plant surface microbiology.pdf

More documents

Recommendations

Info

538 Frank B. Dazzo Table 2. In situ plot-based spatial distribution analysis of corn phyllosphere prokaryotic microbial communities Parameter Control BT corn Interpretation corn (Pioneer (Pioneer 3573) 36N05) Spatial density (cells/mm 2 ) 214,615 172,692 Higher on control corn Morista dispersion value 1.3086 1.7805 Clumped distribution Variance/mean ratio 7.7346 13.6624 Clumped distribution Negative binomial K distribution 1.9238 0.6779 Clumped distribution Lloyd’s patchiness value 1.3144 1.7931 Clumped distribution Nonfilamentous microbial cover (%) 2.2 0.4 Higher on control corn The spatial distribution of prokaryotic microorganisms on the phylloplane surface of these two corn varieties was compared by analyzing several CMEIAS in situ plot-based measurement features on a sample set of 104 quadrat images (52 quadrats each). The mean values of their spatial density (cells/unit of surface area) and percent nonfilamentous microbial cover indicated a significantly higher level of bacterial colonization on the phylloplane of the Pioneer 36N05 (control corn) variety (Table 2). An ascending sort plot of the entire range of spatial density for each image quadrat provided further insight into the basis for this difference in spatial distribution,with clear indication that the overall density of bacteria on the BT-corn phylloplane was lower because that habitat contained more image quadrats with no bacterial cover (Fig. 14). Table 2 lists several other computations that define the patterns of spatial distribution for microbes that colonize these plant leaf surfaces, all derived from in situ plot-based data extracted from image quadrats by CMEIAS and computed in EcoStat. The Morista Index measures the degree of dispersion, with values 1 for a clumped pattern. The variance/mean ratio from the observed pattern of frequencies (proportion of quadrats that contain organisms) to those predicted by a Poisson distribution is approximately 1 for randomly spaced populations, significantly >1 for clumped spacing, and
Page 2:
PLANT SURFACE MICROBIOLOGY
Page 6:
Professor Dr. Ajit Varma Director A
Page 10:
VI ology. The basic concepts in pla
Page 14:
VIII Contents 6.1 Abiotic Factors .
Page 18:
X Section B Contents 7 The Function
Page 22:
XII 3 Impact of Genetically Modifie
Page 26:
XIV 4.9 Arabidopsis thaliana . . .
Page 30:
XVI Contents 4.1 Diversity of Arbus
Page 34:
XVIII 6.2 Role and Properties of Gl
Page 38:
XX Contents 4.1 Isolated Cuticles a
Page 42:
XXII Contents 6.5 CMEIAS v. 3.0: In
Page 46:
Contributors Abbott, Lynette K. Sch
Page 50:
Ghimire, Sita R. Centre for Researc
Page 54:
Meyer, William Department of Plant
Page 58:
Tripathi,K.K. Department of Biotech
Page 62:
2 Ajit Varma et al. technical diffi
Page 66:
4 Ajit Varma et al. prowazekii with
Page 70:
6 Ajit Varma et al. parasite on oth
Page 74:
8 Ajit Varma et al. interaction wit
Page 78:
10 Ajit Varma et al. mative, quanti
Page 82:
2 Root Colonisation Following Seed
Page 86:
Fig. 1. Colonisation tube system (f
Page 90:
3.4 Seed Inoculation Seeds are plac
Page 94:
Page 98:
selection using GFP-expressing bact
Page 102:
plant roots from the sand, these ca
Page 106:
tant for colonisation, but neither
Page 110:
6.2 Biotic Factors 2 Root Colonisat
Page 114:
Page 118:
Page 122:
Page 126:
36 CH 4 Ralf Conrad O 2 CH 4 methan
Page 130:
38 Ralf Conrad Finally, aquatic pla
Page 134:
40 Ralf Conrad Fig. 3. Emission of
Page 138:
42 Ralf Conrad The general coloniza
Page 142:
44 Ralf Conrad acceptor. However, l
Page 146:
46 Ralf Conrad Brioukhanov A, Netru
Page 150:
48 Ralf Conrad King GM, Garey MA (1
Page 154:
50 Ralf Conrad Yao H, Conrad R (200
Page 158:
52 Galdino Andrade or the transform
Page 162:
54 Galdino Andrade and 2-15 % prote
Page 166:
56 Galdino Andrade organic nitrogen
Page 170:
58 SO4 Galdino Andrade Assimilatory
Page 174:
60 Galdino Andrade phosphate compou
Page 178:
62 Galdino Andrade In our laborator
Page 182:
64 Galdino Andrade Fig. 9. Bacteria
Page 186:
66 Galdino Andrade Plants Carbon De
Page 190:
68 Galdino Andrade organic phosphat
Page 194:
5 Diversity and Functions of Soil M
Page 198:
Page 202:
Page 206:
Page 210:
Page 214:
Page 218:
Page 222:
Page 226:
Page 230:
Page 234:
Page 238:
Page 242:
Page 246:
Page 250:
6 Signalling in the Rhizobia-Legume
Page 254:
acid, ethylene and jasmonates are i
Page 258:
Page 262:
Page 266:
increases the activity of the bdhA
Page 270:
which are perhaps intermediates in
Page 274:
Page 278:
Page 282:
Page 286:
Page 290:
Page 294:
122 Galdino Andrade Some studies ha
Page 298:
124 Galdino Andrade Nutrient limita
Page 302:
126 Galdino Andrade significant qua
Page 306:
128 Galdino Andrade decrease in the
Page 310:
130 Galdino Andrade References and
Page 314:
132 Galdino Andrade Smith RA, Couch
Page 318:
134 Bernard R. Glick and Donna M. P
Page 322:
Page 326:
Page 330:
Page 334:
Page 338:
Page 342:
146 Lukas Schreiber, Ursula Krimm a
Page 346:
Page 350:
Page 354:
Page 358:
Page 362:
Page 366:
158 James F. White Jr. et al. endop
Page 370:
160 James F. White Jr. et al. 4.3 P
Page 374:
162 James F. White Jr. et al. Fig.
Page 378:
164 James F. White Jr. et al. leaf
Page 382:
166 James F. White Jr. et al. cutic
Page 386:
168 James F. White Jr. et al. 6.3 M
Page 390:
170 James F. White Jr. et al. Fig.
Page 394:
172 James F. White Jr. et al. form
Page 398:
174 James F. White Jr. et al. itive
Page 402:
176 James F. White Jr. et al. Clay
Page 406:
178 James F. White Jr. et al. White
Page 410:
180 Michael Kaldorf et al. poplar,
Page 414:
182 Table 1: Studies assessing the
Page 418:
184 Michael Kaldorf et al. 1995). S
Page 422:
186 Michael Kaldorf et al. chitinas
Page 426:
188 Michael Kaldorf et al. resistan
Page 430:
190 Michael Kaldorf et al. the GPD/
Page 434:
192 Michael Kaldorf et al. Referenc
Page 438:
194 Michael Kaldorf et al. Hoffmann
Page 442:
196 Michael Kaldorf et al. van Rhij
Page 446:
198 Rüdiger Hampp and Andreas Maie
Page 450:
Page 454:
Page 458:
Page 462:
Page 466:
Page 470:
Page 474:
212 Ingrid Kottke Fig. 1. Ectomycor
Page 478:
214 Ingrid Kottke nificant structur
Page 482:
216 d Ingrid Kottke rcc ph rccw ccw
Page 486:
218 Ingrid Kottke Fig. 6. Scheme il
Page 490:
220 Ingrid Kottke Picea mariana Mil
Page 494:
222 Ingrid Kottke suberin digestion
Page 498:
224 Ingrid Kottke When dissolving t
Page 502:
226 Ingrid Kottke Oh KI, Melville L
Page 506:
228 respect to soral morphology,tel
Page 510:
230 Robert Bauer and Franz Oberwink
Page 514:
Page 518:
Page 522:
Page 526:
238 Giang Huong Pham et al. The fun
Page 530:
240 Giang Huong Pham et al. reactio
Page 534:
242 Giang Huong Pham et al. Fig. 5.
Page 538:
244 Giang Huong Pham et al. Fig. 6.
Page 542:
246 Treated roots were colonized by
Page 546:
248 Giang Huong Pham et al. Fig. 9a
Page 550:
250 Giang Huong Pham et al. Fig. 11
Page 554:
252 Giang Huong Pham et al. 4.6 Tim
Page 558:
Page 562:
Page 566:
Page 570:
260 Giang Huong Pham et al. longed
Page 574:
Page 578:
264 Giang Huong Pham et al. Referen
Page 582:
16 Cellular Basidiomycete-Fungus In
Page 586:
Fig. 1. Hypha of Colacogloea peniop
Page 590:
Page 594:
Page 598:
4.2 Fusion-Interaction 16 Cellular
Page 602:
Fig. 12. Transverse section through
Page 606:
Page 610:
282 Sita R. Ghimire and Kevin D. Hy
Page 614:
Page 618:
Page 622:
Page 626:
Page 630:
Page 634:
294 Marjatta Raudaskoski, Mika Tark
Page 638:
Page 642:
Page 646:
Page 650:
Page 654:
Page 658:
Page 662:
Page 666:
Page 670:
Page 674:
Page 678:
Page 682:
Page 686:
Page 690:
Page 694:
Page 698:
Page 702:
Page 706:
19 Functional Diversity of Arbuscul
Page 710:
Page 714:
Page 718:
Page 722:
Page 726:
Page 730:
Page 734:
Page 738:
Page 742:
Page 746:
352 José-Miguel Barea et al. 1994)
Page 750:
354 José-Miguel Barea et al. 1992;
Page 754:
356 José-Miguel Barea et al. 5 Rea
Page 758:
358 José-Miguel Barea et al. 1992;
Page 762:
360 José-Miguel Barea et al. AM-de
Page 766:
362 José-Miguel Barea et al. pound
Page 770:
364 José-Miguel Barea et al. Berta
Page 774:
366 José-Miguel Barea et al. Giani
Page 778:
368 José-Miguel Barea et al. Lynch
Page 782:
370 José-Miguel Barea et al. Toro
Page 786:
21 Carbohydrates and Nitrogen: Nutr
Page 790:
Page 794:
Page 798:
Page 802:
Page 806:
Page 810:
Page 814:
Page 818:
Page 822:
Page 826:
394 A. Javelle et al. 1.2 Nitrogen
Page 830:
396 A. Javelle et al. genes were re
Page 834:
398 A. Javelle et al. gest that myc
Page 838:
400 A. Javelle et al. 3.3 Isolation
Page 842:
402 A. Javelle et al. lular Gln amo
Page 846:
404 A. Javelle et al. In Paxillus i
Page 850:
406 A. Javelle et al. capabilities
Page 854:
408 A. Javelle et al. as two other
Page 858:
410 A. Javelle et al. Glu. Glutamin
Page 862:
412 A. Javelle et al. Table 1. Rela
Page 866:
414 A. Javelle et al. catalysed by
Page 870:
416 A. Javelle et al. GLU2 is expre
Page 874:
418 A. Javelle et al. gen to plants
Page 878:
420 A. Javelle et al. (Hoshida et a
Page 882:
422 A. Javelle et al. Bajwa R, Abua
Page 886:
424 A. Javelle et al. Garnier A, Be
Page 890:
426 A. Javelle et al. Limami A, Phi
Page 894:
428 A. Javelle et al. Ritchie RJ, G
Page 898:
23 Visualisation of Rhizosphere Int
Page 902:
Page 906:
Page 910:
5 Microscope Analysis of Infection
Page 914:
Page 918:
Page 922:
cells by hyphae. No penetration str
Page 926:
Page 930:
Page 934:
24 Microbial Community Analysis in
Page 938:
titative data about the community c
Page 942:
Page 946:
Page 950:
Page 954:
Page 958:
Page 962:
3.5 Community Analysis by Fatty Aci
Page 966:
Page 970:
Page 974:
Page 978:
472 Contactangle Daniel Knoll and L
Page 982:
474 Daniel Knoll and Lukas Schreibe
Page 986:
Page 990:
478 A cuticle B Daniel Knoll and Lu
Page 994:
Page 998:
Page 1002:
Page 1006:
Page 1010:
26 Quantifying the Impact of ACC De
Page 1014:
Page 1018:
Page 1022:
Page 1026:
Page 1030:
Page 1034:
Page 1038:
27 Applications of Quantitative Mic
Page 1042:
Page 1046:
Page 1050:
Page 1054:
Page 1058: 27 Applications of Quantitative Mic
Page 1112: 540 Frank B. Dazzo involvement of t
Page 1116: 542 Frank B. Dazzo Fig. 16. Geostat
Page 1120: 544 Frank B. Dazzo the power of geo
Page 1124: 546 Frank B. Dazzo Dazzo FB, Hollin
Page 1128: 548 Frank B. Dazzo erney MJ, Stetze
Page 1132: 550 Frank B. Dazzo van Workum WAT,
Page 1136: 552 Emanuele G. Biondi 2 Materials
Page 1140: 554 Emanuele G. Biondi eral species
Page 1144: 556 - Low intensity of the bands: i
Page 1148: 558 Emanuele G. Biondi CCA ATT CT-3
Page 1152: 560 Emanuele G. Biondi Experimental
Page 1156: 562 Emanuele G. Biondi two strains
Page 1160:
564 Emanuele G. Biondi References a
Page 1164:
29 Functional Genomic Approaches fo
Page 1168:
Page 1172:
Page 1176:
Page 1180:
Page 1184:
Page 1188:
Page 1192:
Page 1196:
Page 1200:
Page 1204:
Page 1208:
Page 1212:
Page 1216:
30 Axenic Culture of Symbiotic Fung
Page 1220:
Page 1224:
Page 1228:
Page 1232:
Page 1236:
Page 1240:
9 Phosphatic Nutrients 30 Axenic Cu
Page 1244:
Modified aspergillus medium (Varma
Page 1248:
Page 1252:
Page 1256:
Page 1260:
616 Subject Index Antifungal activi
Page 1264:
618 Subject Index Cryosection 317 C
Page 1268:
620 Subject Index Fusarium sp. 73,
Page 1272:
622 Subject Index Leaf surface colo
Page 1276:
624 Subject Index Penicillium sp. 7
Page 1280:
626 Subject Index Salmon sperm DNA
Page 1284:
628 Subject Index Y Yellow fluoresc
show all

plant surface microbiology.pdf

You also want an ePaper? Increase the reach of your titles

Delete template?

Save as template?