: Chapter 6 However, the extent of bi
Page 238 and 239: Chapter 6 6.10. Conclusions and rec
Page 240 and 241: Chapter 6 studies may solve some of
Page 242 and 243: Bibliography Bibliography Page 221
Page 246 and 247: Bibliography 29. Barker, J., M. Nae
Page 248 and 249: Bibliography 47. Threlfall, E.J., H
Page 250 and 251: Bibliography 65. CDC. Investigation
Page 252 and 253: Bibliography 83. Ledeboer, N., Frye
Page 254 and 255: Bibliography 100. Chia, T., Goulter
Page 256 and 257: Bibliography 117. Buckingham-Meyer,
Page 258 and 259: Bibliography 133. European Committe
Page 260 and 261: Bibliography Supernatant of a Hafni
Page 262 and 263: Bibliography 165. Díez-García, M.
Page 264 and 265: Bibliography cultivation of Staphyl
Page 266 and 267: Bibliography Compounds. 2012. Appli
Page 268 and 269: Bibliography 215. Buck, et al., A q
Page 270 and 271: Bibliography Canadian Journal of Ps
Page 272 and 273: Appendix 1 Appendix 1— List of Re
Page 274 and 275: Appendix 1 Appendix 1 - List of Equ
Page 276 and 277: Appendix 2 Colour index High outlie
Page 286 and 287: Appendix 3 Appendix 3-Figure 2: PFG
Page 288 and 289: Appendix 4 Poster Presentation Envi
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