ChemOffice.Com - CambridgeSoft

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Administrator the actual version of the CambridgeSoft Oracle Cartridge software. • select * from cscartridge.globals; returns the whole table of cartridge infromation • select value from cscartridge.globals where id = 'VERSION' reyurns only the version of the cartridge Checking for fields indexed by the cartridge The cartridge maintains the all_csc_indexes table in its own schema or in the tablespacedesignated in PARAMETERS when creating the index. The columns of this table are: • OWNER • INDEX_NAME • TABLE_NAME • COLUMN_NAME • COLUMN_TYPE All of the fields are defined as VARCHAR2(30) columns. Every index created by the cartridge has an entry in this table. The content of this table can be retrieved by the public. By retrieving the content the client program can know if a column is supposed to contain chemical structures. For Example: select * from cscartridge.all_csc_indexes where owner = 'me' and table_name = 'my_table' and column_name = 'my_column' What to do if creating an index fails When the user executes a CREATE INDEX command, the cartridge reads all the rows from the table, and creates its own tables for fast substructure search. There are three different outcomes of the execution of the CREATE INDEX command 1. Success indicated by an "index created" message usually displayed by the client program 2. Invalid data in one or more records indicated by an "ORA-29863: warning in the execution of ODCIINDEXCREATE routine" message. In this case the user should check the content of the CsCartridge.Index_name_E table for the unhandled records, which are logged by the cartridge. The index is usable as it is, the noninterpreted records should be manually reviewed and corrected. The CsCartridge.Index_name_E table contains the rowid-s of the failed rows, and an error message, The user has to locate the failed rows by the rowid, and correct the errors. 3. If an exception is thrown by ORACLE, which is not handled by the cartridge, then the index creation results in an ORA-xxxxx message, and a call stack. If this happens, then the index is marked by Oracle as LOADING/FAILED/UNUSABLE, and the only command a user can execute regarding the index is the ALTER INDEX REBUILD command. The following: ALTER INDEX ixname REBUILD PARAMETERS('CONTINUE_POPULATIN G'); 198•CS Oracle Cartridge CambridgeSoft What to do if creating an index fails
will attempt to continue processing the input data. If this process fails repeatedly, it is recommended to call support at CambridgeSoft. It may also be worth trying the following alternative: NOTE: The following must be accomplished for Oracle versions 9.2.0.2, 9.2.0.3, or 9.2.0.4 due to an Oracle bug. See the Oracle Cartridge readme for another known issues. DROP INDEX ixname FORCE; -- to remove the index even if it is in LOADING/FAILED/UNUSABLE state CREATE INDEX ixname ON tab(fld) INDEXTYPE IS CsCartridge.MoleculeIndexType PARAMETERS('SKIP_POPULATING'); UPDATE tab SET fld=fld; COMMIT; If the UPDATE fails, then the CsCartridge.schema_name_ixname_O.current_ro wid points to the record which failed. The failed record should be deleted or corrected. After accomplishing this, the UPDATE and COMMIT commands must be executed again. Setup problems ORA-28575 unable to open RPC connection to external procedure agent When using the cartridge for the first time some users may experience the above error message. This message is the consequence of some mistake in the ORACLE server's setup. It is issued by the Oracle server, when it tries to load the extproc program, an agent which in turn loads the CsCartridge.dll (Windows) or the CsCartridge.so (Unix) program into memory. Oracle uses the extproc program (called external procedure agent) to load external binaries into memory because, the binary executables written by independent developers are not trustworthy enough to be loaded into Oracle's main address space. The executables can crash, thus shutting down the whole service. Loading into the address space of the extproc agent, is optimal because even if it crashes, it just crashes the client program which triggered its use, leaving the server intact. To find the extproc program in the Oracle installation, Oracle uses two configuration files: • listener.ora • tnsnames.ora If those files are missing, or are not set up correctly, or if the extproc program is missing, then Oracle can not load the extproc program, and issues the ORA-28575 error message. The listener.ora and the tnsnames.ora files are located in the $ORACLE_HOME/network/admin directory. The listener.ora file is used, whenever the listener service is restarted. On Windows computers it is started usually when the computer starts up, and can be stopped/started using the "services" list from the Control Panel. On Unix computers they are controlled by the $ORACLE_HOME/bin/lsnrctl command. listener.ora The listener.ora file must have the following lines LISTENER = (DESCRIPTION_LIST = (DESCRIPTION = (ADDRESS_LIST = (ADDRESS = (PROTOCOL = IPC)(KEY = EXTPROC)) ) ChemOffice Enterprise Workgroup & Databases 2005 CS Oracle Cartridge • 199 Setup problems
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ChemOffice.Com ® ChemOffice ® Ent
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License Information ChemOffice, Che
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· Licensed users of ChemOffice Ent
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computer, except as provided below.
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Q: IS IT OK TO COPY MY COLLEAGUE’
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A Guide to CambridgeSoft Manuals An
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Administrator Viewing Marked Record
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Administrator Formgroup . . . . . .
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Administrator Logging Off . . . . .
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Administrator viii•Contents Cambr
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Administrator x•ChemOffice Enterp
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Administrator 2• CambridgeSoft
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Administrator Submitting Documents
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Performing a Search The Search Resu
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The Registration System log in page
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Administrator The Batch Registratio
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Administrator change the format of
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Administrator To add analytics data
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Administrator 2. Take the appropria
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Administrator 2. Take the appropria
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If you want to Then To add a new so
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Administrator Defining Result Type
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Administrator When an .sdf file is
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If you want to Then Administrator I
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Administrator Viewing System Duplic
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Administrator 32•Registration Sys
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Adding a Product/Substance Adding a
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Administrator To view details of a
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Administrator To edit a lab in the
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To edit a status in the Status tabl
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To edit a experiment type in the Ex
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Administrator 44•Formulations & M
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Administrator Location An Inventory
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Administrator • Comments The rema
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Administrator There are two options
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Administrator simplest way to refle
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Administrator The New Substance for
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Administrator Enterprise The option
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Administrator 3. Click the Manage S
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Administrator open abbreviated edit
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Administrator The following window
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Administrator 4. When you have ente
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Administrator Creating Daughter Pla
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Administrator 4. Make the appropria
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Administrator container (left frame
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Administrator A list of containers
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Administrator Amount, Supplier Name
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Administrator • Click the linked
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Administrator Reports Inventory Ult
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Administrator 3. Select the table t
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Administrator Enterprise Analyze Au
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Administrator 84•Inventory Cambri
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Administrator Browsing Search resul
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Administrator Your report appears.
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Administrator The New Action form a
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Administrator Actions and Test are
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Administrator The input values for
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Administrator To retire a User 1. C
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• Direct Connection - BioAssay cl
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Administrator To resize the columns
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Administrator Fields contained in t
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Administrator 3. Click Add. 6. Drag
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may contain 2 tables, a plates and
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Administrator table in the above im
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4. Select the template you would li
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If you would like to... Then... c.
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Administrator • Fields which will
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Administrator 7. Select the number
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7. Continue with step 4 in Use a De
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Administrator 3. Enter a name for t
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a. Click Add to add parameters for
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7. Select the type of file you are
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Data Source File Type Description T
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Administrator In order to plot your
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Administrator Equation The Equation
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Administrator Click OK. Graph Optio
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Administrator To define the general
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Administrator BioAssay uses the Che
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Administrator 140•BioAssay Cambri
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Administrator Login to BioSAR Enter
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Administrator Edit Schema Descripti
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Administrator have one primary key,
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Function Name Description Administr
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Administrator For example, the foll
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For example, the following searches
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Administrator The NEAR operator can
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For example, the following searches
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AutoFit On The Change Validity wind
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Administrator 260•BioAssay Action
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Administrator 262•BioAssay Plate
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Administrator 264•Oracle Cartridg
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Cayman Chemical Company Celanese, L
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Marker Gene Technologies, Inc. Mars
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Varsal Instruments, Inc. VIS Farmac
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Administrator 272•ChemSCX Partici
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Administrator 274•ChemSCX Partici
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There are several ways to make anot
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Administrator By default, the field
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Administrator Searching by name For
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4. point 5. click 11.Double-click t
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Administrator Performing a Combined
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Administrator Clearing marked recor
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Administrator Requirements, install
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Administrator vi•Index CambridgeS
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CAMBRIDGESOFT ChemOffice Desktop to
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CS ChemOffice Software Suites ChemO
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DESKTOP CS E-Notebook Electronic Jo
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DESKTOP CS ChemDraw Chemical Struct
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DESKTOP CS Chem3D Molecular Modelin
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DESKTOP CS ChemFinder Searching and
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DESKTOP CS ChemInfo Reference and C
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ENTERPRISE ChemOffice WebServer Ent
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ENTERPRISE Oracle Cartridge Enterpr
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KNOWLEDGE E-Notebook Enterprise Des
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KNOWLEDGE Document Manager Desktop
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KNOWLEDGE 21CFR11 Compliance Electr
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RESEARCH & Registration System Chem
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RESEARCH & Inventory Manager Chemic
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RESEARCH & CombiChem Enterprise Des
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RESEARCH & BioAssay HTS Biological
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RESEARCH & BioSAR Browser Biologica
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CHEMICAL ChemACX Database Available
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CHEMICAL The Merck Index Chemistry
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CHEMICAL Chemical Databases Referen
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CONSULTING & Consulting & Services
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CS Software Problem Report For fast
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ChemOffice.Com - CambridgeSoft

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