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View/Open - ARAN - National University of Ireland, Galway

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Chapter 1<br />

ecosystem with the use <strong>of</strong> microscopy, it was deduced that 99.9% <strong>of</strong> the<br />

bacteria assessed grew in a bi<strong>of</strong>ilm on a range <strong>of</strong> surfaces [69].<br />

The formation and structure <strong>of</strong> a bi<strong>of</strong>ilm is influenced by numerous<br />

variables including species [70], surface [71], nutrients available [32, 72]<br />

and other environmental conditions [73]. The bi<strong>of</strong>ilm development process<br />

is initiated with single cells attaching to a surface or to each other, this is<br />

then followed by the formation <strong>of</strong> clustered cells or microcolonies [74].<br />

Over time, the microcolonies are surrounded by a protective layer <strong>of</strong><br />

protein-rich substances referred to as extracellular polymeric substances<br />

(EPS). As the bi<strong>of</strong>ilm grows the bi<strong>of</strong>ilm matrix develops water channels that<br />

act as a support system to provide nutrients to the less exposed areas <strong>of</strong><br />

the bi<strong>of</strong>ilm and act as a route for waste disposal [74].<br />

Previous research has suggested that almost all bacteria can form a bi<strong>of</strong>ilm<br />

and that once the transition from planktonic cells to their bi<strong>of</strong>ilm state is<br />

initiated, this becomes the optimum form for the bacterial cells existence<br />

[75]. It is also reported that single-species bacteria can be heterogeneous<br />

in their nature, with each group <strong>of</strong> cells undertaking a different role in the<br />

bi<strong>of</strong>ilm development depending on environmental cues such as availability<br />

<strong>of</strong> oxygen. The cells <strong>of</strong> a single species within a bacterial culture may<br />

display differences in metabolism, gene expression, morphology and<br />

physiology allowing it to work well within its community, depending on it<br />

spatial relationship in the bi<strong>of</strong>ilm matrix [76]. For example, a bacterial cell<br />

embedded in the bi<strong>of</strong>ilm matrix may survive on less nutrients and lower<br />

oxygen gradients by going into a dormant state [75].<br />

Page<br />

19

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