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• Direct Connection - BioAssay clients connect directly to Oracle via Oracle client software. Best for high-speed LANs. If a valid username and password are entered for the appropriate server, BioAssay opens with the Start Page visible: Administrator • Oracle Service - The Oracle service where the bioassayhts schema is installed • Schema - The name of the BioAssay schema - by default bioassayhts • Proxy Connection - BioAssay clients use a HTTP server to communicate with Oracle. Fastest on lower-speed WANs, or on machines where Oracle client software is unavailable. • Server - the name of the server where the BioAssay server is installed Options available from the BioAssay application could differ from user to user depending on permissions. If you do not see something you feel you should have access to, please see your system administrator. Terminology • HTS -High Throughput Screening - testing thousands of compounds in a short period of time. • LTS - Low Throughput Screening - more indepth screening of fewer compounds. • Protocol - In BioAssay, a collection of database fields and calculations that hold data about a given biological experiment. • Plate - A means of holding multiple samples in an easily transportable unit. • Plate Format - The layout of the wells on a plate. • Well Format - The type of contents in a well - compound, control, empty, etc. • Aggregate - A calculation that summarizes multiple results in one number, e.g. Average, Maximum, Minimum, Standard Deviation, Curve Fits. 100•BioAssay <strong>CambridgeSoft</strong> Terminology
• Grouping - Used in conjunction with aggregate calculations to summarize data. • Primary Tables - The collection of tables that are automatically filled and calculated. • Summary Tables - Summary tables provide alternate ways of summarizing primary data. • File Import Template - A template which indicates how to take data from a file or files and place it into a HTS protocol • Graph Template - Information that tells HTS how to place data in a 2-D graph. • Browse Table - A table allowing the user to interact with data and perform Quality Control tasks. • Search Table - A table allowing the user to search all protocol data. • % Inhibition - A basic measure of potency normalizing raw data to a positive and negative control. • IC50,EC50, LD50 - Measures of compound potency ñ the concentration in a protocol at which a compound is effective at the 50% level. • Valid, Invalid, Not Validated - measures of confidence in data. Generally, data that has less confidence assigned is less visible. • Curve Fitting - Using an algorithm to determine the line that best fits a set of points. The parameters of this equation can then be used in further calculations. • Direct Connection - BioAssay clients connect directly to Oracle via Oracle client software. Best for high-speed LANs. • Proxy Connection - BioAssay clients use a HTTP server to communicate with Oracle. Fastest on lower-speed WANs, or on machines where Oracle client software is unavailable. • Picklist - A defined list of items a user may pick from in a protocol. Navigation The user interface for BioAssay is split into two major frames: The Navigator and the Content Frame. The Navigator (found in the left frame) acts much like a tree in Microsoft Explorer. Protocols are organized into folders in the tree. Expand folders in the tree to find what you are looking for. The Content Frame displays the contents of the open folder in the Navigator. The content frame can be used in 3 different modes: Browse, Filter, and Edit, depending upon the table displayed. The Actions button in the Content Frame makes data specific tasks available to the user. Resizing and Moving Columns Columns in tables in the Content Frame are resized by the click and drag method often used in table/spreadsheet interfaces. <strong>ChemOffice</strong> Enterprise Workgroup & Databases 2005 BioAssay • 101 Navigation
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ChemOffice.Com ® ChemOffice ® Ent
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License Information ChemOffice, Che
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· Licensed users of ChemOffice Ent
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computer, except as provided below.
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CAMBRIDGESOFT ChemOffice Desktop to
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ENTERPRISE ChemOffice WebServer Ent
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KNOWLEDGE E-Notebook Enterprise Des
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KNOWLEDGE Document Manager Desktop
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KNOWLEDGE 21CFR11 Compliance Electr
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RESEARCH & Inventory Manager Chemic
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CHEMICAL The Merck Index Chemistry
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CHEMICAL Chemical Databases Referen
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CONSULTING & Consulting & Services
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CS Software Problem Report For fast
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