plant surface microbiology.pdf

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Botanophila 171 Bradyrhizobium 73, 82, 238 B. japonicum 2, 3 Brassica juncea 255 B. oleracea 255 Brassicaceae 76 Brevibacterium 89 Brightfield microscopy 510, 519, 524 Bryophyte 242 BSA 569 Bt toxin 181, 184 BT transgenic <strong>plant</strong>s 4 Bt-maize 122 B-transducin 590 Bt-transgenic <strong>plant</strong>s 121 Bulk soil 197, 450, 459, 464 Burkholderia 82, 198, 200, 201 B. cepacia 201 Burkholderia-like bacteria 358 C Caenorhabd iris elegans 580 Calcium oscillations 112 cAMP 376 Candida sp. 89 C. albicans 597 Capsule 506, 508, 512, 513 Carboxytates (complexone) 90 Cassette vector 440 Cassia angustifolia Vahl 243 Casuarina sp. 81 Casuarinaceae 81 Catabolic diversity 73 Catabolic response profile (CRP) 73 Catecholate siderophores 90 Cauliflower mosaic virus 124 Caullinite 125 Cdc2a kinase 316 Cdc42 306 Ceanothus 81 Cell attachment 505, 508 Cell cycle switch protein 580 Cell division 314 Cell motility 505, 527-528 Cell wall 303 Cellobiohydrolase 87, 88 Cellular interaction 267 Cellulase 54, 80,522 Cellulolytic fungi 86 Cellulomonas sp. 82 Cenococcum sp. 393, 410, 416 Cephalozia biscuspidata 242 Subject Index 617 Cercospora 89 Chalamydospores 237, 594 Charge couple device (CCD) 439 Chemo-heterotrophic 122 Chenopodiaceae 76 Chitinase 82 Chlamydia tracchomatis 3, 4 Chlamydomonas reinhardtii 239 Chlorobium sp. 73 Chlorophytum borivillianum 243, 247 C. tuberosum Baker 243 Cholesterol 124 Chromaspin-400 Columns 573 Chum synthase I 590 Cicer arietinum 245 C. borivillianum 247 C. purpurea 174 C. sinensis 158 Citrobacter sp. 89 Cladosporium sp. 89, 597 Clathrin adapter protein 590 Clavicipitaceae 4, 158 Clavicipitaleans sp. 157 Clostridium sp. 73 CMC-ase 261 CMEIAS 9, 531, 544 Co-cultivation 252 Co-culture 252 Coffea arabica 243 Coils 567 Colacogloea peniophorae 269 Colacosomes 6, 268 Collectotrichum 287 Colonization 149, 242 Community level physiological profile (CLPP) 463 Competitive colonisation 17 Computer-assisted microscopy 526, 528, 530, 544 Confocal laser scanning microscopy (CSLM) 8, 355, 451, 509, 540, 543 Contact angle 471, 472 Coprogen 90 Coralloid 595 Cordyceps militaris 158 Cordycipitoideae 158, 159 Cortical microtubules 298 Cortinarius varius 260 Crack entry 510, 531 cry genes 124 Cry protein 123, 124 Cry1Ab toxin 125
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PLANT SURFACE MICROBIOLOGY
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Professor Dr. Ajit Varma Director A
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VI ology. The basic concepts in pla
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VIII Contents 6.1 Abiotic Factors .
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X Section B Contents 7 The Function
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XII 3 Impact of Genetically Modifie
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XIV 4.9 Arabidopsis thaliana . . .
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XVI Contents 4.1 Diversity of Arbus
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XVIII 6.2 Role and Properties of Gl
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XX Contents 4.1 Isolated Cuticles a
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XXII Contents 6.5 CMEIAS v. 3.0: In
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Contributors Abbott, Lynette K. Sch
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Ghimire, Sita R. Centre for Researc
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Meyer, William Department of Plant
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Tripathi,K.K. Department of Biotech
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2 Ajit Varma et al. technical diffi
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4 Ajit Varma et al. prowazekii with
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6 Ajit Varma et al. parasite on oth
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8 Ajit Varma et al. interaction wit
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10 Ajit Varma et al. mative, quanti
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2 Root Colonisation Following Seed
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Fig. 1. Colonisation tube system (f
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3.4 Seed Inoculation Seeds are plac
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selection using GFP-expressing bact
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plant roots from the sand, these ca
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tant for colonisation, but neither
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6.2 Biotic Factors 2 Root Colonisat
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36 CH 4 Ralf Conrad O 2 CH 4 methan
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38 Ralf Conrad Finally, aquatic pla
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40 Ralf Conrad Fig. 3. Emission of
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42 Ralf Conrad The general coloniza
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44 Ralf Conrad acceptor. However, l
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46 Ralf Conrad Brioukhanov A, Netru
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48 Ralf Conrad King GM, Garey MA (1
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50 Ralf Conrad Yao H, Conrad R (200
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52 Galdino Andrade or the transform
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54 Galdino Andrade and 2-15 % prote
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56 Galdino Andrade organic nitrogen
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58 SO4 Galdino Andrade Assimilatory
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60 Galdino Andrade phosphate compou
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62 Galdino Andrade In our laborator
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64 Galdino Andrade Fig. 9. Bacteria
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66 Galdino Andrade Plants Carbon De
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68 Galdino Andrade organic phosphat
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5 Diversity and Functions of Soil M
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6 Signalling in the Rhizobia-Legume
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acid, ethylene and jasmonates are i
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increases the activity of the bdhA
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which are perhaps intermediates in
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122 Galdino Andrade Some studies ha
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124 Galdino Andrade Nutrient limita
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126 Galdino Andrade significant qua
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128 Galdino Andrade decrease in the
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130 Galdino Andrade References and
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132 Galdino Andrade Smith RA, Couch
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134 Bernard R. Glick and Donna M. P
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146 Lukas Schreiber, Ursula Krimm a
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158 James F. White Jr. et al. endop
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160 James F. White Jr. et al. 4.3 P
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162 James F. White Jr. et al. Fig.
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164 James F. White Jr. et al. leaf
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166 James F. White Jr. et al. cutic
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168 James F. White Jr. et al. 6.3 M
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170 James F. White Jr. et al. Fig.
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172 James F. White Jr. et al. form
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174 James F. White Jr. et al. itive
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176 James F. White Jr. et al. Clay
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178 James F. White Jr. et al. White
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180 Michael Kaldorf et al. poplar,
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182 Table 1: Studies assessing the
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184 Michael Kaldorf et al. 1995). S
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186 Michael Kaldorf et al. chitinas
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188 Michael Kaldorf et al. resistan
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190 Michael Kaldorf et al. the GPD/
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192 Michael Kaldorf et al. Referenc
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194 Michael Kaldorf et al. Hoffmann
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196 Michael Kaldorf et al. van Rhij
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198 Rüdiger Hampp and Andreas Maie
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212 Ingrid Kottke Fig. 1. Ectomycor
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214 Ingrid Kottke nificant structur
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216 d Ingrid Kottke rcc ph rccw ccw
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218 Ingrid Kottke Fig. 6. Scheme il
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220 Ingrid Kottke Picea mariana Mil
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222 Ingrid Kottke suberin digestion
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224 Ingrid Kottke When dissolving t
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226 Ingrid Kottke Oh KI, Melville L
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228 respect to soral morphology,tel
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230 Robert Bauer and Franz Oberwink
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238 Giang Huong Pham et al. The fun
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240 Giang Huong Pham et al. reactio
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242 Giang Huong Pham et al. Fig. 5.
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244 Giang Huong Pham et al. Fig. 6.
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246 Treated roots were colonized by
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248 Giang Huong Pham et al. Fig. 9a
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250 Giang Huong Pham et al. Fig. 11
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252 Giang Huong Pham et al. 4.6 Tim
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260 Giang Huong Pham et al. longed
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264 Giang Huong Pham et al. Referen
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16 Cellular Basidiomycete-Fungus In
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Fig. 1. Hypha of Colacogloea peniop
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4.2 Fusion-Interaction 16 Cellular
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Fig. 12. Transverse section through
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282 Sita R. Ghimire and Kevin D. Hy
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294 Marjatta Raudaskoski, Mika Tark
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19 Functional Diversity of Arbuscul
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352 José-Miguel Barea et al. 1994)
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354 José-Miguel Barea et al. 1992;
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356 José-Miguel Barea et al. 5 Rea
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358 José-Miguel Barea et al. 1992;
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360 José-Miguel Barea et al. AM-de
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362 José-Miguel Barea et al. pound
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364 José-Miguel Barea et al. Berta
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366 José-Miguel Barea et al. Giani
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368 José-Miguel Barea et al. Lynch
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370 José-Miguel Barea et al. Toro
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21 Carbohydrates and Nitrogen: Nutr
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394 A. Javelle et al. 1.2 Nitrogen
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396 A. Javelle et al. genes were re
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398 A. Javelle et al. gest that myc
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400 A. Javelle et al. 3.3 Isolation
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402 A. Javelle et al. lular Gln amo
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404 A. Javelle et al. In Paxillus i
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406 A. Javelle et al. capabilities
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408 A. Javelle et al. as two other
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410 A. Javelle et al. Glu. Glutamin
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412 A. Javelle et al. Table 1. Rela
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414 A. Javelle et al. catalysed by
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416 A. Javelle et al. GLU2 is expre
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418 A. Javelle et al. gen to plants
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420 A. Javelle et al. (Hoshida et a
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422 A. Javelle et al. Bajwa R, Abua
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424 A. Javelle et al. Garnier A, Be
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426 A. Javelle et al. Limami A, Phi
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428 A. Javelle et al. Ritchie RJ, G
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23 Visualisation of Rhizosphere Int
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5 Microscope Analysis of Infection
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cells by hyphae. No penetration str
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24 Microbial Community Analysis in
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titative data about the community c
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3.5 Community Analysis by Fatty Aci
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472 Contactangle Daniel Knoll and L
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474 Daniel Knoll and Lukas Schreibe
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478 A cuticle B Daniel Knoll and Lu
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26 Quantifying the Impact of ACC De
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27 Applications of Quantitative Mic
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28 Analysis of Microbial Population
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- Primers for ITS amplification: FG
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6 ITS-RFLP analysis 28 Analysis of
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7 Statistical analysis 28 Analysis
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Software requirements - Scoring of
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568 Gopi K. Podila and Luisa Lanfra
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572 Kbp 5.1 - 2 - 1.3 - Gopi K. Pod
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574 Kbp 5.1 - 2 - 0.9 - Gopi K. Pod
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Page 1218: 594 Giang Huong Pham et al. Fig. 1.
Page 1222: 596 Giang Huong Pham et al. Table 1
Page 1226: 598 Giang Huong Pham et al. nucleic
Page 1230: 600 Giang Huong Pham et al. days wi
Page 1234: 602 Giang Huong Pham et al. Table 3
Page 1238: 604 Giang Huong Pham et al. The mor
Page 1242: 606 phatase in addition to the cons
Page 1246: 608 H3BO3 1.55 MnSO . 4 H2O 0.85 Zn
Page 1250: 610 CuSO 4 . 5H2 O 0.25 CoCl 2 . H2
Page 1254: 612 Giang Huong Pham et al. wrinkle
Page 1258: Subject Index A AAD 590 Abies (fir)
Page 1264: 618 Subject Index Cryosection 317 C
Page 1268: 620 Subject Index Fusarium sp. 73,
Page 1272: 622 Subject Index Leaf surface colo
Page 1276: 624 Subject Index Penicillium sp. 7
Page 1280: 626 Subject Index Salmon sperm DNA
Page 1284: 628 Subject Index Y Yellow fluoresc
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