Coordinated regulation of gene expression by E ... - Jacobs University

More documents

Recommendations

Info

APPENDIX I gene blattner ratio p-value Function A/B ydjL b1776 0.6122 0.0341 putative oxidoreductase yeaG b1783 0.4721 0.0039 conserved protein yeaJ b1786 0.4354 0.0260 putative membrane protein yebN b1821 0.2184 0.0221 putative membrane protein, terpenoid synthase-like yebW b1837 1.6464 0.0240 hypothetical protein yecR b1904 3.4357 0.0288 conserved hypothetical protein yedS_2 b1965 0.2584 0.0387 putative outer membrane protein yedS_3 b1966 0.2391 0.0482 putative outer membrane protein yedV b1968 0.1575 0.0161 putative 2-component sensor protein yeeE b2013 1.3107 0.0382 putative transport system permease protein yeeN b1983 0.3367 0.0153 conserved protein yegJ b2071 0.2035 0.0169 hypothetical protein yehT b2125 0.5225 0.0364 two-component response regulator yeiS b2145 0.4474 0.0138 hypothetical protein yfaL b2233 1.3955 0.0170 potential adhesin yfaO b2251 0.4117 0.0366 putative enzyme (Nudix hydrolase) yfbE b2253 0.2945 0.0149 UDP-L-Ara4O C-4" transaminase yfbN b2273 0.1982 0.0195 conserved hypothetical protein yfcI b2305 0.5760 0.0448 hypothetical protein yfcV b2339 0.1962 0.0324 putative fimbrial-like protein yfdP b2359 0.7302 0.0446 hypothetical protein yfdZ b2379 1.3458 0.0451 putative aminotransferase yfeD b2399 0.6741 0.0159 hypothetical protein yfeX b2431 1.2507 0.0360 conserved protein yffB b2471 0.3893 0.0112 conserved thioredoxin-like protein yfgH b2505 0.1761 0.0294 putative outer membrane lipoprotein yfiR b2603 0.5716 0.0344 conserved protein yfjH b2623 0.5403 0.0467 putative histone yfjK b2627 0.5869 0.0193 hypothetical protein ygbE b2749 2.2898 0.0383 putative cytochrome oxidase subunit ygbT b2755 0.3143 0.0043 conserved hypothetical protein ygcF b2777 0.4973 0.0417 hypothetical protein ygcI b2757 0.0520 0.0045 hypothetical protein ygcJ b2758 0.4560 0.0338 conserved hypothetical protein ygcK b2759 0.0541 0.0086 hypothetical protein ygcL b2760 0.0966 0.0050 hypothetical protein with possible relationship to novobiocin and deoxycholate resistance ygdI b2809 1.7669 0.0042 hypothetical protein ygdL b2812 1.7338 0.0474 putative enzyme ygeO b2859 0.7191 0.0320 conserved protein yggP b2931 0.4937 0.0082 putative NAD(P)-binding dehydrogenase (B2931) yghQ b2983 1.6030 0.0092 putative serine protease yghS b2985 0.3944 0.0088 conserved protein ygiL b3043 0.0454 0.0037 putative fimbrial-like protein ygiR b3015 2.2378 0.0114 ygiU b3022 1.4623 0.0263 putative cyanide hydratase yhbW b3160 1.3420 0.0364 putative enzyme yhcA b3215 0.4083 0.0170 putative chaperone yhdX b3269 0.4868 0.0189 YhdW/YhdX/YhdY/YhdZ ABC transporter yhfL b3369 0.2237 0.0277 hypothetical protein yhhH b3483 0.5665 0.0435 hypothetical protein yhhI b3484 0.2639 0.0294 conserved protein similar to H-repeat-associated proteins yhiP b3496 1.4822 0.0076 YhiP peptide POT transporter yhjB b3520 0.5360 0.0254 putative regulator yhjR b3535 0.3791 0.0427 hypothetical protein yhjX b3547 0.4577 0.0155 YhjX MFS transporter yiaA b3562 0.2225 0.0295 hypothetical protein 185
APPENDIX I gene blattner ratio p-value Function A/B yiaN b3578 0.3218 0.0405 YiaMNO Binding Protein-dependent Secondary (TRAP) Transporter yiaT b3584 0.3228 0.0018 putative outer membrane protein yiaU b3585 0.2708 0.0129 putative transcriptional regulator LYSR-type yiaV b3586 0.6530 0.0169 putative membrane protein yiaW b3587 0.1805 0.0226 hypothetical protein yibA b3594 0.2554 0.0369 putative lyase yibI b3598 1.5678 0.0042 hypothetical protein yibJ b3595 0.4409 0.0364 hypothetical protein yifK b3795 1.6627 0.0041 YifK APC transporter yiiS b3922 0.2877 0.0426 conserved hypothetical protein yjbE b4026 0.2320 0.0056 conserved hypothetical protein yjdI b4126 0.3844 0.0223 conserved hypothetical protein yjeJ b4145 0.1947 0.0001 conserved protein yjfJ b4182 0.4165 0.0368 conserved protein yjfO b4189 0.6287 0.0167 conserved protein yjgA b4234 1.4336 0.0306 putative transport protein (ABC superfamily, atp_bind) yjgM b4256 0.3526 0.0092 putative acyltransferase yjhF b4296 0.3026 0.0290 YjhF Gnt tranporter yjhG b4297 0.3862 0.0320 putative dehydratase yjhH b4298 0.1447 0.0289 putative lyase/synthase yjhI b4299 0.1010 0.0196 putative regulator yjiW b4347 0.3016 0.0341 hypothetical protein yjjQ b4365 0.5375 0.0405 putative regulator yjjY b4402 1.8482 0.0252 hypothetical protein ykfF b0249 1.4653 0.0173 hypothetical protein ykgA b0300 0.3332 0.0455 putative ARAC-type regulatory protein ykgB b0301 0.4130 0.0197 putative membrane protein ykgF b0307 0.0923 0.0096 putative dehydrogenase ykgI b0303 0.1914 0.0271 hypothetical protein ykgK b0294 0.3670 0.0464 putative regulator ykiA b0392 0.4606 0.0100 hypothetical protein yliF b0834 0.5389 0.0387 conserved protein ymgD b1171 0.2996 0.0307 hypothetical protein ynaE b1375 0.1454 0.0051 hypothetical protein ynaI b1330 0.4059 0.0015 YnaI ynaK b1365 0.2128 0.0235 hypothetical protein yncC b1450 0.7923 0.0469 hypothetical protein yncD b1451 4.6042 0.0276 Probable TonB-dependent receptor yncI b1458 0.2616 0.0295 conserved protein ynfN b1551 0.1250 0.0013 hypothetical protein ynjF b1758 1.9527 0.0260 putative cytochrome oxidase ynjI b1762 0.6095 0.0436 conserved protein yoaC b1810 0.5329 0.0343 conserved hypothetical protein yobF b1824 0.2197 0.0180 hypothetical protein yodA b1973 0.3883 0.0353 cadmium-induced metal binding protein yohL b2105 0.8820 0.0341 conserved hypothetical protein yojI b2211 2.6739 0.0227 YojI ypfJ b2475 1.7103 0.0293 conserved protein ypjF b2646 1.7408 0.0282 member of the YeeV, YkfI, YpjF family of toxin proteins yqcC b2792 1.1876 0.0346 conserved hypothetical protein yqeI b2847 0.3092 0.0385 putative sensory transducer yqhC b3010 1.5425 0.0156 putative ARAC-type regulatory protein yqjF b3101 1.9399 0.0112 putative membrane protein yraH b3142 0.4222 0.0010 putative fimbrial-like protein yraQ b3151 1.7555 0.0334 putative membrane protein yrdD b3283 0.8037 0.0413 putative DNA topoisomerase 186
Page 1 and 2:
Coordinated regulation of gene expr
Page 3 and 4:
Parts of this work has been publish
Page 5 and 6:
ABSTRACT promoter region determines
Page 7 and 8:
ACKNOWLEDGEMENTS first impression o
Page 9 and 10:
TABLE OF CONTENTS 2.2.5 Preparation
Page 11 and 12:
LIST OF TABLES List of tables Table
Page 13 and 14:
LIST OF FIGURES List of Figures Fig
Page 15 and 16:
ABBREVIATIONS Abbreviations ∆61
Page 17 and 18:
ABBREVIATIONS TBE Tris TS tyrT35U t
Page 19 and 20:
INTRODUCTION Salmonella: “In more
Page 21 and 22:
INTRODUCTION Figure 1: Schematic il
Page 23 and 24:
INTRODUCTION UP element -35 -10 Spa
Page 25 and 26:
INTRODUCTION can also influence elo
Page 27 and 28:
INTRODUCTION have more base-pairs t
Page 29 and 30:
INTRODUCTION Figure 6: Graphical re
Page 31 and 32:
INTRODUCTION shown that H-NS reache
Page 33 and 34:
INTRODUCTION formed as a repercussi
Page 35 and 36:
MATERIALS AND METHODS 2 Materials a
Page 37 and 38:
MATERIALS AND METHODS NaCl 10 gm YT
Page 39 and 40:
MATERIALS AND METHODS LZ41 3 pyrF28
Page 41 and 42:
MATERIALS AND METHODS 2.2 Methods 2
Page 43 and 44:
MATERIALS AND METHODS given using a
Page 45 and 46:
MATERIALS AND METHODS phenol: chlor
Page 47 and 48:
MATERIALS AND METHODS Filtered (by
Page 49 and 50:
MATERIALS AND METHODS free water (A
Page 51 and 52:
RESULTS 3 Results Growth phase-depe
Page 53 and 54:
RESULTS Neither the fis nor the hns
Page 55 and 56:
RESULTS these identified genes (by
Page 57 and 58:
RESULTS furthermore the colour of t
Page 59 and 60:
RESULTS During the entire growth cy
Page 61 and 62:
RESULTS transcripts of a growth pha
Page 63 and 64:
RESULTS phosphorylation, are associ
Page 65 and 66:
RESULTS Table 4: RT-PCR analysis of
Page 67 and 68:
RESULTS Figure 16: Schematic repres
Page 69 and 70:
RESULTS parC) which allows the supe
Page 71 and 72:
RESULTS Figure 19: In vitro transcr
Page 73 and 74:
RESULTS contrast the tyrTD promoter
Page 75 and 76:
DISCUSSION 4 Discussion The idea of
Page 77 and 78:
DISCUSSION In a study by Balke & Gr
Page 79 and 80:
DISCUSSION cells maintain viability
Page 81 and 82:
DISCUSSION writhe in the UAS by FIS
Page 83 and 84:
DISCUSSION 4.3.2 Mechanism of trans
Page 85 and 86:
CONCLUSION 5 Conclusion Regulation
Page 87 and 88:
REFERENCES Bordes, P., Conter, A.,
Page 89 and 90:
REFERENCES Gruber, T.M., and Gross,
Page 91 and 92:
REFERENCES molecular basis for sele
Page 93 and 94:
REFERENCES Pan, C.Q., Finkel, S.E.,
Page 95 and 96:
REFERENCES Schroder, O., and Wagner
Page 97 and 98:
REFERENCES Willenbrock, H., and Uss
Page 99 and 100:
APPENDIX I gene blattner ratio p-va
Page 101 and 102:
Page 103 and 104:
Page 105 and 106:
Page 107 and 108:
Page 109 and 110:
Page 111 and 112:
Page 113 and 114:
Page 115 and 116:
Page 117 and 118:
Page 119 and 120:
Page 121 and 122:
Page 123 and 124:
Page 125 and 126:
Page 127 and 128:
APPENDIX I Supplementary table - VI
Page 129 and 130:
APPENDIX I fabB b2323 0.6336 0.0043
Page 131 and 132:
APPENDIX I ibpA b3687 2.4960 0.0181
Page 133 and 134:
APPENDIX I pepP b2908 1.2182 0.0368
Page 135 and 136:
APPENDIX I speG b1584 0.4151 0.0001
Page 137 and 138:
APPENDIX I ycjX b1321 4.0841 0.0141
Page 139 and 140:
APPENDIX I yhfY b3382 1.4063 0.0453
Page 141 and 142:
Page 143 and 144:
Page 145 and 146:
Page 147 and 148:
Page 149 and 150:
Page 151 and 152: APPENDIX I gene blattner ratio p-va
Page 157 and 158: APPENDIX I gene blattner ratio A/B
Page 201: APPENDIX I gene blattner ratio p-va
Page 205 and 206: Statement of sources Declaration I
Page 207: 190
show all

Coordinated regulation of gene expression by E ... - Jacobs University

You also want an ePaper? Increase the reach of your titles

Delete template?

Save as template?