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View/Open - ARAN - National University of Ireland, Galway

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Table <strong>of</strong> Contents<br />

Page Number<br />

1.16.2. Methods for evaluating the efficacy <strong>of</strong> disinfectants 29<br />

against Salmonella bi<strong>of</strong>ilm<br />

1.16.3. Effect <strong>of</strong> age <strong>of</strong> bi<strong>of</strong>ilm on cell recovery 32<br />

Key Objectives <strong>of</strong> this study 35<br />

Chapter 2-Assessing the density <strong>of</strong> a 48 hour S. enterica bi<strong>of</strong>ilm<br />

established using the CDC bi<strong>of</strong>ilm reactor<br />

2.1. Introduction 37<br />

2.1.1. Surface differences 38<br />

2.1.2. Strains/Serovars 40<br />

2.1.3. Origin <strong>of</strong> strains 40<br />

2.1.4. CDC Bi<strong>of</strong>ilm Reactor 43<br />

2.1.5. Advantages and Disadvantages <strong>of</strong> the CBR 43<br />

2.1.6. Reproducibility <strong>of</strong> bi<strong>of</strong>ilm studies using the CBR 45<br />

2.2. Examining bi<strong>of</strong>ilm density and reproducibility using 47<br />

other bi<strong>of</strong>ilm reactor models<br />

2.3. Methods for examining bi<strong>of</strong>ilm density and substrata 49<br />

2.3.1. Atomic Force Microscopy 49<br />

2.3.2. Scanning Electron Microscopy (SEM) 49<br />

2.3.3. Other methods for examining and enumerating bi<strong>of</strong>ilm 50<br />

cells<br />

2.3.4. Sonication as a method <strong>of</strong> removal for enumeration 51<br />

2.4. Statistical Analysis 53<br />

2.5. Methods 56<br />

2.5.1. 48 hour bi<strong>of</strong>ilm development model 56<br />

2.5.2. Scanning Electron Microscopy 58<br />

2.5.2.1. Primary and Secondary 58<br />

2.5.2.2. Gold Coating Samples 59<br />

2.5.2.3. SEM Analysis 60<br />

2.5.3. AFM Analysis 61<br />

2.5.4. Validation <strong>of</strong> removal techniques 62<br />

2.6. Results 65<br />

2.6.1. Assessment <strong>of</strong> Quality control experiments 65<br />

2.6.2. Scanning Electron Microscopy 66<br />

2.6.3. SEM analysis <strong>of</strong> surfaces to confirm bi<strong>of</strong>ilm removal via 67<br />

sonication.<br />

2.6.4. Mean log 10 density <strong>of</strong> S. enterica bi<strong>of</strong>ilm 70<br />

iii

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