Coordinated regulation of gene expression by E ... - Jacobs University
Coordinated regulation of gene expression by E ... - Jacobs University
Coordinated regulation of gene expression by E ... - Jacobs University
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APPENDIX I<br />
<strong>gene</strong> blattner ratio p-value Function<br />
A/B<br />
proV b2677 0.4218 0.1799 proline ABC transporter<br />
puuC b1300 1.6935 0.1184 aldehyde dehydrogenase<br />
pykA b1854 0.7604 0.0838 pyruvate kinase II monomer<br />
pyrB b4245 1.1503 0.1874 aspartate carbamoyltransferase, PyrB subunit<br />
rbsC b3750 0.6695 0.0468 ribose ABC transporter<br />
recA b2699 0.3452 0.1832<br />
DNA strand exchange and renaturation, DNA-dependent ATPase, DNA- and ATPdependent<br />
coprotease<br />
relA b2784 1.2742 0.1110 GDP pyrophosphokinase / GTP pyrophosphokinase<br />
rfe b3784 1.3370 0.2082 undecaprenyl-phosphate α-N-acetylglucosaminyl transferase<br />
rluF b4022 1.3140 0.1201 23S rRNA pseudouridine synthase<br />
rusA b0550 1.4113 0.1436 endodeoxyribonuclease RUS (Holliday junction resolvase)<br />
serB b4388 0.7904 0.0773 phosphoserine phosphatase<br />
sieB b1353 0.8383 0.1178 phage superinfection exclusion protein<br />
slp b3506 0.4025 0.1450 outer membrane protein induced after carbon starvation<br />
sra b1480 1.6764 0.1726<br />
30S ribosomal subunit protein S22; sub-stoichiometric stationary phase ribosomal<br />
component<br />
srlB b2704 1.2552 0.1276 GutB<br />
tdcD b3115 0.1894 0.1458 propionate kinase / acetate kinase C<br />
tfaS b2353 1.2824 0.0709 hypothetical protein<br />
thiC b3994 0.9357 0.1591 thiC protein<br />
thiE b3993 1.2669 0.1306 thiamine phosphate synthase<br />
thiL b0417 1.2068 0.0179 thiamine phosphate kinase<br />
torY b1873 0.4910 0.1241 trimethylamine N-oxide reductase III, c-type cytochrome subunit<br />
torZ b1872 0.5350 0.0783 trimethylamine N-oxide reductase III, TorZ subunit<br />
trmE b3706 1.3641 0.0940 GTP-binding protein with a role in modification <strong>of</strong> tRNA<br />
udk b2066 1.1984 0.1082 uridine kinase / cytidine kinase<br />
uppP b3057 0.9220 0.0886 undecaprenyl diphosphatase; bacitracin resistance<br />
uxuA b4322 1.5879 0.1280 mannonate dehydratase<br />
xapB b2406 0.7826 0.0813 XapB xanthosine MFS transporter<br />
xylH b3568 0.2488 0.1621 xylose ABC transporter<br />
xylR b3569 0.5185 0.1010 XylR-Xylose transcriptional activator<br />
ybbV b0510 0.8643 0.0029 hypothetical protein<br />
ybgH b0709 1.2353 0.1593 YbgH peptide POT Transporter<br />
ycbY b0948 1.4626 0.2285 putative methyltransferase<br />
yccA b0970 0.8900 0.1984<br />
putative carrier/transport protein; substrate or modulator <strong>of</strong> FtsH-mediated<br />
proteolysis<br />
yccU b0965 1.6297 0.1818 putative NAD(P)-binding enzyme<br />
yceH b1067 0.7620 0.2327 conserved hypothetical protein<br />
ycgH_1 b1169 0.3656 0.1003 conserved protein; member <strong>of</strong> the Autotransporter family<br />
ycgV b1202 0.5050 0.0863 putative adhesion and penetration protein<br />
yciQ b1268 1.0958 0.0693 putative membrane protein<br />
ycjS b1315 1.2033 0.2091 putative galactose 1-dehydrogenase<br />
ycjX b1321 0.8771 0.2180 putative EC 2.1 enzyme<br />
ydaV b1360 1.2315 0.1919 putative DNA replication factor<br />
ydcF b1414 1.3872 0.0086 conserved hypothetical protein<br />
ydcL b1431 1.3586 0.0134 conserved hypothetical protein<br />
YdgF b1600 0.4729 0.0174 YdgF SMR protein; toxin <strong>of</strong> a putative toxin-antitoxin pair<br />
ydgR b1634 1.3701 0.0111 YdgR putative peptide POT Transporter<br />
ydiQ b1697 0.7378 0.0072 putative subunit <strong>of</strong> YdiQ-YdiR flavoprotein<br />
ydjI b1773 0.6874 0.0303 putative aldolase<br />
yeaC b1777 1.2788 0.0410 conserved hypothetical protein<br />
yegK b2072 0.7214 0.0032 conserved hypothetical protein<br />
yegS b2086 1.2631 0.0064 conserved protein<br />
yeiC b2166 0.3541 0.2324 putative kinase<br />
yfdT b2363 1.1129 0.0883 hypothetical protein<br />
yfeX b2431 0.7909 0.0108 conserved protein<br />
yfiP b2583 0.7684 0.0969 conserved hypothetical protein<br />
106