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Administrator In order to plot your data, you must first have a graph template designed for your protocol. Graph templates define not only what data is plotted, but where the graph template is accessed from, and the physical properties of the graph. Creating a Graph Template Graph templates are used to plot data in a protocol. These templates define properties such as: • Which data is to be plotted • Physical properties of the graph - e.g. error bars, gridlines, graph type, data point markers • Where the graph template can be accessed from To create a new graph template, right-click the Graph Templates folder in the Protocol Definition tree (for the appropriate protocol), and select New Template. A new template is listed under the folder. To begin defining a template: 1. Click the graph template name (found in the Graph Templates folder) in the Protocol Definition tree. The graph template details open in the right frame. 2. Enter the desired information: • Template Name - a name for the template • Comment - additional comments for the template. • Available From - The table in the protocol where this graph template can be accessed from. That is, the place where the user can right-click and choose to plot the data, using this template. • Get Data From - The table the plotted data is taken from. This may or may not match the Available From field. • X-Axis - The field from which the application should populate the X-Axis. • Y-Axis - The field from which the application should populate the Y-Axis. 3. Click Graph Options to define the graph options. The Graph Options dialog appears. Please see “Graphing Options” on page 132 for more information. 4. Click Save Changes. Plotting Data using a Graph Template Graphs are viewed using the Graph Viewer. See “Related Graphical Data” on page 108 for more information. NOTE: If the opened template is new, the above frame is populated with default information. Fitting Data to a Curve The graphing interface will fit any data to any curve as long as the curve is defined in the system. Two default curves are defined: • Sigmoidal-dose response • One Phase exponential decay For more information about how to define a new curve fit equation, please see “Define a New Curve Fit Calculation” on page 121. If the correct curve is already defined, do the following to fit plotted data to a curve: 130•BioAssay CambridgeSoft Protocols
1. After plotting data, click Curve. 2. Highlight the name of the curve in the Available Curves box. 3. Click Graph Selected Curve. The name of the curve appears in the Graphed Curve box. 4. Repeat this process until all of the curves you wanted plotted are listed in the Graphed Curve box. 5. Click OK. All curves listed in the Graphed Curve box are added to the plot, fitting the equation as close as possible to the data points. The graph characteristics, such as the type of scaling on the axes and how far the fitted curve is extended from the data, are defined in the Graph Options dialog box. After fitting the data to a curve, the Data Tab will display equation parameter values, and fit statistics. Curve Fit Templates Curve Fit Templates are listed in the Available Curves box found in the Add or Remove Curve window. To access this window, click Curve from any plot. For more information about using a template that is already listed, please see “Fitting Data to a Curve” on page 130. Creating a New Template To create a new curve fit template: 1. From the Add or Remove Curve window, click New. The Curvefit Template window opens. 2. Enter a name for the template in the Name textbox. 3. Highlight the Model to be used. For more information about creating new models, please see “Defining a New Model” on page 122. 4. Enter Parameter information under the Parameters Tab. 5. Select Variable or Constant, in the Type column, for each parameter. 6. Enter a numerical value, or select a value from the drop-down menu in the Value column. 7. Enter additional information under the Advanced Tab. 8. Click OK. The name or your new template will be listed in the Available Curves box. Editing a Template The edit template interface behaves just like the new template interface. If you would like to edit a template: • From the Add or Remove Curve window, click Edit. The Curvefit Template window opens with the current template settings populating the fields in the window. See “Creating a New Template” on page 131 for more details. Viewing the Plotted Data The Data Tab found on any plot frame displays the data plotted along with information about any curve fits made. ChemOffice Enterprise Workgroup & Databases 2005 BioAssay • 131 Protocols
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