Coordinated regulation of gene expression by E ... - Jacobs University
Coordinated regulation of gene expression by E ... - Jacobs University
Coordinated regulation of gene expression by E ... - Jacobs University
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APPENDIX I<br />
<strong>gene</strong> blattner ratio p-value Function<br />
A/B<br />
rumB b0859 2.8430 0.0229 23S ribosomal RNA 5-methyluridine methyltransferase<br />
rzpR b1362 0.3718 0.0295 putative prophage lambda endopeptidase<br />
serC b0907 0.8655 0.0233 phosphohydroxythreonine transaminase / phosphoserine transaminase<br />
sfmF b0534 1.5761 0.0050 putative fimbrial-like protein<br />
sfsB b3188 0.6211 0.0341 Nlp transcriptional regulator<br />
sgbU b3582 0.4728 0.0465 probable 3-hexulose-6-phosphate isomerase<br />
sgcR b4300 0.7052 0.0469 SgcR transcriptional regulator<br />
sieB b1353 0.6826 0.0164 phage superinfection exclusion protein<br />
slp b3506 0.2794 0.0041 outer membrane protein induced after carbon starvation<br />
sra b1480 0.3405 0.0369<br />
30S ribosomal subunit protein S22; sub-stoichiometric stationary phase ribosomal<br />
component<br />
ssuC b0934 1.3094 0.0450 YcbE/YcbM ABC transporter<br />
stpA b2669 0.2394 0.0352 DNA-binding protein; H-NS-like protein; chaperone activity; RNA splicing?<br />
sufA b1684 2.2615 0.0121 scaffold protein for iron-sulfur cluster assembly<br />
sufC b1682 2.6029 0.0111<br />
ATPase component <strong>of</strong> SufB-SufC-SufD cysteine desulfurase (SufS) activator<br />
complex<br />
tar b1886 5.6716 0.0475 MCP-II<br />
tatD b4483 1.8518 0.0203 magnesium-dependent DNase<br />
tauA b0365 0.3175 0.0372 TauA/TauB/TauC ABC transporter<br />
tdcC b3116 0.1433 0.0075 TdcC threonine STP transporter<br />
tdcD b3115 0.4925 0.0458 propionate kinase / acetate kinase C<br />
tgt b0406 0.7951 0.0462 tRNA-guanine transglycosylase monomer<br />
thiD b2103 0.7993 0.0109 hydroxymethylpyrimidine kinase 2 / HMP-P kinase<br />
tnaA b3708 0.0673 0.0163 L-cysteine desulfhydrase / tryptophanase<br />
tolB b0740 1.3875 0.0321 Tol-Pal Cell Envelope Complex<br />
trpD b1263 1.2758 0.0363 anthranilate synthase component II<br />
tsr b4355 2.6861 0.0245 MCP-I<br />
ttdB b3062 0.7602 0.0085 L-tartrate dehydratase, beta subunit<br />
ubiC b4039 1.5219 0.0401 chorismate pyruvate lyase<br />
ugd b2028 0.1087 0.0032 UDP-glucose 6-dehydrogenase<br />
ung b2580 1.1711 0.0157 uracil-DNA-glycosylase<br />
uvrB b0779 1.5839 0.0266 DNA repair; excision nuclease subunit B<br />
uvrC b1913 0.6579 0.0189 excinuclease ABC, subunit C; repair <strong>of</strong> UV damage to DNA<br />
uvrY b1914 0.5041 0.0474 UvrY- Phosphorylated transcriptional regulator<br />
wcaA b2059 0.5870 0.0415 putative regulator<br />
wcaC b2057 0.5717 0.0358 putative glycosyl transferase<br />
wcaD b2056 0.0530 0.0169 putative colanic acid polymerase<br />
wcaE b2055 0.1901 0.0098 putative colanic acid biosynthesis glycosyl transferase<br />
wcaF b2054 0.1153 0.0195 putative transferase<br />
wcaM b2043 0.3407 0.0472 hypothetical protein<br />
wzc b2060 0.3446 0.0355 tyrosine kinase involved in colanic acid biosynthesis<br />
wzxE b3792 1.8477 0.0010<br />
metabolism; biosynthesis <strong>of</strong> macromolecules (cellular constituents);<br />
enterobacterial common antigen (surface glycolipid) transport<br />
wzyE b3793 1.4866 0.0048 4-α-fucosyltransferase<br />
xapR b2405 0.1931 0.0064 XapR transcriptional activator<br />
xerC b3811 1.4882 0.0457<br />
site-specific recombinase, acts on cer sequence <strong>of</strong> ColE1, effects chromosome<br />
segregation at cell division<br />
xseA b2509 1.6165 0.0433 exonuclease VII, large subunit<br />
xylB b3564 0.4772 0.0249 xylulokinase<br />
xylF b3566 0.5971 0.0345 xylose ABC transporter<br />
yaaY b0024 2.2168 0.0034 hypothetical protein<br />
yabP b0056 0.6871 0.0260 conserved hypothetical protein<br />
yadD b0132 1.2444 0.0248 hypothetical protein<br />
yadL b0137 0.2804 0.0369 putative adhesin-like protein<br />
yafD b0209 1.4135 0.0200 conserved hypothetical protein<br />
yafJ b0223 0.6082 0.0284 putative amidotransferase<br />
yafS b0213 1.4431 0.0410 putative methyltransferase<br />
yagG b0270 0.5001 0.0099 YagG GPH Transporter<br />
183